AT3G09630

60S ribosomal protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
2953693 .. 2955748
2056 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G09630.2

Sequence Viewer

Length: 1221 bp
ATGGCCGCCGCCGCTGCTCGTCCTCTCGTCACCATCCAAACCTTGGATGGTGACATGTCCACCGATCAATCCTCCACCGTCGTACTTCCCGACGTCATGACGGCGCCAGTTCGACCAGACATCGTTAACTTCGTTCACGCCCAAATCTCCAACAACAGCCGTCAGCCATACGCCGTATCGAAGAAGGCCGGTCACCAGACCTCCGCCGAGTCCTGGGGAACCGGACGTGCCGTGTCTCGTATCCCTCGTGTTCCCGGTGGTGGTACTCACCGTGCTGGTCAAGCTGCGTTCGGTAACATGTGTCGTGGTGGTCGTATGTTCGCTCCAACCAAGATCTGGCGCCGCTGGCACCGTCGTGTCAATGTCAACATGAAGCGTCACGCAATCGTCTCAGCTATCGCTGCAACTGCTGTTCCTGCGCTTGTGATGGCTCGTGGTCACAAGATCGAGAATGTTCCTGAGATGCCTCTTGTTGTGAGTGACTCCGCCGAAGCTGTGGAGAAGACCTCAGCTGCGATCAAGGTTTTGAAACAGATCGGTGCTTATGATGATGCTGAGAAGGCAAAGAACAGCATTGGAATCCGTCCTGGTAAAGGTAAAATGAGGAACCGTCGTTACATTTCTAGGAAAGGTCCTCTGGTGGTTTATGGAACTGAAGGATCTAAGATAGTTAAGGCGTTTAGAAACCTTCCTGGTGTTGAGCTTTGTCATGTGGAGAGGCTTAATTTGTTGAAGCTTGCTCCTGGTGGTCACCTTGGTCGGTTTGTGATCTGGACCAAGTCTGCCTTTGAGAAGCTTGAGTCTATCTATGGTTCGTTTGAGAAGCCATCAGAGAAGAAGAAGGGGTATGTGCTTCCTCGTGCAAAGATGGTGAATGCTGATCTTGCCAGGATTATCAATTCAGATGAGATTCAGAGTGTTGTGAATCCGATCAAGAAGGATGCGAAGAGGGCTGTTCTTAAGAAGAATCCATTGAAGAATCTCAATGTGATGTTGAAGTTGAATCCTTATGCTAAGACCGCGAAGAGGATGTCACTGTTAGCTGAAGCACAGAGAGTTAAGGCTAAGAAGGAGAAGCTCGCCAAGAAGAGGAAAACCGTTACCAAGGAGGAGGCGTTGGCAATCAAAGCAGCAGGCAAGTCGTGGTACAAGACTATGATCTCCGACAGTGATTACACCGAGTTTGATAACTTCACCAAATGGCTCGGTGCTAGCCAGTAA

Protein Analysis

406

Amino Acids

44.7

Weight (kDa)

10.34

Isoelectric Point (pI)

