Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008735.1

Orthogroup ID

OG0003533

Physical Location & Seq

Genomic Coordinates Reverse (-)

22124 .. 23705

Gene Structure 1582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008735.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

atgaggaaccgccgctacatcaaccgcaagggtcctctgattgtgtacggcagcgagggggctaagcttgtgaagtcgtttaggaacattcccggtgttgatatcatcaatgtggagaggctcaatttgctgaagctcgctcctggtgggcatcttggccggttcgtcatctggaccaagtcggcttttgagaagctcgactcaatctatgggtcgttcgacaaggcgtctgagaagaagaagggatatgtgttgcctagggccaagatggtgaatgctgacctcgctaggatcatcaactccgacgaggtgcagtctgttgttaggcctattaagaaggatgtcaagagggcgccattgaagaagaacccattgaagaacctcaacaccatgcttaggttgaacccgtacgccaagaccgcaaagaggatggctcttttggcagaggaacaacgcctcaagtctaagaacgagaagctcgaaaagaagaggaaggttaccaaggaggaagctactacgatcaaggcagctggaaaggcctggtaccaaactatgatctccgacagtgattacacagagttcgatgtcttccaaaagtggcttggtgtctcccagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0030312 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042221 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribos_L4_asso_C Ribosomal_L4

Protein Analysis

205

Amino Acids

23.45

Weight (kDa)

10.18

Isoelectric Point (pI)

