Rmu_sc0000459.1_g000027

Lipid phosphate phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000459.1
OG0009769
Physical Location & Seq
Reverse (-)
119024 .. 121063
2040 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1050 bp
atgccggagattcagttgggttctcacaccgtaaggtctcatggagttcaagtggcgaggtttcatatgcatgattggcttattctggtggttcttgcggccatagatcttggtctgaacttgatagagccttttcaccgctttgttggagaggatatgatgacagacctgaaatacccattgaaaggcaatacagttcccttctggggtgttccaataattgcaatactgttaccgcttgccatcattattgtctactacttcatcagaagggatgtctatgatctgcaccatgccattttaggtaatacttctgtctttattcgtgattcatatcttggacagcggatttgcatgttgttgtatcctgatatcacttccacttttcatgttcattcaggccttctgttttctgtctttataaccgctgttttaactgaagcaatcaaagatggtgttggacgacctcgtccagactttttttggcgttgtttccctgatggaaaaggggtgtttgatcctgtcacaaagaatgtcatgtgtactggagagaagagtgtcattaaggaaggacacaaaagcttcccaagcgggcatacttcatggtcctttgcaggtcttactttcattgcatggtacttgtcagggaaagtgagggtgtttgatcgcaaggggcatgttgcaaaactctgtattgtcttttctccattactacttgcagcactggtagcagtttctcgagttgatgactactggcatcactggcaagatgtttttgctggaggtcttctaggagtcattgtttcttcattttgttacttgcaattctttccaccaccatatgatactgatggctggggacctcatgcgtacttccagatgctggcagactctggaaatgctcagccaccgtccactaacgcaagtagtcttaatgtacagcaagcagaactggagagtatatatatccatcatcatcaggttgttgaagcatcacaaaccagtagtggagacacaaaccccatgctaaatggtgggagaatacactag

Protein Analysis

349

Amino Acids

39.08

Weight (kDa)

6.53

Isoelectric Point (pI)