38.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L4 PF00573 29 - 268 4.7e-37 Ribosomal protein L4/L1 family
Ribos_L4_asso_C PF14374 281 - 353 2.2e-28 60S ribosomal protein L4 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 96
AccB1I GGYRCC 3 cut(s) 103, 339, 348
AccB7I CCANNNNNTGG 2 cut(s) 43, 336
AccII CGCG 1 cut(s) 1022
AciI CCGC 7 cut(s) 6, 9, 12, 204, 343, 486, 1020
AclWI GGATC 1 cut(s) 667
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 2 cut(s) 675, 1065
AcyI GRCGYC 3 cut(s) 93, 104, 340
AfaI GTAC 3 cut(s) 84, 265, 1148
AfiI CCNNNNNNNGG 7 cut(s) 43, 213, 260, 336, 593, 1026, 1089
AflII CTTAAG 1 cut(s) 959
AflIII ACRYGT 2 cut(s) 54, 297
AgsI TTSAA 5 cut(s) 529, 733, 976, 997, 1003
AjiI CACGTC 1 cut(s) 227
AjnI CCWGG 5 cut(s) 212, 586, 691, 742, 887
AleI CACNNNNGTG 1 cut(s) 354
AluBI AGCT 9 cut(s) 284, 395, 494, 512, 703, 736, 796, 1043, 1078
AluI AGCT 9 cut(s) 284, 395, 494, 512, 703, 736, 796, 1043, 1078
Alw26I GTCTC 2 cut(s) 240, 394
AlwI GGATC 1 cut(s) 667
AoxI GGCC 2 cut(s) 3, 186
ApeKI GCWGC 5 cut(s) 14, 284, 401, 512, 1130
ArsI GACNNNNNNTTYG 2 cut(s) 1016, 1048
AspLEI GCGC 3 cut(s) 106, 342, 421
AspS9I GGNCC 2 cut(s) 632, 774
AsuC2I CCSGG 1 cut(s) 255
AsuHPI GGTGA 7 cut(s) 22, 62, 185, 260, 743, 883, 1186
AsuNHI GCTAGC 1 cut(s) 1211
AvaII GGWCC 2 cut(s) 632, 774
BanI GGYRCC 3 cut(s) 103, 339, 348
BauI CACGAG 3 cut(s) 246, 432, 858
BbsI GAAGAC 1 cut(s) 509
BbvCI CCTCAGC 1 cut(s) 508
BbvI GCAGC 4 cut(s) 271, 388, 499, 1142
BccI CCATC 5 cut(s) 41, 41, 421, 835, 862
BceAI ACGGC 4 cut(s) 117, 144, 158, 215
BcgI CGANNNNNNTGC 2 cut(s) 1122, 1156
BciT130I CCWGG 5 cut(s) 214, 588, 693, 744, 889
BciVI GTATCC 1 cut(s) 251
BcnI CCSGG 1 cut(s) 255
BcoDI GTCTC 2 cut(s) 240, 394
BfaI CTAG 2 cut(s) 624, 1212
BfoI RGCGCY 2 cut(s) 107, 343
BfrI CTTAAG 1 cut(s) 959
BfuI GTATCC 1 cut(s) 251
BglII AGATCT 1 cut(s) 333
BisI GCNGC 9 cut(s) 6, 9, 12, 15, 285, 343, 402, 513, 1131
BlsI GCNGC 9 cut(s) 7, 10, 13, 16, 286, 344, 403, 514, 1132
Bme1390I CCNGG 6 cut(s) 214, 255, 588, 693, 744, 889
Bme18I GGWCC 2 cut(s) 632, 774
BmgBI CACGTC 1 cut(s) 227
BmgT120I GGNCC 2 cut(s) 632, 774
BmiI GGNNCC 5 cut(s) 105, 220, 341, 350, 608
BmrFI CCNGG 6 cut(s) 214, 255, 588, 693, 744, 889
