Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000642.1

Orthogroup ID

OG0009508

Physical Location & Seq

Genomic Coordinates Forward (+)

208518 .. 212302

Gene Structure 3785 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000642.1_g000031.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1419 bp

atggcttaccatggaggcaatctcaagtcgacctccatcaatggcgtcaagatgtacagcgttgcttctcagcaaccctctctcgccacctggcttgaccccaacaagcgtcgagccctccgcaaagacaaaaattatatgcaaagggtggacttgattcaggacctccgcttcgaaactgccaccaccaaaatcaaggccactcctgacggcgagttcctcattgcatcaggtatatacccgccccaagtcaaggtttatgagctcagggaacttgcactcaagtttgaaaggcacttggattctgagattattgattttgaggttttggctgatgattattcaaagcttgcgtttttatgtgccgatcgttctgtttatctacatgcaaaatatggaaaacattacagtttgcgcattccaagaatgggtagggatatggcttatgattgctggtcatgtgatttgctttgtgctgcctcttctccagaactttacagaattaatttggaacaggggcgttttttaacttccctcaacacacagtcgccagcgctaaatgtagtttctcgaagcaagcttcatggtttagttgcttgtggtggtgaagatggtgctgtggaatgttttgacttgagaatgaaatcttcagttggtaggattaatgctgttggacctgctggtgacattgaccaggaggtcacagcagtagagtttgatgaaaaaacgggtttcttaatggctgttggaagcagtgcagggaaggttctcgtctatgacttgcgttcatcacatcctatacaggtgaaggatcacatgtatggcagtccgatattagacattaagtggcatcaaactcttaattctgaacggccaaagttaattaccactgacaatcacgttgttagaatatgggaccctgacacaggagaaggaatgacaagcattgagcccacagctggagcaataaatgatatatgtacattccctggcagtggattgatgctgttggctctggactccagtcagataccatcgtatttcatacctgaactcggacctgctccaaattggtgttcttacctgcaaaatcttactgaagagttagaggagggtgcgcagacgaccatctatgatgattataaatttttgacaaaagaagaccttgagaggttgaggttgactaagctgattggaacgaatctactcagagcttacatgcatgggttctttgttcgttattcgttgtataaaaaggcaaaagctttggtagagccttttgatattagtgaatacattgaacagcagaaaaaggagaagctagaaaaagaatttgctggacagcgaattacggttagacactttcttctaaatattgtttgtatattgacaaactttatgattctctttgtactctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUC153

Protein Analysis

472

Amino Acids

53.36

Weight (kDa)

6.05

Isoelectric Point (pI)

