Rmu_sc0000632.1_g000006

post-GPI attachment to proteins factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000632.1
OG0007052
Physical Location & Seq
Forward (+)
35861 .. 41215
5355 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1257 bp
atgttggtttcaatatggttgaacgagtttcaggcccagactaatttaacgtccgagcccaaactagctttagattctcgaccctttttccggcccaaacccgaaatcaatctgaacttagaagcagctgttgagctttttgaatgggtcagaccgtcactattgccaaggaagaagaagaaagagagagacagaggttccggtggtccgatgttaaagcagtactgggttgctttctttgtggtggttttatggggttttggattcagagctatagatgccagtgctggtgatgctgatcctcattatagggcttgtttacaacaatgtgaagaaactggatgtgtagcgcagagatgctttccacattgcaatttctcttcagttggggtttccgttgatgggccatggttcctgcaagaacctctttatttgcagtggaaacaatgggactgtcagagtgattgccgttactattgtatggttgacagagagaaagaaagagaagcagctggttatggcccagtcaaatatcatggtaaatggcccttcaagcgcgtttatggaatccaggagcctgcttctgtagctttctctgcgctcaaccttgctatgcattttcatggttgggtatcacttatcatccttttattctataagttaccattgagacgagataagaaggcatattatgactatgccggtttgtggcatatatatggtttcttatccttgaacagctggttctggagtgctgttttccatagtagagatgtggatttgaccgaaaaattagattactcagctgcagtggcattacttgggtactcgctcattcttgccatacttagaagttttgatgtgagggatgatgctgtcagagttatggttgctgctccactgcttgcttttgtaactacccacatattgtatctcaacttttataaactggattatggttggaacatgaaagtttgtgttgtcatggcggtggctcaacttcttatctgggcggtttgggctggtgtcacccgccatccatctcgttggaaattgtggctggtagtagttggaggcggtcttgcaatgctcctagaaatctatgatttccccccatatgaaggatttctggatgctcatgcggtctggcatgccaccaccatccccctaacttacatttggtggagtttcatcagagacgacgctgagttcctaacctctaaccaagtaaagaagctggcaaagaaggcaaaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Per1

Protein Analysis

418

Amino Acids

48.36

Weight (kDa)

8.69

Isoelectric Point (pI)

