Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003533

Physical Location & Seq

Genomic Coordinates Forward (+)

7732091 .. 7750522

Gene Structure 18432 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0056900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2379 bp

ATGAAGAACCAAGTACTTCTCTTGCATCTTTCACTTTCAGTATTTCTCCTAATAGTTCCCATTGTAGCTCAACAATTTGCATGTGACACCAAAGCTTCCACAACTAGCCAATTTCCTTTTTGCAACACTTCTCTGCCTTATGAGGACCGGGCCAAGGACTTGGTCTCGCGCCTCACTCTCCAAGAAAAGGTCCAACAACTAGTGGATGCCTCCACAGGCATTTCTCGGCTAGGCGTGCCTAAATATGAGTGGTGGTCCGAGGCACTCCATGGTGTTTCGAACGTTGGCCCAGGCACTCGCTTTAATGCCACGGTGCCTGGTGCTACTAGTTTCCCAGCAGTGATTCTATCCGCAGCGAGTTTTAATGAATCACTATGGTTGAGGATGGGGCAAGTTGTGTCAACCGAGGCTCGAGCCATGTACAATTTGGGTCTAGCCGGGTTGACATTTTGGAGTCCTAATGTCAATGTGGTCCGTGACCCGAGATGGGGTCGAACGCAAGAGACACCGGGGGAGGACCCCTTAGTGGTGTCAAATTATGCAGTGAACTATGTCAAGGGTCTCCAAGACGTTGGTGAGGGCAATGCCACTGGTGATAGGCTCAAGGTCTCAAGTTGCTGCAAGCATTACACTGCTTATGATATTGATAATTGGAAAGGTGTTGATAGATTTCACTTTGATGCTCAGGTGACAAAACAGGACATGGAGGATACATTCCAGCCACCATTCAAAAGTTGTGTGCAGGAGGGCCATGTTAGCAGTGTCATGTGTTCATATAATAGGGTGAATGGGATTCCCACCTGTGCTGACCCAGACCTGCTTCAAGGGGTAGTCAGAGGCCAATGGGGTCTAGATGGATATATAGTTTCTGACTGTGATTCTGTGGAAGTTTATTACGATGCAATCCATTATACTGAAACACATGAGGATGCAGCAGCCCTGGCCTTGAAAGCAGGTCTAAACATGAACTGTGGGGATTATCTAGGGAAGTACACAGAGAATGCAGTCAACTTGAAGAAAGTGGAAGAATCTGTTGTTGATCAGTCCTTGATATACAACTACATAGTCCTCATGAGGCTTGGCTTCTTTGACGGTGATCCGAAACTGCTCGAATTCGGAAACCTTGGGGTATCGGATGTTTGCAGTGACGAACATAAAGCGTTGGCACTTGACGCTGCTAAGCAGGGCATAGTTTTGCTAGATAACAATGGAGCTCTTCCTTTGTCCCCTACTACGACCAAGAATTTGGCCATTATTGGACCTAATGCAAATGCCACTAAGGTTATGATAAGCAACTATGCTGGAATACCATGTAGCTATACTAGTCCTCTACAAGGGCTACAAAAGTATGTGTCGACAGCAAAATATGAGCCCGGGTGTAGCAGTGTAAAATGTGCTGATGAAAGCCTCATCGGGGCCGCGGTTCAGGCTGCTGCCACAGCTGATGCAGTGGTGTTAGTAGTGGGGCTTGATCAGTCCATTGAAGCAGAAGGTCTAGACAGAGAGAACTTGACTCTACCAGGATTTCAGGAAAAGCTTGTGGAGCAAGTTGTTGATGCAACAAATGGAACAGTCATTCTGGTCATTATGTCAGCTGGTCCAATTGATGTTTCGTTTGCTAAAAATTTGAGCAAAGTAGGAGGGATTCTATGGGTTGGGTATCCAGGTCAAGAGGGAGGAGATGCCATAGCTCAAGTCATATTTGGGGACTATAATCCAGCTGGGAAGAGTCCTTTTACATGGTACCCACAGGAGTATGTAGACCAGGTGCCAATGACAGACATGAACATGAGGGCCAACACTAGTAGAAACTATCCTGGAAGAACATATAGGTTCTACACCGGAAAAACCGTCTATGAGTTTGGTCACGGGCTCAGCTATTCAACGTTTTCTAAGTTCATAATCTATGCGCCTTCCACCCTACTCATCCAGCCAAACTCCACTATTACTTTCAACCCACACAATAACATTCAATTGGAACCCATCTCTGGCACTACCCAAGAAATTGACATATCAAGCATAGATTGCCAGAGCTCAGCATTTGATCTAGTTGTTGGGGTGAGGAACAAAGGGCCAATGGATGGCTCCCACGTGGTGCTCGCTTTTTGGAAACCACCACGCTCGCAAGGGTTGATTGGGGCACCAAAGTTGCAGCTTGTGGGTTTTGAAAGAGTGGAGGTGAAGAATAGAGAGACAAAGTCATTGAGAATGAGGGTGGATGTGTGCAAGGGACTGAACCTTGTGGATAATGAAGGGAAGAGGAAGTTGGTCACCGGGCTGCACACCATTCTCGTGGGCTCTCCTAGTGAGAAACAAGTGAATCACTACCTCAGTGTTAGGCTTGCTCCGAAATATGAACTGAAGTCACTACTAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0030312 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042221 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribos_L4_asso_C Ribosomal_L4

Protein Analysis

792

Amino Acids

86.49

Weight (kDa)

5.41

Isoelectric Point (pI)

32.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_3	PF00933	107 - 349	3.9e-34	Glycosyl hydrolase family 3 N terminal domain
Glyco_hydro_3_C	PF01915	397 - 627	1.2e-52	Glycosyl hydrolase family 3 C-terminal domain
Fn3-like	PF14310	697 - 767	1.2e-09	Fibronectin type III-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0003533)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09630 AT3G09630 AT5G02870 AT5G02870
fragaria_vesca	FvH4_4g07470 FvH4_6g15170 FvH4_6g15170 FvH4_6g15170
malus_domestica	MD12G1126000.v1.1 MD16G1251600.v1.1
prunus_persica	Prupe.1G078100_v2.0.a1 Prupe.1G078100_v2.0.a1 Prupe.6G242600_v2.0.a1
pyrus_communis	pycom04g10060 pycom12g12420 pycom16g21150
rosa_chinensis	RchiOBHm_Chr3g0468471 RchiOBHm_Chr6g0270851
rosa_laevigata	RLG00000013765 RLG00000024426
rosa_multiflora	Rmu_sc0000642.1_g000029 Rmu_sc0008735.1_g000002 Rmu_sc0008735.1_g000003
rosa_roxburghii	Rroxscaffold_6G00412730 Rroxscaffold_7G00197580
rosa_rugosa	Rorug03G0095700 Rorug06G0056900
rosa_samantha	Rh3AG143500 Rh3BG166000 Rh6AG176200 Rh6BG179400 Rh6CG175600 Rh6DG167900
rosa_wichuraiana	Rw3G013590 Rw6G015010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	825, 944
Acc65I	GGTACC	1 cut(s)	1743
AccB1I	GGYRCC	4 cut(s)	313, 1743, 1768, 2140
AccB7I	CCANNNNNTGG	1 cut(s)	2081
AccI	GTMKAC	2 cut(s)	1355, 1761
AccII	CGCG	2 cut(s)	169, 1421
AciI	CCGC	3 cut(s)	351, 1419, 1421
AclI	AACGTT	2 cut(s)	282, 1886
AclWI	GGATC	1 cut(s)	1091
AcoI	YGGCCR	1 cut(s)	1248
AcsI	RAATTY	3 cut(s)	1112, 1243, 1624