47.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009508)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56990 AT3G56990 AT3G56990
fragaria_vesca	FvH4_2g11640 FvH4_2g11640
malus_domestica	MD06G1011700.v1.1
prunus_persica	Prupe.5G014500_v2.0.a1 Prupe.5G014500_v2.0.a1 Prupe.8G004300_v2.0.a1
pyrus_communis	pycom06g00990
rosa_chinensis	RchiOBHm_Chr6g0270881
rosa_laevigata	RLG00000013762
rosa_multiflora	Rmu_sc0000642.1_g000031 Rmu_sc0007274.1_g000001
rosa_roxburghii	Rroxscaffold_7G00197520
rosa_rugosa	Rorug06G0056900 Rorug06G0057000
rosa_samantha	Rh6AG176500 Rh6BG179900 Rh6CG175900 Rh6DG168200
rosa_wichuraiana	Rw6G015040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1143
AasI	GACNNNNNNGTC	1 cut(s)	698
Acc16I	TGCGCA	2 cut(s)	416, 1119
Acc36I	ACCTGC	3 cut(s)	685, 1069, 1092
AccI	GTMKAC	1 cut(s)	29
AciI	CCGC	3 cut(s)	121, 169, 242
AclWI	GGATC	1 cut(s)	819
AcoI	YGGCCR	1 cut(s)	872
AcsI	RAATTY	2 cut(s)	1145, 1331
AcuI	CTGAAG	2 cut(s)	633, 1119
AcyI	GRCGYC	1 cut(s)	45
AfaI	GTAC	3 cut(s)	56, 982, 1413
AfeI	AGCGCT	1 cut(s)	555
AfiI	CCNNNNNNNGG	6 cut(s)	253, 428, 926, 959, 995, 1055
AflIII	ACRYGT	1 cut(s)	816
AgsI	TTSAA	3 cut(s)	290, 345, 1301
AjnI	CCWGG	3 cut(s)	89, 693, 988
AjuI	GAANNNNNNNTTGG	2 cut(s)	1060, 1092
AluBI	AGCT	8 cut(s)	265, 349, 580, 959, 1189, 1214, 1265, 1321
AluI	AGCT	8 cut(s)	265, 349, 580, 959, 1189, 1214, 1265, 1321
Alw21I	GWGCWC	1 cut(s)	267
AlwI	GGATC	1 cut(s)	819
Aor51HI	AGCGCT	1 cut(s)	555
AoxI	GGCC	2 cut(s)	198, 872
ApeKI	GCWGC	1 cut(s)	476
ApoI	RAATTY	2 cut(s)	1145, 1331
ArsI	GACNNNNNNTTYG	2 cut(s)	155, 187
AseI	ATTAAT	2 cut(s)	504, 663
AspLEI	GCGC	3 cut(s)	417, 556, 1120
AspS9I	GGNCC	4 cut(s)	163, 674, 916, 1058
AsuHPI	GGTGA	3 cut(s)	617, 695, 817
AsuII	TTCGAA	1 cut(s)	174
AvaII	GGWCC	4 cut(s)	163, 674, 916, 1058
BaeI	ACNNNNGTAYC	2 cut(s)	1022, 1055
BanII	GRGCYC	3 cut(s)	118, 267, 954
BbsI	GAAGAC	1 cut(s)	1167
Bbv12I	GWGCWC	1 cut(s)	267
BbvI	GCAGC	1 cut(s)	463
BccI	CCATC	4 cut(s)	44, 605, 1042, 1136
BceAI	ACGGC	2 cut(s)	226, 887
BciT130I	CCWGG	3 cut(s)	91, 695, 990
BfaI	CTAG	2 cut(s)	1322, 1417
BfoI	RGCGCY	1 cut(s)	557
BfuAI	ACCTGC	3 cut(s)	685, 1069, 1092
BisI	GCNGC	1 cut(s)	477
