Rmu_sc0000551.1_g000018

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000551.1
OG0009185
Physical Location & Seq
Reverse (-)
83436 .. 86091
2656 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1182 bp
atgttggtgcaagtgcacggcggtgctctgaataatctctcctcacaaacacattcattcatggctaagcactactttaggctattttcttctgctttgcttgttttgtccttcatggtggtgcaggctgaagtagtttggggtcaagatggtactgaaaggaggaaagaaatggtgcctgcaatgttcatattcggagactctctgattgacaatggcaacaacaacaacctcccttcatttgccaaggccaactatcccccctatggaatcgatttcaatggcggaccaactggtcgttttagcaatggttacaccatggttgatgaaatagctgaattgctaggacttcctttaattcctgcgtactctgaagcttctggagatcaagtgcttcatggtgtcaattatgcatctgcagccgctggaatccttgatatcactggcagaaactttgtgggtcgcataccctttggtcaacaaataagcaacttccagactacagttgatcagataacggagactctgggtgcagatgatgttgcccgggccattgcaaagtgcatattctttgttggaatgggcagcaatgactacctaaacaattaccttatgcccaactataacaccaagaatcaatacaatgctcaacaatttgctgatctcttggctcaacaatacactcagcaactcactaggctctacaatcttggtgctcgaagatttgttattgctggagttgggaggatgggttgcataccaagtatcttagcccaaagtccaaatggaagctgctcagaggacgtcaatcgccttgttctacccttcaacgcaaatgtgaagacaatgatcaacaatcttaataccaacttacctggttcgaggttcatttacattgacattgctcgaatgtttgaagacgtcgtcaccaatgctagagcttatggattcagtgttgcgaatcgtggatgctgtggtattgggcgtaacagagggcaaattacatgtcttccaatgcaaacaccgtgcccaaatcgtgaccagtacgtgttctgggatgcatatcacccaactgcagctgtgaacatcttaattggcaggaaagctttcagtggagaccctagccaggtttaccccatgaacatacagcagcttgccactcttaacattgaaaccaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

393

Amino Acids

43.23

Weight (kDa)

6.51

Isoelectric Point (pI)

30.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 63 - 366 4.2e-35 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 294
AatII GACGTC 2 cut(s) 807, 924
AccB1I GGYRCC 1 cut(s) 175
AciI CCGC 3 cut(s) 21, 285, 423
AcuI CTGAAG 2 cut(s) 150, 393
AcyI GRCGYC 2 cut(s) 804, 921
AfaI GTAC 3 cut(s) 154, 368, 1046
AfiI CCNNNNNNNGG 2 cut(s) 266, 1126
AflIII ACRYGT 2 cut(s) 1004, 1047
AgsI TTSAA 4 cut(s) 280, 829, 917, 1172
AjnI CCWGG 2 cut(s) 874, 1125
AleI CACNNNNGTG 1 cut(s) 21
AluBI AGCT 7 cut(s) 335, 377, 792, 941, 1079, 1106, 1153
AluI AGCT 7 cut(s) 335, 377, 792, 941, 1079, 1106, 1153
Alw21I GWGCWC 3 cut(s) 18, 28, 718
Alw26I GTCTC 3 cut(s) 192, 515, 1110
Alw44I GTGCAC 1 cut(s) 14
AlwNI CAGNNNCTG 1 cut(s) 425
Ama87I CYCGRG 1 cut(s) 546
AoxI GGCC 2 cut(s) 249, 549
ApaLI GTGCAC 1 cut(s) 14