34.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP2 PF01569 135 - 277 4.5e-28 PAP2 superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 422
AasI GACNNNNNNGTC 1 cut(s) 468
Acc36I ACCTGC 1 cut(s) 605
AccB7I CCANNNNNTGG 1 cut(s) 883
AccI GTMKAC 1 cut(s) 255
AciI CCGC 6 cut(s) 98, 139, 236, 346, 426, 591
AclWI GGATC 1 cut(s) 512
AcoI YGGCCR 1 cut(s) 99
AcuI CTGAAG 1 cut(s) 459
AfaI GTAC 4 cut(s) 544, 638, 872, 939
AfiI CCNNNNNNNGG 3 cut(s) 185, 206, 883
AgsI TTSAA 3 cut(s) 50, 184, 989
AluBI AGCT 1 cut(s) 582
AluI AGCT 1 cut(s) 582
Alw26I GTCTC 2 cut(s) 42, 1005
AlwI GGATC 1 cut(s) 512
AlwNI CAGNNNCTG 2 cut(s) 883, 893
Ama87I CYCGRG 1 cut(s) 738
AoxI GGCC 2 cut(s) 99, 400
ApeKI GCWGC 1 cut(s) 719
ArsI GACNNNNNNTTYG 2 cut(s) 333, 365
AspS9I GGNCC 2 cut(s) 606, 860
AsuHPI GGTGA 1 cut(s) 128
AvaI CYCGRG 1 cut(s) 738
AvaII GGWCC 2 cut(s) 606, 860
BbsI GAAGAC 1 cut(s) 779
BbvI GCAGC 1 cut(s) 731
BccI CCATC 5 cut(s) 251, 446, 494, 845, 978
BciVI GTATCC 1 cut(s) 375
BcoDI GTCTC 2 cut(s) 42, 1005
BfaI CTAG 2 cut(s) 791, 1048
BfuAI ACCTGC 1 cut(s) 605
BfuI GTATCC 1 cut(s) 375
BglII AGATCT 1 cut(s) 106
BisI GCNGC 2 cut(s) 99, 720
BlpI GCTNAGC 1 cut(s) 903
BlsI GCNGC 2 cut(s) 100, 721
Bme18I GGWCC 2 cut(s) 606, 860
BmeT110I CYCGRG 1 cut(s) 738
BmgT120I GGNCC 2 cut(s) 606, 860
BmiI GGNNCC 1 cut(s) 861
BmsI GCATC 3 cut(s) 766, 870, 1001
BpiI GAAGAC 1 cut(s) 779
BpmI CTGGAG 3 cut(s) 567, 801, 974
Bpu1102I GCTNAGC 1 cut(s) 903
BsaBI GATNNNNATC 1 cut(s) 333
BsaI GGTCTC 1 cut(s) 42
BsaXI ACNNNNNCTCC 5 cut(s) 29, 36, 66, 786, 816
Bsc4I CCNNNNNNNGG 3 cut(s) 185, 206, 883
Bse1I ACTGG 6 cut(s) 550, 729, 758, 767, 957, 1002
Bse3DI GCAATG 1 cut(s) 627
Bse8I GATNNNNATC 1 cut(s) 333
BseGI GGATG 1 cut(s) 280
BseJI GATNNNNATC 1 cut(s) 333
BseLI CCNNNNNNNGG 3 cut(s) 185, 206, 883
BseMI GCAATG 1 cut(s) 627
BseMII CTCAG 1 cut(s) 917
BseNI ACTGG 6 cut(s) 550, 729, 758, 767, 957, 1002
BseXI GCAGC 1 cut(s) 731
BseYI CCCAGC 1 cut(s) 855
BsgI GTGCAG 1 cut(s) 272
BshFI GGCC 2 cut(s) 101, 402
BsiHKCI CYCGRG 1 cut(s) 738
BsiSI CCGG 1 cut(s) 5
BslFI GGGAC 1 cut(s) 873
BslI CCNNNNNNNGG 3 cut(s) 185, 206, 883
BsmAI GTCTC 2 cut(s) 42, 1005
BsmFI GGGAC 1 cut(s) 873
BsnI GGCC 2 cut(s) 101, 402
Bso31I GGTCTC 1 cut(s) 42
BsoBI CYCGRG 1 cut(s) 738
Bsp1407I TGTACA 1 cut(s) 937
Bsp143I GATC 4 cut(s) 106, 283, 517, 664
Bsp1720I GCTNAGC 1 cut(s) 903
BspACI CCGC 6 cut(s) 98, 139, 236, 346, 426, 591
BspANI GGCC 2 cut(s) 101, 402
BspCNI CTCAG 1 cut(s) 916
BspLI GGNNCC 1 cut(s) 861
BspMI ACCTGC 1 cut(s) 605
BspPI GGATC 1 cut(s) 512