BlsI	GCNGC	1 cut(s)	478
Bme1390I	CCNGG	3 cut(s)	91, 695, 990
Bme18I	GGWCC	4 cut(s)	163, 674, 916, 1058
BmgT120I	GGNCC	4 cut(s)	163, 674, 916, 1058
BmiI	GGNNCC	2 cut(s)	917, 918
BmrFI	CCNGG	3 cut(s)	91, 695, 990
BmsI	GCATC	3 cut(s)	236, 859, 993
BoxI	GACNNNNGTC	1 cut(s)	1023
BpiI	GAAGAC	1 cut(s)	1167
BplI	GAGNNNNNCTC	1 cut(s)	38
BpmI	CTGGAG	3 cut(s)	471, 981, 1006
Bpu10I	CCTNAGC	1 cut(s)	266
Bpu14I	TTCGAA	1 cut(s)	174
BpuEI	CTTGAG	4 cut(s)	8, 266, 655, 1187
BsaHI	GRCGYC	1 cut(s)	45
BsaJI	CCNNGG	2 cut(s)	10, 988
Bsc4I	CCNNNNNNNGG	6 cut(s)	253, 428, 926, 959, 995, 1055
Bse1I	ACTGG	1 cut(s)	1023
Bse3DI	GCAATG	1 cut(s)	222
BseBI	CCWGG	3 cut(s)	91, 695, 990
BseDI	CCNNGG	2 cut(s)	10, 988
BseGI	GGATG	1 cut(s)	793
BseLI	CCNNNNNNNGG	6 cut(s)	253, 428, 926, 959, 995, 1055
BseMI	GCAATG	1 cut(s)	222
BseMII	CTCAG	4 cut(s)	83, 280, 297, 1222
BseNI	ACTGG	1 cut(s)	1023
BseRI	GAGGAG	1 cut(s)	1124
BseXI	GCAGC	1 cut(s)	463
BsgI	GTGCAG	1 cut(s)	777
Bsh1285I	CGRYCG	1 cut(s)	370
BshFI	GGCC	2 cut(s)	200, 874
BsiEI	CGRYCG	1 cut(s)	370
BsiHKAI	GWGCWC	1 cut(s)	267
BslFI	GGGAC	1 cut(s)	929
BslI	CCNNNNNNNGG	6 cut(s)	253, 428, 926, 959, 995, 1055
BsmFI	GGGAC	1 cut(s)	929
BsmI	GAATGC	1 cut(s)	417
BsnI	GGCC	2 cut(s)	200, 874
Bsp119I	TTCGAA	1 cut(s)	174
Bsp1286I	GDGCHC	3 cut(s)	118, 267, 954
Bsp1407I	TGTACA	2 cut(s)	54, 980
Bsp143I	GATC	2 cut(s)	367, 811
Bsp19I	CCATGG	1 cut(s)	10
BspACI	CCGC	3 cut(s)	121, 169, 242
BspANI	GGCC	2 cut(s)	200, 874
BspCNI	CTCAG	4 cut(s)	82, 279, 298, 1221
BspLI	GGNNCC	2 cut(s)	917, 918
BspMI	ACCTGC	3 cut(s)	685, 1069, 1092
BspPI	GGATC	1 cut(s)	819
BspT104I	TTCGAA	1 cut(s)	174
BsrDI	GCAATG	1 cut(s)	222
BsrGI	TGTACA	2 cut(s)	54, 980
BsrI	ACTGG	1 cut(s)	1023
BssECI	CCNNGG	2 cut(s)	10, 988
BssMI	GATC	2 cut(s)	367, 811
BssNI	GRCGYC	1 cut(s)	45
BssT1I	CCWWGG	1 cut(s)	10
Bst2UI	CCWGG	3 cut(s)	91, 695, 990
Bst4CI	ACNGT	3 cut(s)	410, 546, 1354
Bst6I	CTCTTC	2 cut(s)	487, 1095
BstACI	GRCGYC	1 cut(s)	45
BstAUI	TGTACA	2 cut(s)	54, 980
BstBI	TTCGAA	1 cut(s)	174
BstC8I	GCNNGC	3 cut(s)	351, 552, 578
BstDEI	CTNAG	5 cut(s)	69, 266, 306, 1185, 1208
BstDSI	CCRYGG	1 cut(s)	10
BstENI	CCTNNNNNAGG	1 cut(s)	924
