Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0003533

Physical Location & Seq

Genomic Coordinates Forward (+)

12683752 .. 12685948

Gene Structure 2197 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG143500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGCCGCCGTCGCAGCTGTCCGCCCCCTCGTCACCGTCCAAGCCTTGGAAGGCGACATGGCCACCGATCAATCCCAGACCGCCCCTCTCCCCGACGTCATGAAGGCCTCTATCCGACCCGATATCGTCACCTTCGTCCACTCCAACATCTCCAAGAACAGCCGCCAGGCCTACGCCGTCTCCAAGAAGGCCGGCCACCAGACCTCCGCCGAGTCCTGGGGAACCGGCCGCGCCGTCTCCCGTATCCCCCGCGTTCCCGGCGGAGGGACCCACCGCGCCGGGCAGGGAGCCTTCGGGAACATGTGCCGCGGCGGAAGGATGTTCGCTCCGACCAAGATCTGGCGCCGGTGGCACCGCAAGATCAACGTGAACCAGAAGAGGTACGCCATGGTCTCGGCCATTGCTGCGTCGTCGGTGCCGTCTCTGGTCATGGCTAGGGGTCACAAAATCGAGACAGTTCCCGAATTGCCCTTGGTCATCAGTGACTCTGCCGAGAGCGTGGAGAAGACTTCTGGAGCTATCAAGGTGCTGCAGCAGATTGGAGCTTATGCCGATGCCGAGAAGGCTAAGGACAGCCATTCGATTCGGCCGGGGAAGGGTAAGATGAGGAACCGCCGCTACATCAACCGCAAGGGTCCTCTGATTGTGTACGGCAGCGAGGGGGCTAAGCTTGTGAATTCGTTTAGGAACATTCCCGGTGTTGATATCATCAATGTGGAGAGGCTCAATTTGCTGAAGCTCGCTCCTGGTGGGCATCTTGGCCGGTTCGTCATCTGGACCAAGTCGGCTTTTGAGAAGCTCGACTCAATCTATGGGTCGTTCGACAAGGCGTCTGAGAAGAAGAAGGGGTATGTGTTGCCTAGGGCTAAGATGGTGAATGCTGACCTCGCTAGGATCATCAACTCCGACGAGGTGCAGTCTGTTGTTAGGCCTATTAAGAAGGATGTCAAGAGGGCGCCATTGAAGAAGAACCCATTGAAGAACCTCAACACCATGCTTAGGTTGAACCCGTACGCCAAGACCGCAAAGAGGATGGCTCTTTTGGCAGAGGAACAACGCCTCAAGTCTAAGAACGAGAAGCTCGAAAAGAAGAGGAAGGTTACCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0030312 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042221 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribos_L4_asso_C Ribosomal_L4

Protein Analysis

369

Amino Acids

40.67

Weight (kDa)

10.57

Isoelectric Point (pI)

38.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L4	PF00573	30 - 269	3.7e-35	Ribosomal protein L4/L1 family
Ribos_L4_asso_C	PF14374	282 - 355	3.2e-29	60S ribosomal protein L4 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003533)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09630 AT3G09630 AT5G02870 AT5G02870
fragaria_vesca	FvH4_4g07470 FvH4_6g15170 FvH4_6g15170 FvH4_6g15170