ApeKI GCWGC 5 cut(s) 419, 585, 792, 1076, 1150
ArsI GACNNNNNNTTYG 2 cut(s) 991, 1023
Asp700I GAANNNNTTC 1 cut(s) 1106
AspS9I GGNCC 2 cut(s) 287, 549
AsuC2I CCSGG 2 cut(s) 547, 548
AsuHPI GGTGA 2 cut(s) 919, 1058
AvaI CYCGRG 1 cut(s) 546
AvaII GGWCC 1 cut(s) 287
BaeGI GKGCMC 2 cut(s) 18, 1031
BanI GGYRCC 1 cut(s) 175
BbsI GAAGAC 3 cut(s) 848, 924, 1001
Bbv12I GWGCWC 3 cut(s) 18, 28, 718
BbvI GCAGC 5 cut(s) 431, 597, 779, 1088, 1162
BccI CCATC 2 cut(s) 143, 742
BceAI ACGGC 1 cut(s) 34
BciT130I CCWGG 2 cut(s) 876, 1127
BclI TGATCA 2 cut(s) 508, 849
BcnI CCSGG 2 cut(s) 547, 548
BcoDI GTCTC 3 cut(s) 192, 515, 1110
BfaI CTAG 4 cut(s) 344, 696, 936, 1122
BfmI CTRYAG 3 cut(s) 417, 501, 1074
BisI GCNGC 6 cut(s) 420, 423, 586, 793, 1077, 1151
BlpI GCTNAGC 1 cut(s) 66
BlsI GCNGC 6 cut(s) 421, 424, 587, 794, 1078, 1152
Bme1390I CCNGG 4 cut(s) 547, 548, 876, 1127
Bme18I GGWCC 1 cut(s) 287
BmeT110I CYCGRG 1 cut(s) 546
BmgT120I GGNCC 2 cut(s) 287, 549
BmiI GGNNCC 1 cut(s) 177
BmrFI CCNGG 4 cut(s) 547, 548, 876, 1127
BmsI GCATC 3 cut(s) 422, 959, 1048
BpiI GAAGAC 3 cut(s) 848, 924, 1001
BpmI CTGGAG 2 cut(s) 402, 756
Bpu1102I GCTNAGC 1 cut(s) 66
BpuMI CCSGG 2 cut(s) 547, 548
Bsa29I ATCGAT 1 cut(s) 273
BsaAI YACGTR 1 cut(s) 1048
BsaBI GATNNNNATC 1 cut(s) 1062
BsaHI GRCGYC 2 cut(s) 804, 921
BsaI GGTCTC 1 cut(s) 1110
BsaJI CCNNGG 3 cut(s) 246, 318, 546
BsaXI ACNNNNNCTCC 4 cut(s) 375, 405, 736, 766
Bsc4I CCNNNNNNNGG 2 cut(s) 266, 1126
Bse1I ACTGG 3 cut(s) 298, 448, 1042
Bse3DI GCAATG 5 cut(s) 189, 313, 552, 595, 900
Bse8I GATNNNNATC 1 cut(s) 1062
BseBI CCWGG 2 cut(s) 876, 1127
BseCI ATCGAT 1 cut(s) 273
BseDI CCNNGG 3 cut(s) 246, 318, 546
BseGI GGATG 3 cut(s) 753, 974, 1063
BseJI GATNNNNATC 1 cut(s) 1062
BseLI CCNNNNNNNGG 2 cut(s) 266, 1126
BseMI GCAATG 5 cut(s) 189, 313, 552, 595, 900
BseMII CTCAG 2 cut(s) 698, 810
BseNI ACTGG 3 cut(s) 298, 448, 1042
BseRI GAGGAG 1 cut(s) 31
BseSI GKGCMC 2 cut(s) 18, 1031
BseXI GCAGC 5 cut(s) 431, 597, 779, 1088, 1162
BsgI GTGCAG 2 cut(s) 143, 552
BshFI GGCC 2 cut(s) 251, 551
BshNI GGYRCC 1 cut(s) 175
BshVI ATCGAT 1 cut(s) 273
BsiHKAI GWGCWC 3 cut(s) 18, 28, 718
BsiHKCI CYCGRG 1 cut(s) 546
BsiSI CCGG 1 cut(s) 547
BslI CCNNNNNNNGG 2 cut(s) 266, 1126
BsmAI GTCTC 3 cut(s) 192, 515, 1110
BsnI GGCC 2 cut(s) 251, 551
Bso31I GGTCTC 1 cut(s) 1110
BsoBI CYCGRG 1 cut(s) 546
Bsp1286I GDGCHC 4 cut(s) 18, 28, 718, 1031