BstF5I	GGATG	1 cut(s)	793
BstH2I	RGCGCY	1 cut(s)	557
BstHHI	GCGC	3 cut(s)	417, 556, 1120
BstKTI	GATC	2 cut(s)	370, 814
BstMBI	GATC	2 cut(s)	367, 811
BstMCI	CGRYCG	1 cut(s)	370
BstNI	CCWGG	3 cut(s)	91, 695, 990
BstNSI	RCATGY	3 cut(s)	389, 820, 1222
BstPAI	GACNNNNGTC	1 cut(s)	1023
BstSCI	CCNGG	3 cut(s)	89, 693, 988
BstV1I	GCAGC	1 cut(s)	463
BstV2I	GAAGAC	1 cut(s)	1167
BsuRI	GGCC	2 cut(s)	200, 874
BtgI	CCRYGG	1 cut(s)	10
BtsCI	GGATG	1 cut(s)	793
BtsI	GCAGTG	2 cut(s)	760, 1000
BtsIMutI	CAGTG	3 cut(s)	760, 888, 1000
BveI	ACCTGC	3 cut(s)	685, 1069, 1092
Cac8I	GCNNGC	3 cut(s)	351, 552, 578
CfoI	GCGC	3 cut(s)	417, 556, 1120
Cfr13I	GGNCC	4 cut(s)	163, 674, 916, 1058
CseI	GACGC	2 cut(s)	34, 98
Csp6I	GTAC	3 cut(s)	55, 981, 1412
CspCI	CAANNNNNGTGG	2 cut(s)	76, 111
CviAII	CATG	7 cut(s)	11, 386, 459, 584, 817, 1219, 1223
CviQI	GTAC	3 cut(s)	55, 981, 1412
DdeI	CTNAG	5 cut(s)	69, 266, 306, 1185, 1208
DpnI	GATC	2 cut(s)	369, 813
DpnII	GATC	2 cut(s)	367, 811
DrdI	GACNNNNNNGTC	1 cut(s)	698
DseDI	GACNNNNNNGTC	1 cut(s)	698
EaeI	YGGCCR	1 cut(s)	872
Eam1104I	CTCTTC	2 cut(s)	487, 1095
EarI	CTCTTC	2 cut(s)	487, 1095
Ecl136II	GAGCTC	1 cut(s)	265
Eco130I	CCWWGG	1 cut(s)	10
Eco24I	GRGCYC	3 cut(s)	118, 267, 954
Eco47I	GGWCC	4 cut(s)	163, 674, 916, 1058
Eco47III	AGCGCT	1 cut(s)	555
Eco53kI	GAGCTC	1 cut(s)	265
Eco57I	CTGAAG	2 cut(s)	633, 1119
EcoICRI	GAGCTC	1 cut(s)	265
EcoNI	CCTNNNNNAGG	1 cut(s)	924
EcoO109I	RGGNCCY	2 cut(s)	163, 916
EcoRII	CCWGG	3 cut(s)	89, 693, 988
EcoT14I	CCWWGG	1 cut(s)	10
EcoT22I	ATGCAT	1 cut(s)	1224
EcoT38I	GRGCYC	3 cut(s)	118, 267, 954
ErhI	CCWWGG	1 cut(s)	10
FaeI	CATG	7 cut(s)	14, 389, 462, 587, 820, 1222, 1226
FalI	AAGNNNNNCTT	2 cut(s)	1149, 1181
FaqI	GGGAC	1 cut(s)	929
FatI	CATG	7 cut(s)	10, 385, 458, 583, 816, 1218, 1222
FauI	CCCGC	1 cut(s)	249
FblI	GTMKAC	1 cut(s)	29
Fnu4HI	GCNGC	1 cut(s)	477
FokI	GGATG	1 cut(s)	780
FriOI	GRGCYC	3 cut(s)	118, 267, 954
Fsp4HI	GCNGC	1 cut(s)	477
FspBI	CTAG	2 cut(s)	1322, 1417
FspI	TGCGCA	2 cut(s)	416, 1119
GlaI	GCGC	3 cut(s)	416, 555, 1119
GluI	GCNGC	1 cut(s)	477
GsuI	CTGGAG	3 cut(s)	471, 981, 1006
HaeII	RGCGCY	1 cut(s)	557
HaeIII	GGCC	2 cut(s)	200, 874
HgaI	GACGC	2 cut(s)	34, 98