malus_domestica	MD12G1126000.v1.1 MD16G1251600.v1.1
prunus_persica	Prupe.1G078100_v2.0.a1 Prupe.1G078100_v2.0.a1 Prupe.6G242600_v2.0.a1
pyrus_communis	pycom04g10060 pycom12g12420 pycom16g21150
rosa_chinensis	RchiOBHm_Chr3g0468471 RchiOBHm_Chr6g0270851
rosa_laevigata	RLG00000013765 RLG00000024426
rosa_multiflora	Rmu_sc0000642.1_g000029 Rmu_sc0008735.1_g000002 Rmu_sc0008735.1_g000003
rosa_roxburghii	Rroxscaffold_6G00412730 Rroxscaffold_7G00197580
rosa_rugosa	Rorug03G0095700 Rorug06G0056900
rosa_samantha	Rh3AG143500 Rh3BG166000 Rh6AG176200 Rh6BG179400 Rh6CG175600 Rh6DG167900
rosa_wichuraiana	Rw3G013590 Rw6G015010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	99
AccB1I	GGYRCC	4 cut(s)	342, 351, 415, 955
AccB7I	CCANNNNNTGG	2 cut(s)	46, 339
AccII	CGCG	4 cut(s)	231, 252, 276, 309
AclWI	GGATC	1 cut(s)	902
AcoI	YGGCCR	7 cut(s)	3, 60, 193, 226, 396, 587, 760
AcsI	RAATTY	1 cut(s)	676
AcuI	CTGAAG	1 cut(s)	755
AcyI	GRCGYC	4 cut(s)	96, 343, 830, 956
AfaI	GTAC	3 cut(s)	383, 650, 1013
AfiI	CCNNNNNNNGG	8 cut(s)	46, 216, 263, 264, 339, 596, 999, 1029
AflIII	ACRYGT	1 cut(s)	300
AgsI	TTSAA	3 cut(s)	964, 979, 1006
AhdI	GACNNNNNGTC	1 cut(s)	829
AjnI	CCWGG	3 cut(s)	165, 215, 745
AluBI	AGCT	7 cut(s)	17, 518, 545, 670, 739, 799, 1081
AluI	AGCT	7 cut(s)	17, 518, 545, 670, 739, 799, 1081
Alw26I	GTCTC	5 cut(s)	184, 241, 397, 426, 446
AlwI	GGATC	1 cut(s)	902
ApeKI	GCWGC	5 cut(s)	14, 404, 529, 532, 654
ApoI	RAATTY	1 cut(s)	676
AspA2I	CCTAGG	1 cut(s)	860
AspLEI	GCGC	4 cut(s)	233, 278, 345, 958
AspS9I	GGNCC	3 cut(s)	267, 635, 777
AsuC2I	CCSGG	4 cut(s)	258, 280, 591, 696
AsuHPI	GGTGA	3 cut(s)	25, 121, 886
AvaII	GGWCC	3 cut(s)	267, 635, 777
AvrII	CCTAGG	1 cut(s)	860
BalI	TGGCCA	1 cut(s)	62
BanI	GGYRCC	4 cut(s)	342, 351, 415, 955
BbsI	GAAGAC	1 cut(s)	512
BbvI	GCAGC	5 cut(s)	26, 391, 516, 544, 666
BccI	CCATC	2 cut(s)	865, 1027
BceAI	ACGGC	4 cut(s)	161, 218, 403, 667
BciT130I	CCWGG	3 cut(s)	167, 217, 747
BciVI	GTATCC	1 cut(s)	254
BcnI	CCSGG	4 cut(s)	258, 280, 591, 696
BcoDI	GTCTC	5 cut(s)	184, 241, 397, 426, 446