39.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Per1 PF04080 142 - 402 1.5e-98 Per1-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 945
AccII CGCG 1 cut(s) 558
AciI CCGC 5 cut(s) 989, 1013, 1033, 1077, 1142
AclWI GGATC 1 cut(s) 293
AcuI CTGAAG 1 cut(s) 366
AfaI GTAC 2 cut(s) 224, 827
AfiI CCNNNNNNNGG 4 cut(s) 90, 402, 708, 1121
AgsI TTSAA 5 cut(s) 12, 22, 143, 553, 736
AjnI CCWGG 1 cut(s) 570
AluBI AGCT 9 cut(s) 68, 128, 136, 272, 512, 590, 741, 806, 1237
AluI AGCT 9 cut(s) 68, 128, 136, 272, 512, 590, 741, 806, 1237
Alw26I GTCTC 3 cut(s) 183, 664, 1191
AlwI GGATC 1 cut(s) 293
AoxI GGCC 5 cut(s) 33, 92, 404, 520, 545
ApeKI GCWGC 4 cut(s) 125, 509, 806, 893
Asp700I GAANNNNTTC 1 cut(s) 1125
AspLEI GCGC 3 cut(s) 352, 558, 601
AspS9I GGNCC 6 cut(s) 34, 93, 206, 404, 521, 546
AsuHPI GGTGA 2 cut(s) 302, 1021
AvaII GGWCC 1 cut(s) 206
BanII GRGCYC 1 cut(s) 60
BbvI GCAGC 4 cut(s) 137, 521, 793, 880
BccI CCATC 4 cut(s) 395, 1044, 1048, 1169
BceAI ACGGC 1 cut(s) 453
BciT130I CCWGG 1 cut(s) 572
BcoDI GTCTC 3 cut(s) 183, 664, 1191
BfaI CTAG 2 cut(s) 65, 1094
BfmI CTRYAG 3 cut(s) 273, 585, 807
BisI GCNGC 4 cut(s) 126, 510, 807, 894
BlsI GCNGC 4 cut(s) 127, 511, 808, 895
BmcAI AGTACT 1 cut(s) 224
Bme1390I CCNGG 1 cut(s) 572
Bme18I GGWCC 1 cut(s) 206
BmgT120I GGNCC 6 cut(s) 34, 93, 206, 404, 521, 546
BmiI GGNNCC 3 cut(s) 199, 413, 576
BmrFI CCNGG 1 cut(s) 572
BmrI ACTGGG 2 cut(s) 235, 518
BmsI GCATC 5 cut(s) 268, 283, 347, 862, 1123
BmuI ACTGGG 2 cut(s) 235, 518
BpmI CTGGAG 1 cut(s) 769
BsaBI GATNNNNATC 1 cut(s) 297
BsaJI CCNNGG 2 cut(s) 167, 407
BsaWI WCCGGW 1 cut(s) 200
Bsc4I CCNNNNNNNGG 4 cut(s) 90, 402, 708, 1121
Bse118I RCCGGY 1 cut(s) 701
Bse1I ACTGG 5 cut(s) 230, 282, 343, 524, 954
Bse3DI GCAATG 2 cut(s) 367, 1092
Bse8I GATNNNNATC 1 cut(s) 297
BseBI CCWGG 1 cut(s) 572
BseDI CCNNGG 2 cut(s) 167, 407
BseGI GGATG 6 cut(s) 347, 642, 874, 1036, 1138, 1161
BseJI GATNNNNATC 1 cut(s) 297
BseLI CCNNNNNNNGG 4 cut(s) 90, 402, 708, 1121
BseMI GCAATG 2 cut(s) 367, 1092
BseMII CTCAG 2 cut(s) 816, 1197
BseNI ACTGG 5 cut(s) 230, 282, 343, 524, 954
BseXI GCAGC 4 cut(s) 137, 521, 793, 880
Bsh1236I CGCG 1 cut(s) 558
BshFI GGCC 5 cut(s) 35, 94, 406, 522, 547
BsiSI CCGG 3 cut(s) 91, 201, 702
BslFI GGGAC 1 cut(s) 464
BslI CCNNNNNNNGG 4 cut(s) 90, 402, 708, 1121
BsmAI GTCTC 3 cut(s) 183, 664, 1191
BsmBI CGTCTC 2 cut(s) 664, 1191
BsmFI GGGAC 1 cut(s) 464
BsnI GGCC 5 cut(s) 35, 94, 406, 522, 547
Bsp1286I GDGCHC 1 cut(s) 60
Bsp143I GATC 1 cut(s) 298
Bsp19I CCATGG 1 cut(s) 407
BspACI CCGC 5 cut(s) 989, 1013, 1033, 1077, 1142
BspANI GGCC 5 cut(s) 35, 94, 406, 522, 547
BspCNI CTCAG 2 cut(s) 815, 1198
BspFNI CGCG 1 cut(s) 558
BspLI GGNNCC 3 cut(s) 199, 413, 576
BspMAI CTGCAG 1 cut(s) 811
BspPI GGATC 1 cut(s) 293
BsrDI GCAATG 2 cut(s) 367, 1092
BsrFI RCCGGY 1 cut(s) 701
BsrI ACTGG 5 cut(s) 230, 282, 343, 524, 954
BssAI RCCGGY 1 cut(s) 701
BssECI CCNNGG 2 cut(s) 167, 407
BssMI GATC 1 cut(s) 298
BssT1I CCWWGG 2 cut(s) 167, 407