AcvI	CACGTG	1 cut(s)	2092
AdeI	CACNNNGTG	1 cut(s)	2095
AfaI	GTAC	4 cut(s)	15, 422, 992, 1745
AfiI	CCNNNNNNNGG	9 cut(s)	154, 187, 487, 488, 526, 1334, 1414, 1988, 2081
AgsI	TTSAA	9 cut(s)	730, 824, 949, 1015, 1484, 1884, 1954, 1973, 2168
AhlI	ACTAGT	4 cut(s)	199, 326, 1322, 1802
AjnI	CCWGG	7 cut(s)	289, 316, 939, 1519, 1663, 1764, 1816
AjuI	GAANNNNNNNTTGG	4 cut(s)	1594, 1626, 2249, 2281
Alw21I	GWGCWC	3 cut(s)	1216, 2036, 2100
Alw26I	GTCTC	5 cut(s)	169, 497, 566, 613, 2186
AlwI	GGATC	1 cut(s)	1091
Ama87I	CYCGRG	3 cut(s)	411, 481, 1373
AoxI	GGCC	9 cut(s)	150, 286, 748, 838, 942, 1248, 1416, 1794, 2072
ApeKI	GCWGC	9 cut(s)	353, 618, 932, 935, 1175, 1430, 1433, 2152, 2278
ApoI	RAATTY	3 cut(s)	1112, 1243, 1624
ArsI	GACNNNNNNTTYG	2 cut(s)	1228, 1260
Asp718I	GGTACC	1 cut(s)	1743
AspLEI	GCGC	2 cut(s)	171, 1912
AsuC2I	CCSGG	6 cut(s)	149, 439, 510, 1374, 1375, 2275
AsuHPI	GGTGA	8 cut(s)	587, 605, 700, 796, 1106, 2071, 2191, 2263
AsuII	TTCGAA	1 cut(s)	278
AvaI	CYCGRG	3 cut(s)	411, 481, 1373
AvaII	GGWCC	7 cut(s)	145, 190, 255, 472, 517, 1259, 1598
BaeGI	GKGCMC	1 cut(s)	2143
BalI	TGGCCA	1 cut(s)	1250
BanI	GGYRCC	4 cut(s)	313, 1743, 1768, 2140
BanII	GRGCYC	5 cut(s)	1216, 1374, 1875, 2036, 2300
BauI	CACGAG	1 cut(s)	2291
BbrPI	CACGTG	1 cut(s)	2092
Bbv12I	GWGCWC	3 cut(s)	1216, 2036, 2100
BbvI	GCAGC	9 cut(s)	365, 605, 944, 947, 1162, 1417, 1420, 2164, 2265
BccI	CCATC	5 cut(s)	379, 480, 848, 1991, 2075
BciT130I	CCWGG	7 cut(s)	291, 318, 941, 1521, 1665, 1766, 1818
BciVI	GTATCC	2 cut(s)	703, 1671
BclI	TGATCA	2 cut(s)	1039, 1471
BcnI	CCSGG	6 cut(s)	149, 439, 510, 1374, 1375, 2275
BcoDI	GTCTC	5 cut(s)	169, 497, 566, 613, 2186
BcuI	ACTAGT	4 cut(s)	199, 326, 1322, 1802
BfuAI	ACCTGC	2 cut(s)	825, 944
BfuI	GTATCC	2 cut(s)	703, 1671
BlpI	GCTNAGC	3 cut(s)	1179, 1874, 2035
BmcAI	AGTACT	1 cut(s)	15
Bme18I	GGWCC	7 cut(s)	145, 190, 255, 472, 517, 1259, 1598
BmeT110I	CYCGRG	3 cut(s)	411, 481, 1373
BmiI	GGNNCC	8 cut(s)	315, 519, 1417, 1745, 1770, 1980, 2086, 2142
BmsI	GCATC	8 cut(s)	34, 196, 670, 889, 919, 1435, 1546, 1672
Bpu10I	CCTNAGC	1 cut(s)	684
Bpu1102I	GCTNAGC	3 cut(s)	1179, 1874, 2035
Bpu14I	TTCGAA	1 cut(s)	278
BpuEI	CTTGAG	3 cut(s)	587, 595, 1677
BpuMI	CCSGG	6 cut(s)	149, 439, 510, 1374, 1375, 2275