HhaI	GCGC	3 cut(s)	417, 556, 1120
Hin1I	GRCGYC	1 cut(s)	45
Hin1II	CATG	7 cut(s)	14, 389, 462, 587, 820, 1222, 1226
Hin6I	GCGC	3 cut(s)	415, 554, 1118
HinP1I	GCGC	3 cut(s)	415, 554, 1118
HincII	GTYRAC	2 cut(s)	30, 1182
HindII	GTYRAC	2 cut(s)	30, 1182
HindIII	AAGCTT	3 cut(s)	347, 578, 1263
HinfI	GANTC	5 cut(s)	157, 302, 1019, 1201, 1402
HphI	GGTGA	3 cut(s)	617, 695, 817
Hpy166II	GTNNAC	3 cut(s)	30, 151, 1182
Hpy188I	TCNGA	6 cut(s)	307, 831, 868, 1029, 1058, 1211
Hpy188III	TCNNGA	6 cut(s)	49, 161, 206, 488, 570, 1016
Hpy8I	GTNNAC	3 cut(s)	30, 151, 1182
Hpy99I	CGWCG	1 cut(s)	114
HpyAV	CCTTC	3 cut(s)	757, 802, 926
HpyCH4III	ACNGT	3 cut(s)	410, 546, 1354
HpyCH4IV	ACGT	1 cut(s)	900
HpyCH4V	TGCA	7 cut(s)	142, 227, 278, 389, 758, 1087, 1222
HpyF3I	CTNAG	5 cut(s)	69, 266, 306, 1185, 1208
HpySE526I	ACGT	1 cut(s)	900
Hsp92I	GRCGYC	1 cut(s)	45
Hsp92II	CATG	7 cut(s)	14, 389, 462, 587, 820, 1222, 1226
HspAI	GCGC	3 cut(s)	415, 554, 1118
KflI	GGGWCCC	1 cut(s)	916
Kzo9I	GATC	2 cut(s)	367, 811
LmnI	GCTCC	2 cut(s)	962, 1069
Lsp1109I	GCAGC	1 cut(s)	463
LweI	GCATC	3 cut(s)	236, 859, 993
MaeI	CTAG	2 cut(s)	1322, 1417
MaeII	ACGT	1 cut(s)	900
MaeIII	GTNAC	2 cut(s)	683, 700
MalI	GATC	2 cut(s)	369, 813
MboI	GATC	2 cut(s)	367, 811
MboII	GAAGA	6 cut(s)	474, 620, 639, 1112, 1172, 1358
MhlI	GDGCHC	3 cut(s)	118, 267, 954
MluCI	AATT	9 cut(s)	133, 501, 505, 862, 882, 1069, 1145, 1331, 1347
MlyI	GAGTC	1 cut(s)	1013
MmeI	TCCRAC	2 cut(s)	652, 727
Mph1103I	ATGCAT	1 cut(s)	1224
MseI	TTAA	7 cut(s)	504, 527, 663, 737, 843, 861, 881
MslI	CAYNNNNRTG	1 cut(s)	819
MspA1I	CMGCKG	1 cut(s)	959
MspR9I	CCNGG	3 cut(s)	91, 695, 990
Mva1269I	GAATGC	1 cut(s)	417
MvaI	CCWGG	3 cut(s)	91, 695, 990
NcoI	CCATGG	1 cut(s)	10
NdeII	GATC	2 cut(s)	367, 811
NlaIII	CATG	7 cut(s)	14, 389, 462, 587, 820, 1222, 1226
NlaIV	GGNNCC	2 cut(s)	917, 918
NmuCI	GTSAC	2 cut(s)	683, 700
NsbI	TGCGCA	2 cut(s)	416, 1119
NsiI	ATGCAT	1 cut(s)	1224
NspI	RCATGY	3 cut(s)	389, 820, 1222
NspV	TTCGAA	1 cut(s)	174
PciI	ACATGT	1 cut(s)	816
PctI	GAATGC	1 cut(s)	417
PfeI	GAWTC	4 cut(s)	157, 302, 1201, 1402
PkrI	GCNGC	1 cut(s)	478
Ple19I	CGATCG	1 cut(s)	370
PleI	GAGTC	1 cut(s)	1013
PpsI	GAGTC	1 cut(s)	1013