BfaI	CTAG	3 cut(s)	435, 861, 891
BfmI	CTRYAG	1 cut(s)	530
BfoI	RGCGCY	2 cut(s)	346, 959
BfuI	GTATCC	1 cut(s)	254
BglI	GCCNNNNNGGC	1 cut(s)	563
BglII	AGATCT	1 cut(s)	336
BlnI	CCTAGG	1 cut(s)	860
BlpI	GCTNAGC	1 cut(s)	666
Bme1390I	CCNGG	7 cut(s)	167, 217, 258, 280, 591, 696, 747
Bme18I	GGWCC	3 cut(s)	267, 635, 777
BmeRI	GACNNNNNGTC	1 cut(s)	829
BmgT120I	GGNCC	3 cut(s)	267, 635, 777
BmrFI	CCNGG	7 cut(s)	167, 217, 258, 280, 591, 696, 747
BmsI	GCATC	2 cut(s)	544, 763
BpiI	GAAGAC	1 cut(s)	512
BplI	GAGNNNNNCTC	2 cut(s)	1021, 1053
BpmI	CTGGAG	1 cut(s)	534
Bpu10I	CCTNAGC	2 cut(s)	567, 998
Bpu1102I	GCTNAGC	1 cut(s)	666
BpuEI	CTTGAG	1 cut(s)	1046
BpuMI	CCSGG	4 cut(s)	258, 280, 591, 696
BsaHI	GRCGYC	4 cut(s)	96, 343, 830, 956
BsaI	GGTCTC	1 cut(s)	397
BsaJI	CCNNGG	7 cut(s)	45, 216, 307, 387, 471, 590, 860
BsaXI	ACNNNNNCTCC	4 cut(s)	164, 188, 194, 218
Bsc4I	CCNNNNNNNGG	8 cut(s)	46, 216, 263, 264, 339, 596, 999, 1029
Bse118I	RCCGGY	4 cut(s)	191, 224, 345, 762
Bse3DI	GCAATG	1 cut(s)	399
BseBI	CCWGG	3 cut(s)	167, 217, 747
BseDI	CCNNGG	7 cut(s)	45, 216, 307, 387, 471, 590, 860
BseGI	GGATG	3 cut(s)	324, 949, 1038
BseLI	CCNNNNNNNGG	8 cut(s)	46, 216, 263, 264, 339, 596, 999, 1029
BseMI	GCAATG	1 cut(s)	399
BseMII	CTCAG	1 cut(s)	825
BseX3I	CGGCCG	2 cut(s)	226, 587
BseXI	GCAGC	5 cut(s)	26, 391, 516, 544, 666
BsgI	GTGCAG	1 cut(s)	935
Bsh1236I	CGCG	4 cut(s)	231, 252, 276, 309
Bsh1285I	CGRYCG	2 cut(s)	229, 590
BshNI	GGYRCC	4 cut(s)	342, 351, 415, 955
BsiEI	CGRYCG	2 cut(s)	229, 590
BsiSI	CCGG	8 cut(s)	192, 225, 258, 279, 346, 590, 696, 763
BsiWI	CGTACG	1 cut(s)	1011
BslFI	GGGAC	1 cut(s)	280
BslI	CCNNNNNNNGG	8 cut(s)	46, 216, 263, 264, 339, 596, 999, 1029
BsmAI	GTCTC	5 cut(s)	184, 241, 397, 426, 446
BsmBI	CGTCTC	3 cut(s)	184, 241, 426
BsmFI	GGGAC	1 cut(s)	280
BsmI	GAATGC	1 cut(s)	883
Bso31I	GGTCTC	1 cut(s)	397
Bsp143I	GATC	4 cut(s)	67, 336, 360, 894
Bsp1720I	GCTNAGC	1 cut(s)	666
Bsp19I	CCATGG	1 cut(s)	387
BspCNI	CTCAG	1 cut(s)	826
BspFNI	CGCG	4 cut(s)	231, 252, 276, 309
BspHI	TCATGA	1 cut(s)	99
BspMAI	CTGCAG	1 cut(s)	534