BmsI GCATC 3 cut(s) 453, 541, 931
BmtI GCTAGC 1 cut(s) 1215
BpiI GAAGAC 1 cut(s) 509
BplI GAGNNNNNCTC 2 cut(s) 491, 523
Bpu10I CCTNAGC 1 cut(s) 508
BpuEI CTTGAG 1 cut(s) 818
BpuMI CCSGG 1 cut(s) 255
BsaHI GRCGYC 3 cut(s) 93, 104, 340
BsaJI CCNNGG 4 cut(s) 42, 213, 754, 1104
BsaWI WCCGGW 1 cut(s) 221
BsaXI ACNNNNNCTCC 4 cut(s) 185, 215, 1100, 1130
Bsc4I CCNNNNNNNGG 7 cut(s) 43, 213, 260, 336, 593, 1026, 1089
Bse118I RCCGGY 1 cut(s) 188
Bse1I ACTGG 2 cut(s) 107, 1216
BseBI CCWGG 5 cut(s) 214, 588, 693, 744, 889
BseDI CCNNGG 4 cut(s) 42, 213, 754, 1104
BseGI GGATG 4 cut(s) 33, 52, 946, 1035
BseLI CCNNNNNNNGG 7 cut(s) 43, 213, 260, 336, 593, 1026, 1089
BseMII CTCAG 4 cut(s) 405, 450, 522, 546
BseNI ACTGG 2 cut(s) 107, 1216
BseRI GAGGAG 1 cut(s) 1124
BseXI GCAGC 4 cut(s) 271, 388, 499, 1142
Bsh1236I CGCG 1 cut(s) 1022
BshFI GGCC 2 cut(s) 5, 188
BshNI GGYRCC 3 cut(s) 103, 339, 348
BsiSI CCGG 3 cut(s) 189, 222, 255
BslI CCNNNNNNNGG 7 cut(s) 43, 213, 260, 336, 593, 1026, 1089
BsmAI GTCTC 2 cut(s) 240, 394
BsmBI CGTCTC 1 cut(s) 394
BsmI GAATGC 1 cut(s) 880
BsnI GGCC 2 cut(s) 5, 188
BspACI CCGC 7 cut(s) 6, 9, 12, 204, 343, 486, 1020
BspANI GGCC 2 cut(s) 5, 188
BspCNI CTCAG 4 cut(s) 404, 451, 521, 547
BspFNI CGCG 1 cut(s) 1022
BspHI TCATGA 1 cut(s) 96
BspLI GGNNCC 5 cut(s) 105, 220, 341, 350, 608
BspOI GCTAGC 1 cut(s) 1215
BspPI GGATC 1 cut(s) 667
BspT107I GGYRCC 3 cut(s) 103, 339, 348
BspTI CTTAAG 1 cut(s) 959
BsrFI RCCGGY 1 cut(s) 188
BsrI ACTGG 2 cut(s) 107, 1216
BssAI RCCGGY 1 cut(s) 188
BssECI CCNNGG 4 cut(s) 42, 213, 754, 1104
BssNI GRCGYC 3 cut(s) 93, 104, 340
BssSI CACGAG 3 cut(s) 246, 432, 858
BssT1I CCWWGG 3 cut(s) 42, 754, 1104
Bst2BI CACGAG 3 cut(s) 246, 432, 858
Bst2UI CCWGG 5 cut(s) 214, 588, 693, 744, 889
Bst4CI ACNGT 7 cut(s) 79, 272, 353, 611, 1038, 1099, 1169
Bst6I CTCTTC 3 cut(s) 941, 1019, 1082
BstACI GRCGYC 3 cut(s) 93, 104, 340
BstAFI CTTAAG 1 cut(s) 959
BstC8I GCNNGC 5 cut(s) 347, 738, 1080, 1135, 1213
BstDEI CTNAG 7 cut(s) 391, 459, 508, 555, 663, 1014, 1065
BstEII GGTNACC 2 cut(s) 191, 749
BstENI CCTNNNNNAGG 1 cut(s) 591
BstF5I GGATG 4 cut(s) 33, 52, 946, 1035
BstFNI CGCG 1 cut(s) 1022
BstH2I RGCGCY 2 cut(s) 107, 343
BstHHI GCGC 3 cut(s) 106, 342, 421