PpuMI	RGGWCCY	2 cut(s)	163, 916
PscI	ACATGT	1 cut(s)	816
PshAI	GACNNNNGTC	1 cut(s)	1023
PshBI	ATTAAT	2 cut(s)	504, 663
PsiI	TTATAA	1 cut(s)	1143
Psp124BI	GAGCTC	1 cut(s)	267
Psp5II	RGGWCCY	2 cut(s)	163, 916
Psp6I	CCWGG	3 cut(s)	89, 693, 988
PspGI	CCWGG	3 cut(s)	89, 693, 988
PspN4I	GGNNCC	2 cut(s)	917, 918
PspPI	GGNCC	4 cut(s)	163, 674, 916, 1058
PspPPI	RGGWCCY	2 cut(s)	163, 916
PvuI	CGATCG	1 cut(s)	370
PvuII	CAGCTG	1 cut(s)	959
RsaI	GTAC	3 cut(s)	56, 982, 1413
RsaNI	GTAC	3 cut(s)	55, 981, 1412
RseI	CAYNNNNRTG	1 cut(s)	819
SacI	GAGCTC	1 cut(s)	267
SalI	GTCGAC	1 cut(s)	28
SaqAI	TTAA	7 cut(s)	504, 527, 663, 737, 843, 861, 881
SatI	GCNGC	1 cut(s)	477
Sau3AI	GATC	2 cut(s)	367, 811
Sau96I	GGNCC	4 cut(s)	163, 674, 916, 1058
SchI	GAGTC	1 cut(s)	1013
ScrFI	CCNGG	3 cut(s)	91, 695, 990
SduI	GDGCHC	3 cut(s)	118, 267, 954
SfaNI	GCATC	3 cut(s)	236, 859, 993
SfuI	TTCGAA	1 cut(s)	174
SinI	GGWCC	4 cut(s)	163, 674, 916, 1058
SmiMI	CAYNNNNRTG	1 cut(s)	819
SmlI	CTYRAG	4 cut(s)	23, 281, 634, 1166
SmoI	CTYRAG	4 cut(s)	23, 281, 634, 1166
Sse9I	AATT	9 cut(s)	133, 501, 505, 862, 882, 1069, 1145, 1331, 1347
SsiI	CCGC	3 cut(s)	121, 169, 242
SspI	AATATT	1 cut(s)	1375
SspMI	CTAG	2 cut(s)	1322, 1417
SstI	GAGCTC	1 cut(s)	267
StyD4I	CCNGG	3 cut(s)	89, 693, 988
StyI	CCWWGG	1 cut(s)	10
TaaI	ACNGT	3 cut(s)	410, 546, 1354
TaiI	ACGT	1 cut(s)	903
TaqI	TCGA	4 cut(s)	29, 112, 174, 571
TasI	AATT	9 cut(s)	133, 501, 505, 862, 882, 1069, 1145, 1331, 1347
TatI	WGTACW	3 cut(s)	54, 980, 1411
TfiI	GAWTC	4 cut(s)	157, 302, 1201, 1402
Tru1I	TTAA	7 cut(s)	504, 527, 663, 737, 843, 861, 881
Tru9I	TTAA	7 cut(s)	504, 527, 663, 737, 843, 861, 881
TscAI	CASTG	3 cut(s)	760, 895, 1000
TseFI	GTSAC	2 cut(s)	683, 700
TseI	GCWGC	1 cut(s)	476
Tsp45I	GTSAC	2 cut(s)	683, 700
TspDTI	ATGAA	5 cut(s)	572, 656, 735, 777, 1033
TspRI	CASTG	3 cut(s)	760, 895, 1000
VpaK11BI	GGWCC	4 cut(s)	163, 674, 916, 1058
VspI	ATTAAT	2 cut(s)	504, 663
XagI	CCTNNNNNAGG	1 cut(s)	924
XapI	RAATTY	2 cut(s)	1145, 1331
XceI	RCATGY	3 cut(s)	389, 820, 1222
XmiI	GTMKAC	1 cut(s)	29
XspI	CTAG	2 cut(s)	1322, 1417
Zsp2I	ATGCAT	1 cut(s)	1224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.