Bsp143I GATC 4 cut(s) 385, 508, 661, 849
Bsp1720I GCTNAGC 1 cut(s) 66
Bsp19I CCATGG 1 cut(s) 318
BspACI CCGC 3 cut(s) 21, 285, 423
BspANI GGCC 2 cut(s) 251, 551
BspCNI CTCAG 2 cut(s) 697, 809
BspDI ATCGAT 1 cut(s) 273
BspLI GGNNCC 1 cut(s) 177
BspMAI CTGCAG 2 cut(s) 421, 1078
BspT107I GGYRCC 1 cut(s) 175
BspTNI GGTCTC 1 cut(s) 1110
BsrDI GCAATG 5 cut(s) 189, 313, 552, 595, 900
BsrI ACTGG 3 cut(s) 298, 448, 1042
BssECI CCNNGG 3 cut(s) 246, 318, 546
BssMI GATC 4 cut(s) 385, 508, 661, 849
BssNI GRCGYC 2 cut(s) 804, 921
BssT1I CCWWGG 2 cut(s) 246, 318
Bst2UI CCWGG 2 cut(s) 876, 1127
Bst4CI ACNGT 2 cut(s) 505, 1026
BstACI GRCGYC 2 cut(s) 804, 921
BstBAI YACGTR 1 cut(s) 1048
BstC8I GCNNGC 3 cut(s) 126, 180, 1155
BstDEI CTNAG 4 cut(s) 66, 684, 769, 796
BstDSI CCRYGG 1 cut(s) 318
BstF5I GGATG 3 cut(s) 753, 974, 1063
BstKTI GATC 4 cut(s) 388, 511, 664, 852
BstMAI GTCTC 3 cut(s) 192, 515, 1110
BstMBI GATC 4 cut(s) 385, 508, 661, 849
BstMWI GCNNNNNNNGC 1 cut(s) 419
BstNI CCWGG 2 cut(s) 876, 1127
BstNSI RCATGY 1 cut(s) 1008
BstSCI CCNGG 4 cut(s) 545, 546, 874, 1125
BstSFI CTRYAG 3 cut(s) 417, 501, 1074
BstSLI GKGCMC 2 cut(s) 18, 1031
BstV1I GCAGC 5 cut(s) 431, 597, 779, 1088, 1162
BstV2I GAAGAC 3 cut(s) 848, 924, 1001
Bsu15I ATCGAT 1 cut(s) 273
BsuRI GGCC 2 cut(s) 251, 551
BsuTUI ATCGAT 1 cut(s) 273
BtgI CCRYGG 1 cut(s) 318
BtsCI GGATG 3 cut(s) 753, 974, 1063
BtsIMutI CAGTG 3 cut(s) 441, 958, 1117
Cac8I GCNNGC 3 cut(s) 126, 180, 1155
CaiI CAGNNNCTG 1 cut(s) 425
Cfr13I GGNCC 2 cut(s) 287, 549
Cfr9I CCCGGG 1 cut(s) 546
ClaI ATCGAT 1 cut(s) 273
CsiI ACCWGGT 1 cut(s) 874
Csp6I GTAC 3 cut(s) 153, 367, 1045
CviAII CATG 6 cut(s) 61, 115, 319, 398, 1005, 1138
CviQI GTAC 3 cut(s) 153, 367, 1045
DdeI CTNAG 4 cut(s) 66, 684, 769, 796
DpnI GATC 4 cut(s) 387, 510, 663, 851
DpnII GATC 4 cut(s) 385, 508, 661, 849
DrdI GACNNNNNNGTC 1 cut(s) 294
DseDI GACNNNNNNGTC 1 cut(s) 294
EciI GGCGGA 1 cut(s) 300
Eco130I CCWWGG 2 cut(s) 246, 318
Eco31I GGTCTC 1 cut(s) 1110
Eco32I GATATC 1 cut(s) 439
Eco47I GGWCC 1 cut(s) 287
Eco57I CTGAAG 2 cut(s) 150, 393
Eco88I CYCGRG 1 cut(s) 546
EcoRII CCWGG 2 cut(s) 874, 1125
EcoRV GATATC 1 cut(s) 439
EcoT14I CCWWGG 2 cut(s) 246, 318
EcoT22I ATGCAT 2 cut(s) 415, 1063
ErhI CCWWGG 2 cut(s) 246, 318
FaeI CATG 6 cut(s) 64, 118, 322, 401, 1008, 1141
FalI AAGNNNNNCTT 2 cut(s) 59, 91