BsaAI	YACGTR	1 cut(s)	2092
BsaI	GGTCTC	3 cut(s)	169, 566, 613
BsaWI	WCCGGW	1 cut(s)	1841
Bsc4I	CCNNNNNNNGG	9 cut(s)	154, 187, 487, 488, 526, 1334, 1414, 1988, 2081
Bse1I	ACTGG	1 cut(s)	595
Bse3DI	GCAATG	1 cut(s)	589
BseBI	CCWGG	7 cut(s)	291, 318, 941, 1521, 1665, 1766, 1818
BseGI	GGATG	7 cut(s)	211, 390, 934, 1141, 1926, 2086, 2224
BseLI	CCNNNNNNNGG	9 cut(s)	154, 187, 487, 488, 526, 1334, 1414, 1988, 2081
BseMI	GCAATG	1 cut(s)	589
BseMII	CTCAG	4 cut(s)	698, 1888, 2049, 2344
BseNI	ACTGG	1 cut(s)	595
BseRI	GAGGAG	1 cut(s)	1692
BseSI	GKGCMC	1 cut(s)	2143
BseXI	GCAGC	9 cut(s)	365, 605, 944, 947, 1162, 1417, 1420, 2164, 2265
BseYI	CCCAGC	2 cut(s)	334, 1721
BsgI	GTGCAG	2 cut(s)	761, 2264
Bsh1236I	CGCG	2 cut(s)	169, 1421
BshFI	GGCC	9 cut(s)	152, 288, 750, 840, 944, 1250, 1418, 1796, 2074
BshNI	GGYRCC	4 cut(s)	313, 1743, 1768, 2140
BsiHKAI	GWGCWC	3 cut(s)	1216, 2036, 2100
BsiHKCI	CYCGRG	3 cut(s)	411, 481, 1373
BsiSI	CCGG	6 cut(s)	148, 438, 509, 1374, 1842, 2274
BslFI	GGGAC	3 cut(s)	1210, 1721, 2244
BslI	CCNNNNNNNGG	9 cut(s)	154, 187, 487, 488, 526, 1334, 1414, 1988, 2081
BsmAI	GTCTC	5 cut(s)	169, 497, 566, 613, 2186
BsmFI	GGGAC	3 cut(s)	1210, 1721, 2244
BsmI	GAATGC	1 cut(s)	1006
BsnI	GGCC	9 cut(s)	152, 288, 750, 840, 944, 1250, 1418, 1796, 2074
Bso31I	GGTCTC	3 cut(s)	169, 566, 613
BsoBI	CYCGRG	3 cut(s)	411, 481, 1373
Bsp119I	TTCGAA	1 cut(s)	278
Bsp1286I	GDGCHC	7 cut(s)	1216, 1374, 1875, 2036, 2100, 2143, 2300
Bsp1407I	TGTACA	1 cut(s)	420
Bsp143I	GATC	4 cut(s)	1039, 1096, 1471, 2044
Bsp1720I	GCTNAGC	3 cut(s)	1179, 1874, 2035
Bsp19I	CCATGG	1 cut(s)	268
BspACI	CCGC	3 cut(s)	351, 1419, 1421
BspANI	GGCC	9 cut(s)	152, 288, 750, 840, 944, 1250, 1418, 1796, 2074
BspCNI	CTCAG	4 cut(s)	697, 1887, 2048, 2343
BspFNI	CGCG	2 cut(s)	169, 1421
BspHI	TCATGA	1 cut(s)	1071
BspLI	GGNNCC	8 cut(s)	315, 519, 1417, 1745, 1770, 1980, 2086, 2142
BspMI	ACCTGC	2 cut(s)	825, 944
BspPI	GGATC	1 cut(s)	1091
BspQI	GCTCTTC	1 cut(s)	1221
BspT104I	TTCGAA	1 cut(s)	278
BspT107I	GGYRCC	4 cut(s)	313, 1743, 1768, 2140
BspTNI	GGTCTC	3 cut(s)	169, 566, 613
BsrDI	GCAATG	1 cut(s)	589
BsrGI	TGTACA	1 cut(s)	420
BsrI	ACTGG	1 cut(s)	595
BssMI	GATC	4 cut(s)	1039, 1096, 1471, 2044
BssSI	CACGAG	1 cut(s)	2291
BssT1I	CCWWGG	3 cut(s)	153, 268, 1123