BspTNI GGTCTC 1 cut(s) 42
BsrDI GCAATG 1 cut(s) 627
BsrGI TGTACA 1 cut(s) 937
BsrI ACTGG 6 cut(s) 550, 729, 758, 767, 957, 1002
BssMI GATC 4 cut(s) 106, 283, 517, 664
Bst4CI ACNGT 4 cut(s) 31, 196, 231, 912
Bst6I CTCTTC 1 cut(s) 548
BstAUI TGTACA 1 cut(s) 937
BstC8I GCNNGC 4 cut(s) 240, 593, 885, 945
BstDEI CTNAG 1 cut(s) 903
BstF5I GGATG 1 cut(s) 280
BstKTI GATC 4 cut(s) 109, 286, 520, 667
BstMAI GTCTC 2 cut(s) 42, 1005
BstMBI GATC 4 cut(s) 106, 283, 517, 664
BstMWI GCNNNNNNNGC 4 cut(s) 76, 588, 728, 763
BstNSI RCATGY 2 cut(s) 358, 680
BstV1I GCAGC 1 cut(s) 731
BstV2I GAAGAC 1 cut(s) 779
BstX2I RGATCY 1 cut(s) 106
BstYI RGATCY 1 cut(s) 106
BsuI GTATCC 1 cut(s) 375
BsuRI GGCC 2 cut(s) 101, 402
BtsCI GGATG 1 cut(s) 280
BtsIMutI CAGTG 2 cut(s) 722, 760
BveI ACCTGC 1 cut(s) 605
Cac8I GCNNGC 4 cut(s) 240, 593, 885, 945
CaiI CAGNNNCTG 2 cut(s) 883, 893
Cfr13I GGNCC 2 cut(s) 606, 860
Csp6I GTAC 4 cut(s) 543, 637, 871, 938
CviJI RGCY 7 cut(s) 79, 101, 130, 402, 582, 855, 907
CviKI_1 RGCY 7 cut(s) 79, 101, 130, 402, 582, 855, 907
CviQI GTAC 4 cut(s) 543, 637, 871, 938
DdeI CTNAG 1 cut(s) 903
DpnI GATC 4 cut(s) 108, 285, 519, 666
DpnII GATC 4 cut(s) 106, 283, 517, 664
DrdI GACNNNNNNGTC 1 cut(s) 468
DseDI GACNNNNNNGTC 1 cut(s) 468
EaeI YGGCCR 1 cut(s) 99
Eam1104I CTCTTC 1 cut(s) 548
EarI CTCTTC 1 cut(s) 548
Eco147I AGGCCT 1 cut(s) 402
Eco31I GGTCTC 1 cut(s) 42
Eco32I GATATC 1 cut(s) 373
Eco47I GGWCC 2 cut(s) 606, 860
Eco57I CTGAAG 1 cut(s) 459
Eco88I CYCGRG 1 cut(s) 738
EcoO109I RGGNCCY 1 cut(s) 860
EcoRV GATATC 1 cut(s) 373
EcoT22I ATGCAT 1 cut(s) 72
FaqI GGGAC 1 cut(s) 873
FauI CCCGC 1 cut(s) 584
FauNDI CATATG 2 cut(s) 66, 841
FblI GTMKAC 1 cut(s) 255
Fnu4HI GCNGC 2 cut(s) 99, 720
FokI GGATG 1 cut(s) 287
Fsp4HI GCNGC 2 cut(s) 99, 720
FspBI CTAG 2 cut(s) 791, 1048
GluI GCNGC 2 cut(s) 99, 720
GsaI CCCAGC 1 cut(s) 859
GsuI CTGGAG 3 cut(s) 567, 801, 974
HaeIII GGCC 2 cut(s) 101, 402
HapII CCGG 1 cut(s) 5
HindIII AAGCTT 1 cut(s) 580
HinfI GANTC 4 cut(s) 10, 329, 795, 890
HpaII CCGG 1 cut(s) 5
HphI GGTGA 1 cut(s) 128
Hpy166II GTNNAC 3 cut(s) 256, 543, 915
Hpy188I TCNGA 2 cut(s) 117, 269
Hpy188III TCNNGA 6 cut(s) 326, 368, 473, 738, 877, 894
Hpy8I GTNNAC 3 cut(s) 256, 543, 915
HpyAV CCTTC 4 cut(s) 211, 264, 413, 563
HpyCH4III ACNGT 4 cut(s) 31, 196, 231, 912
HpyCH4V TGCA 9 cut(s) 70, 224, 289, 354, 614, 632, 683, 719, 823
HpyF10VI GCNNNNNNNGC 4 cut(s) 76, 588, 728, 763
HpyF3I CTNAG 1 cut(s) 903
Kzo9I GATC 4 cut(s) 106, 283, 517, 664
Lsp1109I GCAGC 1 cut(s) 731
LweI GCATC 3 cut(s) 766, 870, 1001
MaeI CTAG 2 cut(s) 791, 1048