BspPI	GGATC	1 cut(s)	902
BspT107I	GGYRCC	4 cut(s)	342, 351, 415, 955
BspTNI	GGTCTC	1 cut(s)	397
BsrDI	GCAATG	1 cut(s)	399
BsrFI	RCCGGY	4 cut(s)	191, 224, 345, 762
BssAI	RCCGGY	4 cut(s)	191, 224, 345, 762
BssECI	CCNNGG	7 cut(s)	45, 216, 307, 387, 471, 590, 860
BssMI	GATC	4 cut(s)	67, 336, 360, 894
BssNI	GRCGYC	4 cut(s)	96, 343, 830, 956
BssT1I	CCWWGG	4 cut(s)	45, 387, 471, 860
Bst2UI	CCWGG	3 cut(s)	167, 217, 747
Bst4CI	ACNGT	2 cut(s)	37, 457
Bst6I	CTCTTC	2 cut(s)	371, 1085
BstACI	GRCGYC	4 cut(s)	96, 343, 830, 956
BstC8I	GCNNGC	2 cut(s)	193, 741
BstDEI	CTNAG	6 cut(s)	567, 666, 834, 867, 998, 1068
BstDSI	CCRYGG	2 cut(s)	307, 387
BstEII	GGTNACC	1 cut(s)	1099
BstF5I	GGATG	3 cut(s)	324, 949, 1038
BstFNI	CGCG	4 cut(s)	231, 252, 276, 309
BstH2I	RGCGCY	2 cut(s)	346, 959
BstHHI	GCGC	4 cut(s)	233, 278, 345, 958
BstKTI	GATC	4 cut(s)	70, 339, 363, 897
BstMAI	GTCTC	5 cut(s)	184, 241, 397, 426, 446
BstMBI	GATC	4 cut(s)	67, 336, 360, 894
BstMCI	CGRYCG	2 cut(s)	229, 590
BstNI	CCWGG	3 cut(s)	167, 217, 747
BstNSI	RCATGY	1 cut(s)	304
BstPI	GGTNACC	1 cut(s)	1099
BstSCI	CCNGG	7 cut(s)	165, 215, 256, 278, 589, 694, 745
BstSFI	CTRYAG	1 cut(s)	530
BstUI	CGCG	4 cut(s)	231, 252, 276, 309
BstV1I	GCAGC	5 cut(s)	26, 391, 516, 544, 666
BstV2I	GAAGAC	1 cut(s)	512
BstX2I	RGATCY	1 cut(s)	336
BstYI	RGATCY	1 cut(s)	336
BstZI	CGGCCG	2 cut(s)	226, 587
BsuI	GTATCC	1 cut(s)	254
BtgI	CCRYGG	2 cut(s)	307, 387
BtsCI	GGATG	3 cut(s)	324, 949, 1038
BtsIMutI	CAGTG	1 cut(s)	487
Cac8I	GCNNGC	2 cut(s)	193, 741
CciI	TCATGA	1 cut(s)	99
CfoI	GCGC	4 cut(s)	233, 278, 345, 958
Cfr10I	RCCGGY	4 cut(s)	191, 224, 345, 762
Cfr13I	GGNCC	3 cut(s)	267, 635, 777
Cfr42I	CCGCGG	1 cut(s)	310
CseI	GACGC	2 cut(s)	396, 819
Csp6I	GTAC	3 cut(s)	382, 649, 1012
CviAII	CATG	6 cut(s)	58, 100, 301, 388, 430, 994
CviQI	GTAC	3 cut(s)	382, 649, 1012
DdeI	CTNAG	6 cut(s)	567, 666, 834, 867, 998, 1068
DinI	GGCGCC	2 cut(s)	344, 957
DpnI	GATC	4 cut(s)	69, 338, 362, 896
DpnII	GATC	4 cut(s)	67, 336, 360, 894
DriI	GACNNNNNGTC	1 cut(s)	829
EaeI	YGGCCR	7 cut(s)	3, 60, 193, 226, 396, 587, 760