Bst2BI	CACGAG	1 cut(s)	2291
Bst2UI	CCWGG	7 cut(s)	291, 318, 941, 1521, 1665, 1766, 1818
Bst4CI	ACNGT	6 cut(s)	313, 875, 971, 1094, 1573, 1852
Bst6I	CTCTTC	3 cut(s)	1221, 1721, 2252
BstAPI	GCANNNNNTGC	1 cut(s)	2025
BstAUI	TGTACA	1 cut(s)	420
BstBAI	YACGTR	1 cut(s)	2092
BstBI	TTCGAA	1 cut(s)	278
BstC8I	GCNNGC	5 cut(s)	236, 623, 2100, 2123, 2343
BstDEI	CTNAG	8 cut(s)	523, 684, 1179, 1278, 1874, 1893, 2035, 2330
BstDSI	CCRYGG	3 cut(s)	268, 309, 1419
BstEII	GGTNACC	1 cut(s)	2269
BstENI	CCTNNNNNAGG	1 cut(s)	1332
BstF5I	GGATG	7 cut(s)	211, 390, 934, 1141, 1926, 2086, 2224
BstFNI	CGCG	2 cut(s)	169, 1421
BstHHI	GCGC	2 cut(s)	171, 1912
BstKTI	GATC	4 cut(s)	1042, 1099, 1474, 2047
BstMAI	GTCTC	5 cut(s)	169, 497, 566, 613, 2186
BstMBI	GATC	4 cut(s)	1039, 1096, 1471, 2044
BstMWI	GCNNNNNNNGC	9 cut(s)	235, 756, 941, 950, 1172, 1427, 1439, 1543, 2025
BstNI	CCWGG	7 cut(s)	291, 318, 941, 1521, 1665, 1766, 1818
BstNSI	RCATGY	1 cut(s)	84
BstPI	GGTNACC	1 cut(s)	2269
BstSLI	GKGCMC	1 cut(s)	2143
BstUI	CGCG	2 cut(s)	169, 1421
BstV1I	GCAGC	9 cut(s)	365, 605, 944, 947, 1162, 1417, 1420, 2164, 2265
BstXI	CCANNNNNNTGG	4 cut(s)	160, 572, 1246, 2293
BsuI	GTATCC	2 cut(s)	703, 1671
BsuRI	GGCC	9 cut(s)	152, 288, 750, 840, 944, 1250, 1418, 1796, 2074
BtgI	CCRYGG	3 cut(s)	268, 309, 1419
BtsCI	GGATG	7 cut(s)	211, 390, 934, 1141, 1926, 2086, 2224
BtsI	GCAGTG	7 cut(s)	345, 549, 630, 766, 1150, 1390, 1455
BtsIMutI	CAGTG	9 cut(s)	345, 549, 588, 630, 766, 1150, 1390, 1455, 2338
BveI	ACCTGC	2 cut(s)	825, 944
Cac8I	GCNNGC	5 cut(s)	236, 623, 2100, 2123, 2343
CciI	TCATGA	1 cut(s)	1071
CfoI	GCGC	2 cut(s)	171, 1912
Cfr42I	CCGCGG	1 cut(s)	1422
Cfr9I	CCCGGG	1 cut(s)	1373
CseI	GACGC	1 cut(s)	1181
CsiI	ACCWGGT	1 cut(s)	1764
Csp6I	GTAC	4 cut(s)	14, 421, 991, 1744
CviQI	GTAC	4 cut(s)	14, 421, 991, 1744
DdeI	CTNAG	8 cut(s)	523, 684, 1179, 1278, 1874, 1893, 2035, 2330
DpnI	GATC	4 cut(s)	1041, 1098, 1473, 2046
DpnII	GATC	4 cut(s)	1039, 1096, 1471, 2044
DraIII	CACNNNGTG	1 cut(s)	2095
EaeI	YGGCCR	1 cut(s)	1248
Eam1104I	CTCTTC	3 cut(s)	1221, 1721, 2252
EarI	CTCTTC	3 cut(s)	1221, 1721, 2252
Ecl136II	GAGCTC	2 cut(s)	1214, 2034
Eco130I	CCWWGG	3 cut(s)	153, 268, 1123
Eco24I	GRGCYC	5 cut(s)	1216, 1374, 1875, 2036, 2300