FatI CATG 6 cut(s) 60, 114, 318, 397, 1004, 1137
FbaI TGATCA 2 cut(s) 508, 849
Fnu4HI GCNGC 6 cut(s) 420, 423, 586, 793, 1077, 1151
FokI GGATG 3 cut(s) 760, 981, 1070
Fsp4HI GCNGC 6 cut(s) 420, 423, 586, 793, 1077, 1151
FspBI CTAG 4 cut(s) 344, 696, 936, 1122
GluI GCNGC 6 cut(s) 420, 423, 586, 793, 1077, 1151
GsuI CTGGAG 2 cut(s) 402, 756
HaeIII GGCC 2 cut(s) 251, 551
HapII CCGG 1 cut(s) 547
Hin1I GRCGYC 2 cut(s) 804, 921
Hin1II CATG 6 cut(s) 64, 118, 322, 401, 1008, 1141
HincII GTYRAC 1 cut(s) 479
HindII GTYRAC 1 cut(s) 479
HindIII AAGCTT 2 cut(s) 375, 1104
HinfI GANTC 7 cut(s) 200, 270, 429, 523, 634, 948, 961
HpaII CCGG 1 cut(s) 547
HphI GGTGA 2 cut(s) 919, 1058
Hpy166II GTNNAC 4 cut(s) 16, 479, 1084, 1132
Hpy188I TCNGA 6 cut(s) 30, 197, 207, 373, 513, 799
Hpy188III TCNNGA 4 cut(s) 146, 381, 496, 1037
Hpy8I GTNNAC 4 cut(s) 16, 479, 1084, 1132
Hpy99I CGWCG 1 cut(s) 926
HpyAV CCTTC 3 cut(s) 121, 246, 835
HpyCH4III ACNGT 2 cut(s) 505, 1026
HpyCH4IV ACGT 3 cut(s) 804, 921, 1047
HpyF10VI GCNNNNNNNGC 1 cut(s) 419
HpyF3I CTNAG 4 cut(s) 66, 684, 769, 796
HpySE526I ACGT 3 cut(s) 804, 921, 1047
Hsp92I GRCGYC 2 cut(s) 804, 921
Hsp92II CATG 6 cut(s) 64, 118, 322, 401, 1008, 1141
Ksp22I TGATCA 2 cut(s) 508, 849
Kzo9I GATC 4 cut(s) 385, 508, 661, 849
Lsp1109I GCAGC 5 cut(s) 431, 597, 779, 1088, 1162
LweI GCATC 3 cut(s) 422, 959, 1048
MabI ACCWGGT 1 cut(s) 874
MaeI CTAG 4 cut(s) 344, 696, 936, 1122
MaeII ACGT 3 cut(s) 804, 921, 1047
MaeIII GTNAC 4 cut(s) 311, 925, 986, 1037
MalI GATC 4 cut(s) 387, 510, 663, 851
MboI GATC 4 cut(s) 385, 508, 661, 849
MboII GAAGA 5 cut(s) 81, 732, 853, 929, 1001
MhlI GDGCHC 4 cut(s) 18, 28, 718, 1031
MluCI AATT 8 cut(s) 338, 357, 406, 604, 653, 999, 1092, 1177
MlyI GAGTC 2 cut(s) 194, 517
MmeI TCCRAC 1 cut(s) 556
MnlI CCTC 7 cut(s) 52, 156, 242, 738, 793, 876, 986
Mph1103I ATGCAT 2 cut(s) 415, 1063
MroXI GAANNNNTTC 1 cut(s) 1106
MseI TTAA 4 cut(s) 356, 861, 1091, 1164
MslI CAYNNNNRTG 2 cut(s) 21, 119
MspA1I CMGCKG 2 cut(s) 425, 1079
MspI CCGG 1 cut(s) 547
MspR9I CCNGG 4 cut(s) 547, 548, 876, 1127
MvaI CCWGG 2 cut(s) 876, 1127
MwoI GCNNNNNNNGC 1 cut(s) 419
NciI CCSGG 2 cut(s) 547, 548
NcoI CCATGG 1 cut(s) 318
NdeII GATC 4 cut(s) 385, 508, 661, 849
NlaIII CATG 6 cut(s) 64, 118, 322, 401, 1008, 1141
NlaIV GGNNCC 1 cut(s) 177
NmuCI GTSAC 2 cut(s) 925, 1037
NsiI ATGCAT 2 cut(s) 415, 1063