29.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003533)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09630 AT3G09630 AT5G02870 AT5G02870
fragaria_vesca	FvH4_4g07470 FvH4_6g15170 FvH4_6g15170 FvH4_6g15170
malus_domestica	MD12G1126000.v1.1 MD16G1251600.v1.1
prunus_persica	Prupe.1G078100_v2.0.a1 Prupe.1G078100_v2.0.a1 Prupe.6G242600_v2.0.a1
pyrus_communis	pycom04g10060 pycom12g12420 pycom16g21150
rosa_chinensis	RchiOBHm_Chr3g0468471 RchiOBHm_Chr6g0270851
rosa_laevigata	RLG00000013765 RLG00000024426
rosa_multiflora	Rmu_sc0000642.1_g000029 Rmu_sc0008735.1_g000002 Rmu_sc0008735.1_g000003
rosa_roxburghii	Rroxscaffold_6G00412730 Rroxscaffold_7G00197580
rosa_rugosa	Rorug03G0095700 Rorug06G0056900
rosa_samantha	Rh3AG143500 Rh3BG166000 Rh6AG176200 Rh6BG179400 Rh6CG175600 Rh6DG167900
rosa_wichuraiana	Rw3G013590 Rw6G015010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	543
AccB1I	GGYRCC	2 cut(s)	352, 543
AciI	CCGC	4 cut(s)	10, 13, 25, 420
AclWI	GGATC	1 cut(s)	299
AcoI	YGGCCR	1 cut(s)	157
AcuI	CTGAAG	1 cut(s)	152
AcyI	GRCGYC	2 cut(s)	227, 353
AfaI	GTAC	3 cut(s)	47, 410, 545
AfiI	CCNNNNNNNGG	2 cut(s)	396, 426
AgsI	TTSAA	3 cut(s)	361, 376, 403
AhdI	GACNNNNNGTC	1 cut(s)	226
AjnI	CCWGG	2 cut(s)	142, 539
AluBI	AGCT	6 cut(s)	67, 136, 196, 478, 512, 530
AluI	AGCT	6 cut(s)	67, 136, 196, 478, 512, 530
Alw26I	GTCTC	1 cut(s)	613
AlwI	GGATC	1 cut(s)	299
AoxI	GGCC	4 cut(s)	157, 261, 326, 537
ApeKI	GCWGC	2 cut(s)	51, 527
Asp718I	GGTACC	1 cut(s)	543
AspA2I	CCTAGG	1 cut(s)	257
AspLEI	GCGC	1 cut(s)	355
AspS9I	GGNCC	3 cut(s)	32, 174, 261
AsuC2I	CCSGG	1 cut(s)	93
AsuHPI	GGTGA	1 cut(s)	283
AvaII	GGWCC	2 cut(s)	32, 174
AvrII	CCTAGG	1 cut(s)	257
BanI	GGYRCC	2 cut(s)	352, 543
BbsI	GAAGAC	1 cut(s)	580
BbvI	GCAGC	2 cut(s)	63, 539
BccI	CCATC	2 cut(s)	262, 424
BceAI	ACGGC	1 cut(s)	64
BciT130I	CCWGG	2 cut(s)	144, 541
BcnI	CCSGG	1 cut(s)	93
BcoDI	GTCTC	1 cut(s)	613
BfaI	CTAG	2 cut(s)	258, 288
BfoI	RGCGCY	1 cut(s)	356
BisI	GCNGC	3 cut(s)	13, 52, 528
BlnI	CCTAGG	1 cut(s)	257
BlpI	GCTNAGC	1 cut(s)	63
BlsI	GCNGC	3 cut(s)	14, 53, 529
Bme1390I	CCNGG	3 cut(s)	93, 144, 541
Bme18I	GGWCC	2 cut(s)	32, 174
BmeRI	GACNNNNNGTC	1 cut(s)	226
BmgT120I	GGNCC	3 cut(s)	32, 174, 261
BmiI	GGNNCC	4 cut(s)	8, 33, 354, 545
BmrFI	CCNGG	3 cut(s)	93, 144, 541
BmrI	ACTGGG	1 cut(s)	607
BmsI	GCATC	1 cut(s)	160
BmuI	ACTGGG	1 cut(s)	607
BpiI	GAAGAC	1 cut(s)	580
BplI	GAGNNNNNCTC	2 cut(s)	418, 450
Bpu10I	CCTNAGC	1 cut(s)	395
Bpu1102I	GCTNAGC	1 cut(s)	63
BpuEI	CTTGAG	1 cut(s)	443
BpuMI	CCSGG	1 cut(s)	93
BsaHI	GRCGYC	2 cut(s)	227, 353
BsaJI	CCNNGG	2 cut(s)	257, 501
Bsc4I	CCNNNNNNNGG	2 cut(s)	396, 426
Bse118I	RCCGGY	1 cut(s)	159
Bse1I	ACTGG	1 cut(s)	613
BseBI	CCWGG	2 cut(s)	144, 541
BseDI	CCNNGG	2 cut(s)	257, 501
BseGI	GGATG	2 cut(s)	346, 435
BseLI	CCNNNNNNNGG	2 cut(s)	396, 426
BseMII	CTCAG	1 cut(s)	222
BseNI	ACTGG	1 cut(s)	613
BseXI	GCAGC	2 cut(s)	63, 539
BsgI	GTGCAG	1 cut(s)	332
BshFI	GGCC	4 cut(s)	159, 263, 328, 539
BshNI	GGYRCC	2 cut(s)	352, 543