EagI	CGGCCG	2 cut(s)	226, 587
Eam1104I	CTCTTC	2 cut(s)	371, 1085
Eam1105I	GACNNNNNGTC	1 cut(s)	829
EarI	CTCTTC	2 cut(s)	371, 1085
EciI	GGCGGA	4 cut(s)	11, 196, 276, 327
EclXI	CGGCCG	2 cut(s)	226, 587
Eco130I	CCWWGG	4 cut(s)	45, 387, 471, 860
Eco147I	AGGCCT	3 cut(s)	107, 170, 931
Eco31I	GGTCTC	1 cut(s)	397
Eco32I	GATATC	2 cut(s)	124, 706
Eco47I	GGWCC	3 cut(s)	267, 635, 777
Eco52I	CGGCCG	2 cut(s)	226, 587
Eco57I	CTGAAG	1 cut(s)	755
Eco91I	GGTNACC	1 cut(s)	1099
EcoO109I	RGGNCCY	2 cut(s)	267, 635
EcoO65I	GGTNACC	1 cut(s)	1099
EcoRI	GAATTC	1 cut(s)	676
EcoRII	CCWGG	3 cut(s)	165, 215, 745
EcoRV	GATATC	2 cut(s)	124, 706
EcoT14I	CCWWGG	4 cut(s)	45, 387, 471, 860
EgeI	GGCGCC	2 cut(s)	344, 957
EheI	GGCGCC	2 cut(s)	344, 957
ErhI	CCWWGG	4 cut(s)	45, 387, 471, 860
Esp3I	CGTCTC	3 cut(s)	184, 241, 426
FaeI	CATG	6 cut(s)	61, 103, 304, 391, 433, 997
FaiI	YATR	9 cut(s)	59, 101, 302, 389, 431, 549, 813, 852, 995
FaqI	GGGAC	1 cut(s)	280
FatI	CATG	6 cut(s)	57, 99, 300, 387, 429, 993
FauI	CCCGC	1 cut(s)	257
FokI	GGATG	3 cut(s)	331, 956, 1045
FseI	GGCCGGCC	1 cut(s)	195
FspBI	CTAG	3 cut(s)	435, 861, 891
GlaI	GCGC	4 cut(s)	232, 277, 344, 957
GsuI	CTGGAG	1 cut(s)	534
HaeII	RGCGCY	2 cut(s)	346, 959
HapII	CCGG	8 cut(s)	192, 225, 258, 279, 346, 590, 696, 763
HgaI	GACGC	2 cut(s)	396, 819
HhaI	GCGC	4 cut(s)	233, 278, 345, 958
Hin1I	GRCGYC	4 cut(s)	96, 343, 830, 956
Hin1II	CATG	6 cut(s)	61, 103, 304, 391, 433, 997
Hin6I	GCGC	4 cut(s)	231, 276, 343, 956
HinP1I	GCGC	4 cut(s)	231, 276, 343, 956
HindIII	AAGCTT	1 cut(s)	668
HinfI	GANTC	4 cut(s)	212, 485, 583, 803
HpaII	CCGG	8 cut(s)	192, 225, 258, 279, 346, 590, 696, 763
HphI	GGTGA	3 cut(s)	25, 121, 886
Hpy166II	GTNNAC	3 cut(s)	139, 370, 649
Hpy188I	TCNGA	5 cut(s)	116, 330, 642, 835, 907
Hpy188III	TCNNGA	7 cut(s)	100, 295, 451, 461, 513, 775, 949
Hpy8I	GTNNAC	3 cut(s)	139, 370, 649
Hpy99I	CGWCG	5 cut(s)	14, 98, 412, 415, 911
HpyCH4III	ACNGT	2 cut(s)	37, 457
HpyCH4IV	ACGT	2 cut(s)	96, 366
HpyCH4V	TGCA	2 cut(s)	532, 916
HpyF3I	CTNAG	6 cut(s)	567, 666, 834, 867, 998, 1068