BstMAI GTCTC 2 cut(s) 240, 394
BstNI CCWGG 5 cut(s) 214, 588, 693, 744, 889
BstNSI RCATGY 2 cut(s) 58, 301
BstPI GGTNACC 2 cut(s) 191, 749
BstSCI CCNGG 6 cut(s) 212, 253, 586, 691, 742, 887
BstUI CGCG 1 cut(s) 1022
BstV1I GCAGC 4 cut(s) 271, 388, 499, 1142
BstV2I GAAGAC 1 cut(s) 509
BstX2I RGATCY 2 cut(s) 333, 659
BstYI RGATCY 2 cut(s) 333, 659
BsuI GTATCC 1 cut(s) 251
BsuRI GGCC 2 cut(s) 5, 188
BtrI CACGTC 1 cut(s) 227
BtsCI GGATG 4 cut(s) 33, 52, 946, 1035
BtsIMutI CAGTG 2 cut(s) 1034, 1174
Cac8I GCNNGC 5 cut(s) 347, 738, 1080, 1135, 1213
CciI TCATGA 1 cut(s) 96
CfoI GCGC 3 cut(s) 106, 342, 421
Cfr10I RCCGGY 1 cut(s) 188
Cfr13I GGNCC 2 cut(s) 632, 774
CseI GACGC 1 cut(s) 365
Csp6I GTAC 3 cut(s) 83, 264, 1147
CviAII CATG 5 cut(s) 55, 97, 298, 370, 710
CviQI GTAC 3 cut(s) 83, 264, 1147
DdeI CTNAG 7 cut(s) 391, 459, 508, 555, 663, 1014, 1065
DinI GGCGCC 2 cut(s) 105, 341
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 941, 1019, 1082
EarI CTCTTC 3 cut(s) 941, 1019, 1082
EciI GGCGGA 2 cut(s) 193, 475
Eco130I CCWWGG 3 cut(s) 42, 754, 1104
Eco47I GGWCC 2 cut(s) 632, 774
Eco57I CTGAAG 2 cut(s) 675, 1065
Eco91I GGTNACC 2 cut(s) 191, 749
EcoNI CCTNNNNNAGG 1 cut(s) 591
EcoO109I RGGNCCY 1 cut(s) 632
EcoO65I GGTNACC 2 cut(s) 191, 749
EcoRII CCWGG 5 cut(s) 212, 586, 691, 742, 887
EcoT14I CCWWGG 3 cut(s) 42, 754, 1104
EgeI GGCGCC 2 cut(s) 105, 341
EheI GGCGCC 2 cut(s) 105, 341
ErhI CCWWGG 3 cut(s) 42, 754, 1104
Esp3I CGTCTC 1 cut(s) 394
FaeI CATG 5 cut(s) 58, 100, 301, 373, 713
FalI AAGNNNNNCTT 2 cut(s) 770, 802
FatI CATG 5 cut(s) 54, 96, 297, 369, 709
Fnu4HI GCNGC 9 cut(s) 6, 9, 12, 15, 285, 343, 402, 513, 1131
FokI GGATG 4 cut(s) 20, 59, 953, 1042
Fsp4HI GCNGC 9 cut(s) 6, 9, 12, 15, 285, 343, 402, 513, 1131
FspBI CTAG 2 cut(s) 624, 1212
GlaI GCGC 3 cut(s) 105, 341, 420
GluI GCNGC 9 cut(s) 6, 9, 12, 15, 285, 343, 402, 513, 1131
HaeII RGCGCY 2 cut(s) 107, 343
HaeIII GGCC 2 cut(s) 5, 188
HapII CCGG 3 cut(s) 189, 222, 255
HgaI GACGC 1 cut(s) 365
HhaI GCGC 3 cut(s) 106, 342, 421
Hin1I GRCGYC 3 cut(s) 93, 104, 340
Hin1II CATG 5 cut(s) 58, 100, 301, 373, 713
Hin6I GCGC 3 cut(s) 104, 340, 419
HinP1I GCGC 3 cut(s) 104, 340, 419
HincII GTYRAC 2 cut(s) 127, 367