BsiSI	CCGG	2 cut(s)	93, 160
BsiWI	CGTACG	1 cut(s)	408
BslI	CCNNNNNNNGG	2 cut(s)	396, 426
BsmAI	GTCTC	1 cut(s)	613
BsmI	GAATGC	1 cut(s)	280
BsnI	GGCC	4 cut(s)	159, 263, 328, 539
Bsp143I	GATC	3 cut(s)	291, 519, 555
Bsp1720I	GCTNAGC	1 cut(s)	63
BspACI	CCGC	4 cut(s)	10, 13, 25, 420
BspANI	GGCC	4 cut(s)	159, 263, 328, 539
BspCNI	CTCAG	1 cut(s)	223
BspLI	GGNNCC	4 cut(s)	8, 33, 354, 545
BspPI	GGATC	1 cut(s)	299
BspT107I	GGYRCC	2 cut(s)	352, 543
BsrFI	RCCGGY	1 cut(s)	159
BsrI	ACTGG	1 cut(s)	613
BssAI	RCCGGY	1 cut(s)	159
BssECI	CCNNGG	2 cut(s)	257, 501
BssMI	GATC	3 cut(s)	291, 519, 555
BssNI	GRCGYC	2 cut(s)	227, 353
BssT1I	CCWWGG	2 cut(s)	257, 501
Bst2UI	CCWGG	2 cut(s)	144, 541
Bst4CI	ACNGT	1 cut(s)	566
Bst6I	CTCTTC	1 cut(s)	482
BstACI	GRCGYC	2 cut(s)	227, 353
BstC8I	GCNNGC	1 cut(s)	138
BstDEI	CTNAG	4 cut(s)	63, 231, 395, 465
BstEII	GGTNACC	1 cut(s)	496
BstF5I	GGATG	2 cut(s)	346, 435
BstH2I	RGCGCY	1 cut(s)	356
BstHHI	GCGC	1 cut(s)	355
BstKTI	GATC	3 cut(s)	294, 522, 558
BstMAI	GTCTC	1 cut(s)	613
BstMBI	GATC	3 cut(s)	291, 519, 555
BstMWI	GCNNNNNNNGC	5 cut(s)	127, 284, 419, 440, 536
BstNI	CCWGG	2 cut(s)	144, 541
BstPI	GGTNACC	1 cut(s)	496
BstSCI	CCNGG	3 cut(s)	91, 142, 539
BstV1I	GCAGC	2 cut(s)	63, 539
BstV2I	GAAGAC	1 cut(s)	580
BsuRI	GGCC	4 cut(s)	159, 263, 328, 539
BtsCI	GGATG	2 cut(s)	346, 435
BtsIMutI	CAGTG	1 cut(s)	571
Cac8I	GCNNGC	1 cut(s)	138
CfoI	GCGC	1 cut(s)	355
Cfr10I	RCCGGY	1 cut(s)	159
Cfr13I	GGNCC	3 cut(s)	32, 174, 261
CseI	GACGC	1 cut(s)	216
Csp6I	GTAC	3 cut(s)	46, 409, 544
CviAII	CATG	1 cut(s)	391
CviQI	GTAC	3 cut(s)	46, 409, 544
DdeI	CTNAG	4 cut(s)	63, 231, 395, 465
DinI	GGCGCC	1 cut(s)	354
DpnI	GATC	3 cut(s)	293, 521, 557
DpnII	GATC	3 cut(s)	291, 519, 555
DriI	GACNNNNNGTC	1 cut(s)	226
EaeI	YGGCCR	1 cut(s)	157
Eam1104I	CTCTTC	1 cut(s)	482
Eam1105I	GACNNNNNGTC	1 cut(s)	226
EarI	CTCTTC	1 cut(s)	482
Eco130I	CCWWGG	2 cut(s)	257, 501
Eco147I	AGGCCT	2 cut(s)	328, 539
Eco32I	GATATC	1 cut(s)	103
Eco47I	GGWCC	2 cut(s)	32, 174
Eco57I	CTGAAG	1 cut(s)	152
Eco91I	GGTNACC	1 cut(s)	496
EcoO109I	RGGNCCY	1 cut(s)	32
EcoO65I	GGTNACC	1 cut(s)	496
EcoRII	CCWGG	2 cut(s)	142, 539
EcoRV	GATATC	1 cut(s)	103
EcoT14I	CCWWGG	2 cut(s)	257, 501
EgeI	GGCGCC	1 cut(s)	354
EheI	GGCGCC	1 cut(s)	354
ErhI	CCWWGG	2 cut(s)	257, 501
FaeI	CATG	1 cut(s)	394
FaiI	YATR	4 cut(s)	210, 249, 392, 554
FatI	CATG	1 cut(s)	390
Fnu4HI	GCNGC	3 cut(s)	13, 52, 528
FokI	GGATG	2 cut(s)	353, 442
Fsp4HI	GCNGC	3 cut(s)	13, 52, 528
FspBI	CTAG	2 cut(s)	258, 288
GlaI	GCGC	1 cut(s)	354
GluI	GCNGC	3 cut(s)	13, 52, 528
HaeII	RGCGCY	1 cut(s)	356
HaeIII	GGCC	4 cut(s)	159, 263, 328, 539
HapII	CCGG	2 cut(s)	93, 160
HgaI	GACGC	1 cut(s)	216
HhaI	GCGC	1 cut(s)	355
Hin1I	GRCGYC	2 cut(s)	227, 353
Hin1II	CATG	1 cut(s)	394
Hin6I	GCGC	1 cut(s)	353
HinP1I	GCGC	1 cut(s)	353
HindIII	AAGCTT	1 cut(s)	65
HinfI	GANTC	1 cut(s)	200
HpaII	CCGG	2 cut(s)	93, 160
HphI	GGTGA	1 cut(s)	283
Hpy166II	GTNNAC	1 cut(s)	46
Hpy188I	TCNGA	4 cut(s)	39, 232, 304, 562
Hpy188III	TCNNGA	2 cut(s)	172, 346