HpySE526I	ACGT	2 cut(s)	96, 366
Hsp92I	GRCGYC	4 cut(s)	96, 343, 830, 956
Hsp92II	CATG	6 cut(s)	61, 103, 304, 391, 433, 997
HspAI	GCGC	4 cut(s)	231, 276, 343, 956
KasI	GGCGCC	2 cut(s)	342, 955
KflI	GGGWCCC	1 cut(s)	267
KroI	GCCGGC	1 cut(s)	191
KroNI	GCCGGC	1 cut(s)	193
KspI	CCGCGG	1 cut(s)	310
Kzo9I	GATC	4 cut(s)	67, 336, 360, 894
LmnI	GCTCC	5 cut(s)	287, 331, 515, 542, 748
Lsp1109I	GCAGC	5 cut(s)	26, 391, 516, 544, 666
LweI	GCATC	2 cut(s)	544, 763
MaeI	CTAG	3 cut(s)	435, 861, 891
MaeII	ACGT	2 cut(s)	96, 366
MaeIII	GTNAC	5 cut(s)	31, 127, 440, 482, 1099
MalI	GATC	4 cut(s)	69, 338, 362, 896
MboI	GATC	4 cut(s)	67, 336, 360, 894
MboII	GAAGA	8 cut(s)	388, 517, 850, 853, 976, 979, 991, 1102
MflI	RGATCY	1 cut(s)	336
MlsI	TGGCCA	1 cut(s)	62
MluCI	AATT	3 cut(s)	464, 676, 727
MluNI	TGGCCA	1 cut(s)	62
Mly113I	GGCGCC	2 cut(s)	343, 956
MlyI	GAGTC	3 cut(s)	221, 479, 797
MmeI	TCCRAC	4 cut(s)	139, 168, 353, 930
Mox20I	TGGCCA	1 cut(s)	62
MroNI	GCCGGC	1 cut(s)	191
MscI	TGGCCA	1 cut(s)	62
MseI	TTAA	1 cut(s)	936
MslI	CAYNNNNRTG	1 cut(s)	713
Msp20I	TGGCCA	1 cut(s)	62
MspA1I	CMGCKG	2 cut(s)	17, 309
MspI	CCGG	8 cut(s)	192, 225, 258, 279, 346, 590, 696, 763
MspR9I	CCNGG	7 cut(s)	167, 217, 258, 280, 591, 696, 747
Mva1269I	GAATGC	1 cut(s)	883
MvaI	CCWGG	3 cut(s)	167, 217, 747
MvnI	CGCG	4 cut(s)	231, 252, 276, 309
NaeI	GCCGGC	1 cut(s)	193
NarI	GGCGCC	2 cut(s)	343, 956
NciI	CCSGG	4 cut(s)	258, 280, 591, 696
NcoI	CCATGG	1 cut(s)	387
NdeII	GATC	4 cut(s)	67, 336, 360, 894
NgoMIV	GCCGGC	1 cut(s)	191
NlaIII	CATG	6 cut(s)	61, 103, 304, 391, 433, 997
NmeAIII	GCCGAG	4 cut(s)	235, 374, 517, 583
NmuCI	GTSAC	4 cut(s)	31, 127, 440, 482
NspI	RCATGY	1 cut(s)	304
PagI	TCATGA	1 cut(s)	99
PceI	AGGCCT	3 cut(s)	107, 170, 931
PciI	ACATGT	1 cut(s)	300
PcsI	WCGNNNNNNNCGW	3 cut(s)	132, 416, 1080
PctI	GAATGC	1 cut(s)	883
PdiI	GCCGGC	1 cut(s)	193
PfeI	GAWTC	1 cut(s)	583
Pfl23II	CGTACG	1 cut(s)	1011
PflFI	GACNNNGTC	1 cut(s)	781
PflMI	CCANNNNNTGG	2 cut(s)	46, 339
PleI	GAGTC	3 cut(s)	220, 479, 797
PluTI	GGCGCC	2 cut(s)	346, 959
PpsI	GAGTC	3 cut(s)	220, 479, 797