Bst2UI CCWGG 1 cut(s) 572
Bst4CI ACNGT 2 cut(s) 156, 455
Bst6I CTCTTC 1 cut(s) 385
BstC8I GCNNGC 4 cut(s) 579, 906, 1152, 1239
BstDEI CTNAG 4 cut(s) 118, 802, 848, 1206
BstDSI CCRYGG 1 cut(s) 407
BstF5I GGATG 6 cut(s) 347, 642, 874, 1036, 1138, 1161
BstFNI CGCG 1 cut(s) 558
BstHHI GCGC 3 cut(s) 352, 558, 601
BstKTI GATC 1 cut(s) 301
BstMAI GTCTC 3 cut(s) 183, 664, 1191
BstMBI GATC 1 cut(s) 298
BstMWI GCNNNNNNNGC 8 cut(s) 278, 293, 553, 587, 596, 812, 1019, 1247
BstNI CCWGG 1 cut(s) 572
BstNSI RCATGY 1 cut(s) 1154
BstSCI CCNGG 1 cut(s) 570
BstSFI CTRYAG 3 cut(s) 273, 585, 807
BstUI CGCG 1 cut(s) 558
BstV1I GCAGC 4 cut(s) 137, 521, 793, 880
BstXI CCANNNNNNTGG 1 cut(s) 1047
BsuRI GGCC 5 cut(s) 35, 94, 406, 522, 547
BtgI CCRYGG 1 cut(s) 407
BtsCI GGATG 6 cut(s) 347, 642, 874, 1036, 1138, 1161
BtsI GCAGTG 3 cut(s) 443, 816, 899
BtsIMutI CAGTG 4 cut(s) 289, 443, 816, 899
Cac8I GCNNGC 4 cut(s) 579, 906, 1152, 1239
CfoI GCGC 3 cut(s) 352, 558, 601
Cfr10I RCCGGY 1 cut(s) 701
Cfr13I GGNCC 6 cut(s) 34, 93, 206, 404, 521, 546
CseI GACGC 1 cut(s) 1211
Csp6I GTAC 2 cut(s) 223, 826
CviAII CATG 7 cut(s) 408, 536, 623, 967, 985, 1139, 1151
CviQI GTAC 2 cut(s) 223, 826
DdeI CTNAG 4 cut(s) 118, 802, 848, 1206
DpnI GATC 1 cut(s) 300
DpnII GATC 1 cut(s) 298
Eam1104I CTCTTC 1 cut(s) 385
EarI CTCTTC 1 cut(s) 385
Eco130I CCWWGG 2 cut(s) 167, 407
Eco24I GRGCYC 1 cut(s) 60
Eco47I GGWCC 1 cut(s) 206
Eco57I CTGAAG 1 cut(s) 366
EcoRII CCWGG 1 cut(s) 570
EcoT14I CCWWGG 2 cut(s) 167, 407
EcoT22I ATGCAT 1 cut(s) 618
EcoT38I GRGCYC 1 cut(s) 60
ErhI CCWWGG 2 cut(s) 167, 407
Esp3I CGTCTC 2 cut(s) 664, 1191
FaeI CATG 7 cut(s) 411, 539, 626, 970, 988, 1142, 1154
FalI AAGNNNNNCTT 2 cut(s) 411, 443
FaqI GGGAC 1 cut(s) 464
FatI CATG 7 cut(s) 407, 535, 622, 966, 984, 1138, 1150
FauI CCCGC 1 cut(s) 1040
FauNDI CATATG 1 cut(s) 1117
Fnu4HI GCNGC 4 cut(s) 126, 510, 807, 894
FokI GGATG 6 cut(s) 354, 629, 881, 1023, 1145, 1148
FriOI GRGCYC 1 cut(s) 60
Fsp4HI GCNGC 4 cut(s) 126, 510, 807, 894
FspBI CTAG 2 cut(s) 65, 1094
GlaI GCGC 3 cut(s) 351, 557, 600
GluI GCNGC 4 cut(s) 126, 510, 807, 894
GsuI CTGGAG 1 cut(s) 769
HaeIII GGCC 5 cut(s) 35, 94, 406, 522, 547
HapII CCGG 3 cut(s) 91, 201, 702
HgaI GACGC 1 cut(s) 1211
HhaI GCGC 3 cut(s) 352, 558, 601
Hin1II CATG 7 cut(s) 411, 539, 626, 970, 988, 1142, 1154
Hin6I GCGC 3 cut(s) 350, 556, 599
HinP1I GCGC 3 cut(s) 350, 556, 599
HincII GTYRAC 1 cut(s) 487
HindII GTYRAC 1 cut(s) 487
HinfI GANTC 3 cut(s) 74, 264, 567
HpaII CCGG 3 cut(s) 91, 201, 702
HphI GGTGA 2 cut(s) 302, 1021
Hpy166II GTNNAC 2 cut(s) 320, 487
Hpy188I TCNGA 8 cut(s) 55, 114, 152, 210, 269, 459, 881, 1196
Hpy188III TCNNGA 3 cut(s) 78, 748, 1130
Hpy8I GTNNAC 2 cut(s) 320, 487
Hpy99I CGWCG 1 cut(s) 1205
HpyAV CCTTC 4 cut(s) 559, 676, 1115, 1240
HpyCH4III ACNGT 2 cut(s) 156, 455
HpyCH4IV ACGT 1 cut(s) 50
HpyCH4V TGCA 6 cut(s) 372, 418, 436, 616, 809, 1085
HpyF10VI GCNNNNNNNGC 8 cut(s) 278, 293, 553, 587, 596, 812, 1019, 1247
HpyF3I CTNAG 4 cut(s) 118, 802, 848, 1206