Eco31I	GGTCTC	3 cut(s)	169, 566, 613
Eco47I	GGWCC	7 cut(s)	145, 190, 255, 472, 517, 1259, 1598
Eco53kI	GAGCTC	2 cut(s)	1214, 2034
Eco72I	CACGTG	1 cut(s)	2092
Eco88I	CYCGRG	3 cut(s)	411, 481, 1373
Eco91I	GGTNACC	1 cut(s)	2269
EcoICRI	GAGCTC	2 cut(s)	1214, 2034
EcoNI	CCTNNNNNAGG	1 cut(s)	1332
EcoO109I	RGGNCCY	1 cut(s)	517
EcoO65I	GGTNACC	1 cut(s)	2269
EcoRI	GAATTC	1 cut(s)	1112
EcoRII	CCWGG	7 cut(s)	289, 316, 939, 1519, 1663, 1764, 1816
EcoT14I	CCWWGG	3 cut(s)	153, 268, 1123
EcoT38I	GRGCYC	5 cut(s)	1216, 1374, 1875, 2036, 2300
ErhI	CCWWGG	3 cut(s)	153, 268, 1123
FaqI	GGGAC	3 cut(s)	1210, 1721, 2244
FbaI	TGATCA	2 cut(s)	1039, 1471
FblI	GTMKAC	2 cut(s)	1355, 1761
FokI	GGATG	7 cut(s)	218, 397, 941, 1148, 1913, 2093, 2231
FriOI	GRGCYC	5 cut(s)	1216, 1374, 1875, 2036, 2300
GlaI	GCGC	2 cut(s)	170, 1911
GsaI	CCCAGC	2 cut(s)	338, 1725
HaeIII	GGCC	9 cut(s)	152, 288, 750, 840, 944, 1250, 1418, 1796, 2074
HapII	CCGG	6 cut(s)	148, 438, 509, 1374, 1842, 2274
HgaI	GACGC	1 cut(s)	1181
HhaI	GCGC	2 cut(s)	171, 1912
Hin6I	GCGC	2 cut(s)	169, 1910
HinP1I	GCGC	2 cut(s)	169, 1910
HincII	GTYRAC	4 cut(s)	402, 444, 1009, 1356
HindII	GTYRAC	4 cut(s)	402, 444, 1009, 1356
HindIII	AAGCTT	2 cut(s)	93, 1535
HpaII	CCGG	6 cut(s)	148, 438, 509, 1374, 1842, 2274
HphI	GGTGA	8 cut(s)	587, 605, 700, 796, 1106, 2071, 2191, 2263
Hpy166II	GTNNAC	7 cut(s)	402, 444, 547, 993, 1009, 1356, 1762
Hpy188I	TCNGA	7 cut(s)	259, 836, 871, 1101, 1118, 1135, 2349
Hpy188III	TCNNGA	5 cut(s)	851, 1072, 1496, 1529, 1670
Hpy8I	GTNNAC	7 cut(s)	402, 444, 547, 993, 1009, 1356, 1762
HpyAV	CCTTC	3 cut(s)	1484, 1923, 2246
HpyCH4III	ACNGT	6 cut(s)	313, 875, 971, 1094, 1573, 1852
HpyCH4IV	ACGT	4 cut(s)	282, 570, 1886, 2091
HpyF10VI	GCNNNNNNNGC	9 cut(s)	235, 756, 941, 950, 1172, 1427, 1439, 1543, 2025
HpyF3I	CTNAG	8 cut(s)	523, 684, 1179, 1278, 1874, 1893, 2035, 2330
HpySE526I	ACGT	4 cut(s)	282, 570, 1886, 2091
HspAI	GCGC	2 cut(s)	169, 1910
KpnI	GGTACC	1 cut(s)	1747
Ksp22I	TGATCA	2 cut(s)	1039, 1471
KspI	CCGCGG	1 cut(s)	1422
Kzo9I	GATC	4 cut(s)	1039, 1096, 1471, 2044
LguI	GCTCTTC	1 cut(s)	1221
LmnI	GCTCC	4 cut(s)	1211, 1543, 2090, 2350
Lsp1109I	GCAGC	9 cut(s)	365, 605, 944, 947, 1162, 1417, 1420, 2164, 2265
LweI	GCATC	8 cut(s)	34, 196, 670, 889, 919, 1435, 1546, 1672