HindII GTYRAC 2 cut(s) 127, 367
HindIII AAGCTT 2 cut(s) 734, 794
HinfI GANTC 9 cut(s) 209, 482, 579, 800, 910, 925, 967, 979, 1003
HpaI GTTAAC 1 cut(s) 127
HpaII CCGG 3 cut(s) 189, 222, 255
HphI GGTGA 7 cut(s) 22, 62, 185, 260, 743, 883, 1186
Hpy166II GTNNAC 4 cut(s) 60, 127, 136, 367
Hpy188I TCNGA 5 cut(s) 832, 904, 915, 930, 1165
Hpy188III TCNNGA 6 cut(s) 89, 97, 448, 458, 772, 934
Hpy8I GTNNAC 4 cut(s) 60, 127, 136, 367
Hpy99I CGWCG 4 cut(s) 83, 95, 357, 615
HpyAV CCTTC 7 cut(s) 178, 553, 650, 698, 835, 931, 1063
HpyCH4III ACNGT 7 cut(s) 79, 272, 353, 611, 1038, 1099, 1169
HpyCH4IV ACGT 2 cut(s) 93, 226
HpyCH4V TGCA 2 cut(s) 404, 863
HpyF3I CTNAG 7 cut(s) 391, 459, 508, 555, 663, 1014, 1065
HpySE526I ACGT 2 cut(s) 93, 226
Hsp92I GRCGYC 3 cut(s) 93, 104, 340
Hsp92II CATG 5 cut(s) 58, 100, 301, 373, 713
HspAI GCGC 3 cut(s) 104, 340, 419
KasI GGCGCC 2 cut(s) 103, 339
KspAI GTTAAC 1 cut(s) 127
LmnI GCTCC 2 cut(s) 328, 745
Lsp1109I GCAGC 4 cut(s) 271, 388, 499, 1142
LweI GCATC 3 cut(s) 453, 541, 931
MaeI CTAG 2 cut(s) 624, 1212
MaeII ACGT 2 cut(s) 93, 226
MboII GAAGA 9 cut(s) 193, 514, 847, 850, 958, 976, 988, 1036, 1099
MflI RGATCY 2 cut(s) 333, 659
MluCI AATT 2 cut(s) 724, 898
Mly113I GGCGCC 2 cut(s) 104, 340
MlyI GAGTC 3 cut(s) 218, 476, 809
MmeI TCCRAC 3 cut(s) 174, 350, 1188
MseI TTAA 5 cut(s) 126, 672, 723, 960, 1059
MslI CAYNNNNRTG 1 cut(s) 354
MspA1I CMGCKG 3 cut(s) 14, 345, 512
MspCI CTTAAG 1 cut(s) 959
MspI CCGG 3 cut(s) 189, 222, 255
MspR9I CCNGG 6 cut(s) 214, 255, 588, 693, 744, 889
Mva1269I GAATGC 1 cut(s) 880
MvaI CCWGG 5 cut(s) 214, 588, 693, 744, 889
MvnI CGCG 1 cut(s) 1022
NarI GGCGCC 2 cut(s) 104, 340
NciI CCSGG 1 cut(s) 255
NheI GCTAGC 1 cut(s) 1211
NlaIII CATG 5 cut(s) 58, 100, 301, 373, 713
NlaIV GGNNCC 5 cut(s) 105, 220, 341, 350, 608
NmeAIII GCCGAG 1 cut(s) 232
NmuCI GTSAC 8 cut(s) 28, 50, 191, 377, 437, 479, 749, 1032
NspI RCATGY 2 cut(s) 58, 301
OliI CACNNNNGTG 1 cut(s) 354
PagI TCATGA 1 cut(s) 96
PciI ACATGT 2 cut(s) 54, 297
PcsI WCGNNNNNNNCGW 4 cut(s) 87, 129, 244, 310
PctI GAATGC 1 cut(s) 880
PfeI GAWTC 6 cut(s) 579, 910, 925, 967, 979, 1003
PflFI GACNNNGTC 1 cut(s) 778
PflMI CCANNNNNTGG 2 cut(s) 43, 336
PkrI GCNGC 9 cut(s) 7, 10, 13, 16, 286, 344, 403, 514, 1132