Hpy8I	GTNNAC	1 cut(s)	46
Hpy99I	CGWCG	1 cut(s)	308
HpyAV	CCTTC	3 cut(s)	235, 331, 487
HpyCH4III	ACNGT	1 cut(s)	566
HpyCH4V	TGCA	1 cut(s)	313
HpyF10VI	GCNNNNNNNGC	5 cut(s)	127, 284, 419, 440, 536
HpyF3I	CTNAG	4 cut(s)	63, 231, 395, 465
Hsp92I	GRCGYC	2 cut(s)	227, 353
Hsp92II	CATG	1 cut(s)	394
HspAI	GCGC	1 cut(s)	353
KasI	GGCGCC	1 cut(s)	352
KpnI	GGTACC	1 cut(s)	547
Kzo9I	GATC	3 cut(s)	291, 519, 555
LmnI	GCTCC	1 cut(s)	145
LpnPI	CCDG	8 cut(s)	106, 129, 156, 157, 173, 516, 526, 553
Lsp1109I	GCAGC	2 cut(s)	63, 539
LweI	GCATC	1 cut(s)	160
MaeI	CTAG	2 cut(s)	258, 288
MaeIII	GTNAC	1 cut(s)	496
MalI	GATC	3 cut(s)	293, 521, 557
MboI	GATC	3 cut(s)	291, 519, 555
MboII	GAAGA	7 cut(s)	247, 250, 373, 376, 388, 499, 580
MluCI	AATT	1 cut(s)	124
Mly113I	GGCGCC	1 cut(s)	353
MlyI	GAGTC	1 cut(s)	194
MmeI	TCCRAC	2 cut(s)	327, 585
MseI	TTAA	1 cut(s)	333
MslI	CAYNNNNRTG	1 cut(s)	110
MspA1I	CMGCKG	1 cut(s)	530
MspI	CCGG	2 cut(s)	93, 160
MspR9I	CCNGG	3 cut(s)	93, 144, 541
Mva1269I	GAATGC	1 cut(s)	280
MvaI	CCWGG	2 cut(s)	144, 541
MwoI	GCNNNNNNNGC	5 cut(s)	127, 284, 419, 440, 536
NarI	GGCGCC	1 cut(s)	353
NciI	CCSGG	1 cut(s)	93
NdeII	GATC	3 cut(s)	291, 519, 555
NlaIII	CATG	1 cut(s)	394
NlaIV	GGNNCC	4 cut(s)	8, 33, 354, 545
PceI	AGGCCT	2 cut(s)	328, 539
PcsI	WCGNNNNNNNCGW	1 cut(s)	477
PctI	GAATGC	1 cut(s)	280
Pfl23II	CGTACG	1 cut(s)	408
PflFI	GACNNNGTC	1 cut(s)	178
PkrI	GCNGC	3 cut(s)	14, 53, 529
PleI	GAGTC	1 cut(s)	194
PluTI	GGCGCC	1 cut(s)	356
PpsI	GAGTC	1 cut(s)	194
PpuMI	RGGWCCY	1 cut(s)	32
Psp5II	RGGWCCY	1 cut(s)	32
Psp6I	CCWGG	2 cut(s)	142, 539
PspEI	GGTNACC	1 cut(s)	496
PspGI	CCWGG	2 cut(s)	142, 539
PspLI	CGTACG	1 cut(s)	408
PspN4I	GGNNCC	4 cut(s)	8, 33, 354, 545
PspPI	GGNCC	3 cut(s)	32, 174, 261
PspPPI	RGGWCCY	1 cut(s)	32
PsrI	GAACNNNNNNTAC	1 cut(s)	31
PsyI	GACNNNGTC	1 cut(s)	178
PvuII	CAGCTG	1 cut(s)	530
RsaI	GTAC	3 cut(s)	47, 410, 545
RsaNI	GTAC	3 cut(s)	46, 409, 544
RseI	CAYNNNNRTG	1 cut(s)	110
SaqAI	TTAA	1 cut(s)	333
SatI	GCNGC	3 cut(s)	13, 52, 528
Sau3AI	GATC	3 cut(s)	291, 519, 555
Sau96I	GGNCC	3 cut(s)	32, 174, 261
SchI	GAGTC	1 cut(s)	194
ScrFI	CCNGG	3 cut(s)	93, 144, 541
SfaNI	GCATC	1 cut(s)	160
SfoI	GGCGCC	1 cut(s)	354
SinI	GGWCC	2 cut(s)	32, 174
SmiMI	CAYNNNNRTG	1 cut(s)	110
SmlI	CTYRAG	1 cut(s)	458
SmoI	CTYRAG	1 cut(s)	458
Sse9I	AATT	1 cut(s)	124
SseBI	AGGCCT	2 cut(s)	328, 539
SsiI	CCGC	4 cut(s)	10, 13, 25, 420
SspDI	GGCGCC	1 cut(s)	352
SspMI	CTAG	2 cut(s)	258, 288
StuI	AGGCCT	2 cut(s)	328, 539
StyD4I	CCNGG	3 cut(s)	91, 142, 539
StyI	CCWWGG	2 cut(s)	257, 501
TaaI	ACNGT	1 cut(s)	566
TaqI	TCGA	4 cut(s)	198, 219, 480, 582
TasI	AATT	1 cut(s)	124
TauI	GCSGC	1 cut(s)	15
Tru1I	TTAA	1 cut(s)	333
Tru9I	TTAA	1 cut(s)	333
TscAI	CASTG	1 cut(s)	571
TseI	GCWGC	2 cut(s)	51, 527
TspRI	CASTG	1 cut(s)	571
Tth111I	GACNNNGTC	1 cut(s)	178
VpaK11BI	GGWCC	2 cut(s)	32, 174
XcmI	CCANNNNNNNNNTGG	1 cut(s)	599
XmaJI	CCTAGG	1 cut(s)	257
XspI	CTAG	2 cut(s)	258, 288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.