MabI	ACCWGGT	1 cut(s)	1764
MaeII	ACGT	4 cut(s)	282, 570, 1886, 2091
MaeIII	GTNAC	7 cut(s)	83, 476, 688, 1145, 1865, 2269, 2364
MalI	GATC	4 cut(s)	1041, 1098, 1473, 2046
MboI	GATC	4 cut(s)	1039, 1096, 1471, 2044
MboII	GAAGA	8 cut(s)	16, 1027, 1037, 1208, 1738, 1833, 2194, 2269
MfeI	CAATTG	2 cut(s)	1602, 1973
MhlI	GDGCHC	7 cut(s)	1216, 1374, 1875, 2036, 2100, 2143, 2300
MlsI	TGGCCA	1 cut(s)	1250
MluNI	TGGCCA	1 cut(s)	1250
MlyI	GAGTC	3 cut(s)	463, 1507, 1738
MmeI	TCCRAC	1 cut(s)	217
Mox20I	TGGCCA	1 cut(s)	1250
MscI	TGGCCA	1 cut(s)	1250
MseI	TTAA	2 cut(s)	303, 363
MslI	CAYNNNNRTG	4 cut(s)	678, 927, 1787, 2291
Msp20I	TGGCCA	1 cut(s)	1250
MspA1I	CMGCKG	4 cut(s)	1421, 1442, 1595, 1721
MspI	CCGG	6 cut(s)	148, 438, 509, 1374, 1842, 2274
MunI	CAATTG	2 cut(s)	1602, 1973
Mva1269I	GAATGC	1 cut(s)	1006
MvaI	CCWGG	7 cut(s)	291, 318, 941, 1521, 1665, 1766, 1818
MvnI	CGCG	2 cut(s)	169, 1421
MwoI	GCNNNNNNNGC	9 cut(s)	235, 756, 941, 950, 1172, 1427, 1439, 1543, 2025
NciI	CCSGG	6 cut(s)	149, 439, 510, 1374, 1375, 2275
NcoI	CCATGG	1 cut(s)	268
NdeII	GATC	4 cut(s)	1039, 1096, 1471, 2044
NlaIV	GGNNCC	8 cut(s)	315, 519, 1417, 1745, 1770, 1980, 2086, 2142
NmeAIII	GCCGAG	1 cut(s)	205
NmuCI	GTSAC	7 cut(s)	83, 476, 688, 1145, 1865, 2269, 2364
NspI	RCATGY	1 cut(s)	84
NspV	TTCGAA	1 cut(s)	278
PaeR7I	CTCGAG	1 cut(s)	411
PagI	TCATGA	1 cut(s)	1071
PciSI	GCTCTTC	1 cut(s)	1221
PctI	GAATGC	1 cut(s)	1006
PfeI	GAWTC	7 cut(s)	343, 368, 793, 878, 1028, 1645, 2320
PflFI	GACNNNGTC	2 cut(s)	161, 2197
PflMI	CCANNNNNTGG	1 cut(s)	2081
PfoI	TCCNGGA	1 cut(s)	1816
PleI	GAGTC	3 cut(s)	462, 1507, 1737
PmaCI	CACGTG	1 cut(s)	2092
PmlI	CACGTG	1 cut(s)	2092
PpsI	GAGTC	3 cut(s)	462, 1507, 1737
Ppu21I	YACGTR	1 cut(s)	2092
PpuMI	RGGWCCY	1 cut(s)	517
Psp124BI	GAGCTC	2 cut(s)	1216, 2036
Psp1406I	AACGTT	2 cut(s)	282, 1886
Psp5II	RGGWCCY	1 cut(s)	517
Psp6I	CCWGG	7 cut(s)	289, 316, 939, 1519, 1663, 1764, 1816
PspCI	CACGTG	1 cut(s)	2092
PspEI	GGTNACC	1 cut(s)	2269
PspFI	CCCAGC	2 cut(s)	334, 1721
PspGI	CCWGG	7 cut(s)	289, 316, 939, 1519, 1663, 1764, 1816
PspN4I	GGNNCC	8 cut(s)	315, 519, 1417, 1745, 1770, 1980, 2086, 2142
PspPPI	RGGWCCY	1 cut(s)	517
PspXI	VCTCGAGB	1 cut(s)	411
PsyI	GACNNNGTC	2 cut(s)	161, 2197
PvuII	CAGCTG	3 cut(s)	1442, 1595, 1721