PpuMI	RGGWCCY	2 cut(s)	267, 635
PscI	ACATGT	1 cut(s)	300
Psp5II	RGGWCCY	2 cut(s)	267, 635
Psp6I	CCWGG	3 cut(s)	165, 215, 745
PspEI	GGTNACC	1 cut(s)	1099
PspGI	CCWGG	3 cut(s)	165, 215, 745
PspLI	CGTACG	1 cut(s)	1011
PspPI	GGNCC	3 cut(s)	267, 635, 777
PspPPI	RGGWCCY	2 cut(s)	267, 635
PsrI	GAACNNNNNNTAC	2 cut(s)	602, 634
PstI	CTGCAG	1 cut(s)	534
PsuI	RGATCY	1 cut(s)	336
PsyI	GACNNNGTC	1 cut(s)	781
PvuII	CAGCTG	1 cut(s)	17
RigI	GGCCGGCC	1 cut(s)	195
RsaI	GTAC	3 cut(s)	383, 650, 1013
RsaNI	GTAC	3 cut(s)	382, 649, 1012
RseI	CAYNNNNRTG	1 cut(s)	713
SacII	CCGCGG	1 cut(s)	310
SaqAI	TTAA	1 cut(s)	936
Sau3AI	GATC	4 cut(s)	67, 336, 360, 894
Sau96I	GGNCC	3 cut(s)	267, 635, 777
SchI	GAGTC	3 cut(s)	221, 479, 797
ScrFI	CCNGG	7 cut(s)	167, 217, 258, 280, 591, 696, 747
SfaNI	GCATC	2 cut(s)	544, 763
SfcI	CTRYAG	1 cut(s)	530
SfoI	GGCGCC	2 cut(s)	344, 957
Sfr303I	CCGCGG	1 cut(s)	310
SgrAI	CRCCGGYG	1 cut(s)	345
SgrBI	CCGCGG	1 cut(s)	310
SinI	GGWCC	3 cut(s)	267, 635, 777
SmiMI	CAYNNNNRTG	1 cut(s)	713
SmlI	CTYRAG	1 cut(s)	1061
SmoI	CTYRAG	1 cut(s)	1061
Sse9I	AATT	3 cut(s)	464, 676, 727
SseBI	AGGCCT	3 cut(s)	107, 170, 931
SspDI	GGCGCC	2 cut(s)	342, 955
SspMI	CTAG	3 cut(s)	435, 861, 891
StuI	AGGCCT	3 cut(s)	107, 170, 931
StyD4I	CCNGG	7 cut(s)	165, 215, 256, 278, 589, 694, 745
StyI	CCWWGG	4 cut(s)	45, 387, 471, 860
TaaI	ACNGT	2 cut(s)	37, 457
TaiI	ACGT	2 cut(s)	99, 369
TaqI	TCGA	5 cut(s)	450, 581, 801, 822, 1083
TasI	AATT	3 cut(s)	464, 676, 727
TauI	GCSGC	6 cut(s)	8, 165, 231, 309, 312, 618
TfiI	GAWTC	1 cut(s)	583
Tru1I	TTAA	1 cut(s)	936
Tru9I	TTAA	1 cut(s)	936
TscAI	CASTG	1 cut(s)	487
TseFI	GTSAC	4 cut(s)	31, 127, 440, 482
TseI	GCWGC	5 cut(s)	14, 404, 529, 532, 654
Tsp45I	GTSAC	4 cut(s)	31, 127, 440, 482
TspDTI	ATGAA	1 cut(s)	116
TspRI	CASTG	1 cut(s)	487
Tth111I	GACNNNGTC	1 cut(s)	781
Van91I	CCANNNNNTGG	2 cut(s)	46, 339
VpaK11BI	GGWCC	3 cut(s)	267, 635, 777
XapI	RAATTY	1 cut(s)	676
XceI	RCATGY	1 cut(s)	304
XmaJI	CCTAGG	1 cut(s)	860
XspI	CTAG	3 cut(s)	435, 861, 891
ZraI	GACGTC	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.