HpySE526I ACGT 1 cut(s) 50
Hsp92II CATG 7 cut(s) 411, 539, 626, 970, 988, 1142, 1154
HspAI GCGC 3 cut(s) 350, 556, 599
Kzo9I GATC 1 cut(s) 298
LmnI GCTCC 3 cut(s) 574, 901, 1095
Lsp1109I GCAGC 4 cut(s) 137, 521, 793, 880
LweI GCATC 5 cut(s) 268, 283, 347, 862, 1123
MaeI CTAG 2 cut(s) 65, 1094
MaeII ACGT 1 cut(s) 50
MaeIII GTNAC 5 cut(s) 156, 470, 660, 913, 1027
MalI GATC 1 cut(s) 300
MboI GATC 1 cut(s) 298
MboII GAAGA 5 cut(s) 184, 187, 190, 344, 372
MhlI GDGCHC 1 cut(s) 60
MluCI AATT 4 cut(s) 43, 373, 791, 1052
MmeI TCCRAC 3 cut(s) 941, 1028, 1051
MnlI CCTC 6 cut(s) 188, 312, 435, 858, 1067, 1228
Mph1103I ATGCAT 1 cut(s) 618
MroXI GAANNNNTTC 1 cut(s) 1125
MseI TTAA 2 cut(s) 47, 215
MslI CAYNNNNRTG 3 cut(s) 621, 717, 989
MspA1I CMGCKG 4 cut(s) 128, 512, 741, 806
MspI CCGG 3 cut(s) 91, 201, 702
MspR9I CCNGG 1 cut(s) 572
MvaI CCWGG 1 cut(s) 572
MvnI CGCG 1 cut(s) 558
MwoI GCNNNNNNNGC 8 cut(s) 278, 293, 553, 587, 596, 812, 1019, 1247
NcoI CCATGG 1 cut(s) 407
NdeI CATATG 1 cut(s) 1117
NdeII GATC 1 cut(s) 298
NlaIII CATG 7 cut(s) 411, 539, 626, 970, 988, 1142, 1154
NlaIV GGNNCC 3 cut(s) 199, 413, 576
NmuCI GTSAC 2 cut(s) 156, 1027
NsiI ATGCAT 1 cut(s) 618
NspI RCATGY 1 cut(s) 1154
PaeI GCATGC 1 cut(s) 1154
PdmI GAANNNNTTC 1 cut(s) 1125
PfeI GAWTC 3 cut(s) 74, 264, 567
PfoI TCCNGGA 1 cut(s) 570
PkrI GCNGC 4 cut(s) 127, 511, 808, 895
PsiI TTATAA 1 cut(s) 945
Psp6I CCWGG 1 cut(s) 570
PspGI CCWGG 1 cut(s) 570
PspN4I GGNNCC 3 cut(s) 199, 413, 576
PspPI GGNCC 6 cut(s) 34, 93, 206, 404, 521, 546
PstI CTGCAG 1 cut(s) 811
PvuII CAGCTG 4 cut(s) 128, 512, 741, 806
RsaI GTAC 2 cut(s) 224, 827
RsaNI GTAC 2 cut(s) 223, 826
RseI CAYNNNNRTG 3 cut(s) 621, 717, 989
SaqAI TTAA 2 cut(s) 47, 215
SatI GCNGC 4 cut(s) 126, 510, 807, 894
Sau3AI GATC 1 cut(s) 298
Sau96I GGNCC 6 cut(s) 34, 93, 206, 404, 521, 546
ScaI AGTACT 1 cut(s) 224
ScrFI CCNGG 1 cut(s) 572
SduI GDGCHC 1 cut(s) 60
SfaNI GCATC 5 cut(s) 268, 283, 347, 862, 1123
SfcI CTRYAG 3 cut(s) 273, 585, 807
SinI GGWCC 1 cut(s) 206
SmiMI CAYNNNNRTG 3 cut(s) 621, 717, 989
SphI GCATGC 1 cut(s) 1154
Sse9I AATT 4 cut(s) 43, 373, 791, 1052
SsiI CCGC 5 cut(s) 989, 1013, 1033, 1077, 1142
SspMI CTAG 2 cut(s) 65, 1094
StyD4I CCNGG 1 cut(s) 570
StyI CCWWGG 2 cut(s) 167, 407
TaaI ACNGT 2 cut(s) 156, 455
TaiI ACGT 1 cut(s) 53
TaqI TCGA 1 cut(s) 79
TaqII GACCGA 1 cut(s) 800
TasI AATT 4 cut(s) 43, 373, 791, 1052
TatI WGTACW 1 cut(s) 222
TfiI GAWTC 3 cut(s) 74, 264, 567
Tru1I TTAA 2 cut(s) 47, 215
Tru9I TTAA 2 cut(s) 47, 215
TscAI CASTG 4 cut(s) 289, 443, 816, 906
TseFI GTSAC 2 cut(s) 156, 1027
TseI GCWGC 4 cut(s) 125, 509, 806, 893
Tsp45I GTSAC 2 cut(s) 156, 1027
TspDTI ATGAA 4 cut(s) 611, 983, 1134, 1180
TspGWI ACGGA 1 cut(s) 385
TspRI CASTG 4 cut(s) 289, 443, 816, 906
VpaK11BI GGWCC 1 cut(s) 206
XceI RCATGY 1 cut(s) 1154
XmnI GAANNNNTTC 1 cut(s) 1125
XspI CTAG 2 cut(s) 65, 1094
ZrmI AGTACT 1 cut(s) 224
Zsp2I ATGCAT 1 cut(s) 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.