NspI RCATGY 1 cut(s) 1008
OliI CACNNNNGTG 1 cut(s) 21
PciI ACATGT 1 cut(s) 1004
PdmI GAANNNNTTC 1 cut(s) 1106
PfeI GAWTC 5 cut(s) 270, 429, 634, 948, 961
PflFI GACNNNGTC 1 cut(s) 923
PkrI GCNGC 6 cut(s) 421, 424, 587, 794, 1078, 1152
PleI GAGTC 2 cut(s) 194, 517
PpsI GAGTC 2 cut(s) 194, 517
Ppu21I YACGTR 1 cut(s) 1048
PscI ACATGT 1 cut(s) 1004
Psp6I CCWGG 2 cut(s) 874, 1125
PspGI CCWGG 2 cut(s) 874, 1125
PspN4I GGNNCC 1 cut(s) 177
PspPI GGNCC 2 cut(s) 287, 549
PstI CTGCAG 2 cut(s) 421, 1078
PstNI CAGNNNCTG 1 cut(s) 425
PsyI GACNNNGTC 1 cut(s) 923
PvuII CAGCTG 1 cut(s) 1079
RsaI GTAC 3 cut(s) 154, 368, 1046
RsaNI GTAC 3 cut(s) 153, 367, 1045
RseI CAYNNNNRTG 2 cut(s) 21, 119
SaqAI TTAA 4 cut(s) 356, 861, 1091, 1164
SatI GCNGC 6 cut(s) 420, 423, 586, 793, 1077, 1151
Sau3AI GATC 4 cut(s) 385, 508, 661, 849
Sau96I GGNCC 2 cut(s) 287, 549
SchI GAGTC 2 cut(s) 194, 517
ScrFI CCNGG 4 cut(s) 547, 548, 876, 1127
SduI GDGCHC 4 cut(s) 18, 28, 718, 1031
SexAI ACCWGGT 1 cut(s) 874
SfaNI GCATC 3 cut(s) 422, 959, 1048
SfcI CTRYAG 3 cut(s) 417, 501, 1074
SinI GGWCC 1 cut(s) 287
SmaI CCCGGG 1 cut(s) 548
SmiMI CAYNNNNRTG 2 cut(s) 21, 119
SrfI GCCCGGGC 1 cut(s) 548
Sse9I AATT 8 cut(s) 338, 357, 406, 604, 653, 999, 1092, 1177
SsiI CCGC 3 cut(s) 21, 285, 423
SspMI CTAG 4 cut(s) 344, 696, 936, 1122
StyD4I CCNGG 4 cut(s) 545, 546, 874, 1125
StyI CCWWGG 2 cut(s) 246, 318
TaaI ACNGT 2 cut(s) 505, 1026
TaiI ACGT 3 cut(s) 807, 924, 1050
TaqI TCGA 4 cut(s) 273, 718, 881, 907
TasI AATT 8 cut(s) 338, 357, 406, 604, 653, 999, 1092, 1177
TauI GCSGC 1 cut(s) 425
TfiI GAWTC 5 cut(s) 270, 429, 634, 948, 961
Tru1I TTAA 4 cut(s) 356, 861, 1091, 1164
Tru9I TTAA 4 cut(s) 356, 861, 1091, 1164
TscAI CASTG 3 cut(s) 448, 958, 1117
TseFI GTSAC 2 cut(s) 925, 1037
TseI GCWGC 5 cut(s) 419, 585, 792, 1076, 1150
Tsp45I GTSAC 2 cut(s) 925, 1037
TspDTI ATGAA 9 cut(s) 45, 49, 103, 178, 228, 342, 386, 877, 1154
TspGWI ACGGA 1 cut(s) 533
TspMI CCCGGG 1 cut(s) 546
TspRI CASTG 3 cut(s) 448, 958, 1117
Tth111I GACNNNGTC 1 cut(s) 923
VneI GTGCAC 1 cut(s) 14
VpaK11BI GGWCC 1 cut(s) 287
XceI RCATGY 1 cut(s) 1008
XcmI CCANNNNNNNNNTGG 1 cut(s) 782
XmaI CCCGGG 1 cut(s) 546
XmnI GAANNNNTTC 1 cut(s) 1106
XspI CTAG 4 cut(s) 344, 696, 936, 1122
ZraI GACGTC 2 cut(s) 805, 922
Zsp2I ATGCAT 2 cut(s) 415, 1063
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.