MaeIII GTNAC 3 cut(s) 231, 523, 815
MalI GATC 4 cut(s) 108, 285, 519, 666
MboI GATC 4 cut(s) 106, 283, 517, 664
MboII GAAGA 3 cut(s) 565, 779, 798
MflI RGATCY 1 cut(s) 106
MluCI AATT 2 cut(s) 219, 824
MlyI GAGTC 2 cut(s) 804, 884
MmeI TCCRAC 2 cut(s) 127, 439
MnlI CCTC 6 cut(s) 51, 145, 477, 648, 776, 873
Mph1103I ATGCAT 1 cut(s) 72
MseI TTAA 3 cut(s) 434, 564, 933
MslI CAYNNNNRTG 1 cut(s) 69
MspA1I CMGCKG 2 cut(s) 346, 428
MspI CCGG 1 cut(s) 5
MwoI GCNNNNNNNGC 4 cut(s) 76, 588, 728, 763
NdeI CATATG 2 cut(s) 66, 841
NdeII GATC 4 cut(s) 106, 283, 517, 664
NlaIV GGNNCC 1 cut(s) 861
NmuCI GTSAC 1 cut(s) 523
NsiI ATGCAT 1 cut(s) 72
NspI RCATGY 2 cut(s) 358, 680
PaeR7I CTCGAG 1 cut(s) 738
PceI AGGCCT 1 cut(s) 402
PfeI GAWTC 2 cut(s) 10, 329
PflFI GACNNNGTC 1 cut(s) 468
PflMI CCANNNNNTGG 1 cut(s) 883
PkrI GCNGC 2 cut(s) 100, 721
PleI GAGTC 2 cut(s) 803, 884
PpsI GAGTC 2 cut(s) 803, 884
PpuMI RGGWCCY 1 cut(s) 860
PsiI TTATAA 1 cut(s) 422
Psp5II RGGWCCY 1 cut(s) 860
PspFI CCCAGC 1 cut(s) 855
PspN4I GGNNCC 1 cut(s) 861
PspPI GGNCC 2 cut(s) 606, 860
PspPPI RGGWCCY 1 cut(s) 860
PstNI CAGNNNCTG 2 cut(s) 883, 893
PsuI RGATCY 1 cut(s) 106
PsyI GACNNNGTC 1 cut(s) 468
RsaI GTAC 4 cut(s) 544, 638, 872, 939
RsaNI GTAC 4 cut(s) 543, 637, 871, 938
RseI CAYNNNNRTG 1 cut(s) 69
SaqAI TTAA 3 cut(s) 434, 564, 933
SatI GCNGC 2 cut(s) 99, 720
Sau3AI GATC 4 cut(s) 106, 283, 517, 664
Sau96I GGNCC 2 cut(s) 606, 860
SchI GAGTC 2 cut(s) 804, 884
SfaNI GCATC 3 cut(s) 766, 870, 1001
Sfr274I CTCGAG 1 cut(s) 738
SinI GGWCC 2 cut(s) 606, 860
SlaI CTCGAG 1 cut(s) 738
SmiMI CAYNNNNRTG 1 cut(s) 69
SmlI CTYRAG 1 cut(s) 738
SmoI CTYRAG 1 cut(s) 738
Sse9I AATT 2 cut(s) 219, 824
SseBI AGGCCT 1 cut(s) 402
SsiI CCGC 6 cut(s) 98, 139, 236, 346, 426, 591
SspMI CTAG 2 cut(s) 791, 1048
StuI AGGCCT 1 cut(s) 402
TaaI ACNGT 4 cut(s) 31, 196, 231, 912
TaqI TCGA 1 cut(s) 739
TasI AATT 2 cut(s) 219, 824
TatI WGTACW 2 cut(s) 542, 937
TauI GCSGC 1 cut(s) 101
TfiI GAWTC 2 cut(s) 10, 329
Tru1I TTAA 3 cut(s) 434, 564, 933
Tru9I TTAA 3 cut(s) 434, 564, 933
TscAI CASTG 2 cut(s) 729, 767
TseFI GTSAC 1 cut(s) 523
TseI GCWGC 1 cut(s) 719
Tsp45I GTSAC 1 cut(s) 523
TspDTI ATGAA 8 cut(s) 53, 253, 321, 377, 383, 591, 616, 798
TspRI CASTG 2 cut(s) 729, 767
Tth111I GACNNNGTC 1 cut(s) 468
Van91I CCANNNNNTGG 1 cut(s) 883
VpaK11BI GGWCC 2 cut(s) 606, 860
XceI RCATGY 2 cut(s) 358, 680
XcmI CCANNNNNNNNNTGG 1 cut(s) 480
XhoI CTCGAG 1 cut(s) 738
XmiI GTMKAC 1 cut(s) 255
XspI CTAG 2 cut(s) 791, 1048
Zsp2I ATGCAT 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.