PleI GAGTC 3 cut(s) 217, 476, 808
PluTI GGCGCC 2 cut(s) 107, 343
PpsI GAGTC 3 cut(s) 217, 476, 808
PpuMI RGGWCCY 1 cut(s) 632
PscI ACATGT 2 cut(s) 54, 297
Psp5II RGGWCCY 1 cut(s) 632
Psp6I CCWGG 5 cut(s) 212, 586, 691, 742, 887
PspEI GGTNACC 2 cut(s) 191, 749
PspGI CCWGG 5 cut(s) 212, 586, 691, 742, 887
PspN4I GGNNCC 5 cut(s) 105, 220, 341, 350, 608
PspPI GGNCC 2 cut(s) 632, 774
PspPPI RGGWCCY 1 cut(s) 632
PsrI GAACNNNNNNTAC 2 cut(s) 599, 631
PsuI RGATCY 2 cut(s) 333, 659
PsyI GACNNNGTC 1 cut(s) 778
PvuII CAGCTG 1 cut(s) 512
RsaI GTAC 3 cut(s) 84, 265, 1148
RsaNI GTAC 3 cut(s) 83, 264, 1147
RseI CAYNNNNRTG 1 cut(s) 354
SaqAI TTAA 5 cut(s) 126, 672, 723, 960, 1059
SatI GCNGC 9 cut(s) 6, 9, 12, 15, 285, 343, 402, 513, 1131
Sau96I GGNCC 2 cut(s) 632, 774
SchI GAGTC 3 cut(s) 218, 476, 809
ScrFI CCNGG 6 cut(s) 214, 255, 588, 693, 744, 889
SfaNI GCATC 3 cut(s) 453, 541, 931
SfoI GGCGCC 2 cut(s) 105, 341
SinI GGWCC 2 cut(s) 632, 774
SmiMI CAYNNNNRTG 1 cut(s) 354
SmlI CTYRAG 2 cut(s) 797, 959
SmoI CTYRAG 2 cut(s) 797, 959
Sse9I AATT 2 cut(s) 724, 898
SsiI CCGC 7 cut(s) 6, 9, 12, 204, 343, 486, 1020
SspDI GGCGCC 2 cut(s) 103, 339
SspMI CTAG 2 cut(s) 624, 1212
StyD4I CCNGG 6 cut(s) 212, 253, 586, 691, 742, 887
StyI CCWWGG 3 cut(s) 42, 754, 1104
TaaI ACNGT 7 cut(s) 79, 272, 353, 611, 1038, 1099, 1169
TaiI ACGT 2 cut(s) 96, 229
TaqI TCGA 3 cut(s) 112, 179, 447
TasI AATT 2 cut(s) 724, 898
TauI GCSGC 4 cut(s) 8, 11, 14, 345
TfiI GAWTC 6 cut(s) 579, 910, 925, 967, 979, 1003
Tru1I TTAA 5 cut(s) 126, 672, 723, 960, 1059
Tru9I TTAA 5 cut(s) 126, 672, 723, 960, 1059
TscAI CASTG 2 cut(s) 1041, 1174
TseFI GTSAC 8 cut(s) 28, 50, 191, 377, 437, 479, 749, 1032
TseI GCWGC 5 cut(s) 14, 284, 401, 512, 1130
Tsp45I GTSAC 8 cut(s) 28, 50, 191, 377, 437, 479, 749, 1032
TspDTI ATGAA 1 cut(s) 386
TspGWI ACGGA 1 cut(s) 572
TspRI CASTG 2 cut(s) 1041, 1174
Tth111I GACNNNGTC 1 cut(s) 778
Van91I CCANNNNNTGG 2 cut(s) 43, 336
Vha464I CTTAAG 1 cut(s) 959
VpaK11BI GGWCC 2 cut(s) 632, 774
XagI CCTNNNNNAGG 1 cut(s) 591
XceI RCATGY 2 cut(s) 58, 301
XcmI CCANNNNNNNNNTGG 3 cut(s) 40, 44, 333
XspI CTAG 2 cut(s) 624, 1212
ZraI GACGTC 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.