RsaI	GTAC	4 cut(s)	15, 422, 992, 1745
RsaNI	GTAC	4 cut(s)	14, 421, 991, 1744
RseI	CAYNNNNRTG	4 cut(s)	678, 927, 1787, 2291
SacI	GAGCTC	2 cut(s)	1216, 2036
SacII	CCGCGG	1 cut(s)	1422
SalI	GTCGAC	1 cut(s)	1354
SapI	GCTCTTC	1 cut(s)	1221
SaqAI	TTAA	2 cut(s)	303, 363
Sau3AI	GATC	4 cut(s)	1039, 1096, 1471, 2044
ScaI	AGTACT	1 cut(s)	15
SchI	GAGTC	3 cut(s)	463, 1507, 1738
SduI	GDGCHC	7 cut(s)	1216, 1374, 1875, 2036, 2100, 2143, 2300
SexAI	ACCWGGT	1 cut(s)	1764
SfaNI	GCATC	8 cut(s)	34, 196, 670, 889, 919, 1435, 1546, 1672
Sfr274I	CTCGAG	1 cut(s)	411
Sfr303I	CCGCGG	1 cut(s)	1422
SfuI	TTCGAA	1 cut(s)	278
SgrBI	CCGCGG	1 cut(s)	1422
SinI	GGWCC	7 cut(s)	145, 190, 255, 472, 517, 1259, 1598
SlaI	CTCGAG	1 cut(s)	411
SmaI	CCCGGG	1 cut(s)	1375
SmiMI	CAYNNNNRTG	4 cut(s)	678, 927, 1787, 2291
SmlI	CTYRAG	4 cut(s)	411, 602, 610, 1692
SmoI	CTYRAG	4 cut(s)	411, 602, 610, 1692
SpeI	ACTAGT	4 cut(s)	199, 326, 1322, 1802
SsiI	CCGC	3 cut(s)	351, 1419, 1421
SstI	GAGCTC	2 cut(s)	1216, 2036
StyI	CCWWGG	3 cut(s)	153, 268, 1123
TaaI	ACNGT	6 cut(s)	313, 875, 971, 1094, 1573, 1852
TaiI	ACGT	4 cut(s)	285, 573, 1889, 2094
TaqI	TCGA	5 cut(s)	278, 412, 493, 1110, 1355
TatI	WGTACW	3 cut(s)	13, 420, 990
TauI	GCSGC	1 cut(s)	1421
TfiI	GAWTC	7 cut(s)	343, 368, 793, 878, 1028, 1645, 2320
Tru1I	TTAA	2 cut(s)	303, 363
Tru9I	TTAA	2 cut(s)	303, 363
TscAI	CASTG	9 cut(s)	345, 549, 595, 637, 766, 1150, 1390, 1455, 2338
TseFI	GTSAC	7 cut(s)	83, 476, 688, 1145, 1865, 2269, 2364
TseI	GCWGC	9 cut(s)	353, 618, 932, 935, 1175, 1430, 1433, 2152, 2278
Tsp45I	GTSAC	7 cut(s)	83, 476, 688, 1145, 1865, 2269, 2364
TspDTI	ATGAA	9 cut(s)	17, 381, 762, 980, 1416, 1799, 1888, 2265, 2370
TspGWI	ACGGA	1 cut(s)	464
TspMI	CCCGGG	1 cut(s)	1373
TspRI	CASTG	9 cut(s)	345, 549, 595, 637, 766, 1150, 1390, 1455, 2338
Tth111I	GACNNNGTC	2 cut(s)	161, 2197
Van91I	CCANNNNNTGG	1 cut(s)	2081
VpaK11BI	GGWCC	7 cut(s)	145, 190, 255, 472, 517, 1259, 1598
XagI	CCTNNNNNAGG	1 cut(s)	1332
XapI	RAATTY	3 cut(s)	1112, 1243, 1624
XbaI	TCTAGA	2 cut(s)	850, 1495
XceI	RCATGY	1 cut(s)	84
XcmI	CCANNNNNNNNNTGG	1 cut(s)	424
XhoI	CTCGAG	1 cut(s)	411
XmaI	CCCGGG	1 cut(s)	1373
XmiI	GTMKAC	2 cut(s)	1355, 1761
ZrmI	AGTACT	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.