Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000642.1

Orthogroup ID

OG0003533

Physical Location & Seq

Genomic Coordinates Forward (+)

199351 .. 200565

Gene Structure 1215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000642.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

atgaggaaccgccggtacatcaaccgcaagggcccgctcattgtttacggcaccgagggggctaagctcgtcaatgccttcaggaacattcccggagtcgatatcatcaatgtggagaggctcaatctgctgaagctcgcacctggtggccatctaggccggtttgttatctggaccaagtgtgcttttgagaagctggactcgatttacgggtcctttgataagccttccgagaagaagaagggctatgtgctgcccagggctaagatggtcaatgctgaccttgctaggattatcaactccgatgaggttcagtctgttgttaggcccatcaagagggaggtgaagagggcaccactgaagaagaacccgctcaagaatctcaacaccatgctcaggcttaacccgtatgctaagactgccaagagaatggcgctcttggctgaggagcagaggcttaagtccaagaaggagaagctcgacaggaagaggaagcccatttcaaaggaggaagcttctaccatcaaggcagctggcaaagcatggtaccaaacgatgatctctgacagtgattacaccgagtttgacgtcttccagaagtggcttggtgtatcccagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0030312 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042221 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribos_L4_asso_C Ribosomal_L4

Protein Analysis

206

Amino Acids

23.63

Weight (kDa)

10.2

Isoelectric Point (pI)

31.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003533)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09630 AT3G09630 AT5G02870 AT5G02870
fragaria_vesca	FvH4_4g07470 FvH4_6g15170 FvH4_6g15170 FvH4_6g15170
malus_domestica	MD12G1126000.v1.1 MD16G1251600.v1.1
prunus_persica	Prupe.1G078100_v2.0.a1 Prupe.1G078100_v2.0.a1 Prupe.6G242600_v2.0.a1
pyrus_communis	pycom04g10060 pycom12g12420 pycom16g21150
rosa_chinensis	RchiOBHm_Chr3g0468471 RchiOBHm_Chr6g0270851
rosa_laevigata	RLG00000013765 RLG00000024426
rosa_multiflora	Rmu_sc0000642.1_g000029 Rmu_sc0008735.1_g000002 Rmu_sc0008735.1_g000003
rosa_roxburghii	Rroxscaffold_6G00412730 Rroxscaffold_7G00197580
rosa_rugosa	Rorug03G0095700 Rorug06G0056900
rosa_samantha	Rh3AG143500 Rh3BG166000 Rh6AG176200 Rh6BG179400 Rh6CG175600 Rh6DG167900
rosa_wichuraiana	Rw3G013590 Rw6G015010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	591
Acc65I	GGTACC	1 cut(s)	546
AccB1I	GGYRCC	3 cut(s)	50, 352, 546
AccBSI	CCGCTC	2 cut(s)	37, 373
AciI	CCGC	4 cut(s)	10, 25, 35, 371
AcoI	YGGCCR	1 cut(s)	148
AcuI	CTGAAG	3 cut(s)	64, 152, 380
AcyI	GRCGYC	1 cut(s)	588
AdeI	CACNNNGTG	1 cut(s)	146
AfaI	GTAC	2 cut(s)	17, 548
AfiI	CCNNNNNNNGG	2 cut(s)	336, 396
AflII	CTTAAG	1 cut(s)	458
AgsI	TTSAA	1 cut(s)	504
AjnI	CCWGG	2 cut(s)	142, 257
AluBI	AGCT	6 cut(s)	67, 136, 196, 478, 515, 533
AluI	AGCT	6 cut(s)	67, 136, 196, 478, 515, 533
AoxI	GGCC	4 cut(s)	31, 148, 157, 326
ApaI	GGGCCC	1 cut(s)	35
ApeKI	GCWGC	2 cut(s)	253, 530
Asp718I	GGTACC	1 cut(s)	546
AspLEI	GCGC	1 cut(s)	436
AspS9I	GGNCC	5 cut(s)	31, 32, 174, 213, 327
AsuC2I	CCSGG	1 cut(s)	93
AsuHPI	GGTGA	1 cut(s)	355
AvaII	GGWCC	2 cut(s)	174, 213
BaeGI	GKGCMC	2 cut(s)	35, 355
BalI	TGGCCA	1 cut(s)	150
BanI	GGYRCC	3 cut(s)	50, 352, 546
BanII	GRGCYC	1 cut(s)	35
BbsI	GAAGAC	1 cut(s)	583
BbvCI	CCTCAGC	1 cut(s)	444
BbvI	GCAGC	2 cut(s)	240, 542
BccI	CCATC	4 cut(s)	159, 262, 338, 530
BceAI	ACGGC	1 cut(s)	64
BciT130I	CCWGG	2 cut(s)	144, 259
BcnI	CCSGG	1 cut(s)	93
BfaI	CTAG	2 cut(s)	155, 288
BfoI	RGCGCY	1 cut(s)	437
BfrI	CTTAAG	1 cut(s)	458
BglI	GCCNNNNNGGC	1 cut(s)	156
BisI	GCNGC	2 cut(s)	254, 531
BlpI	GCTNAGC	1 cut(s)	63
BlsI	GCNGC	2 cut(s)	255, 532
Bme1390I	CCNGG	3 cut(s)	93, 144, 259
Bme18I	GGWCC	2 cut(s)	174, 213
BmgT120I	GGNCC	5 cut(s)	31, 32, 174, 213, 327
BmiI	GGNNCC	6 cut(s)	8, 33, 52, 214, 354, 548
BmrFI	CCNGG	3 cut(s)	93, 144, 259
BmrI	ACTGGG	1 cut(s)	610
BmuI	ACTGGG	1 cut(s)	610
BpiI	GAAGAC	1 cut(s)	583
Bpu10I	CCTNAGC	2 cut(s)	395, 444
Bpu1102I	GCTNAGC	1 cut(s)	63
BpuEI	CTTGAG	1 cut(s)	359
BpuMI	CCSGG	1 cut(s)	93
BsaHI	GRCGYC	1 cut(s)	588
BsaJI	CCNNGG	3 cut(s)	54, 257, 258
Bsc4I	CCNNNNNNNGG	2 cut(s)	336, 396
Bse118I	RCCGGY	2 cut(s)	12, 159
Bse1I	ACTGG	1 cut(s)	616
BseBI	CCWGG	2 cut(s)	144, 259
BseDI	CCNNGG	3 cut(s)	54, 257, 258
BseLI	CCNNNNNNNGG	2 cut(s)	336, 396
BseMII	CTCAG	2 cut(s)	409, 435
BseNI	ACTGG	1 cut(s)	616
BseRI	GAGGAG	1 cut(s)	461
BseSI	GKGCMC	2 cut(s)	35, 355
BseXI	GCAGC	2 cut(s)	240, 542
BshFI	GGCC	4 cut(s)	33, 150, 159, 328
BshNI	GGYRCC	3 cut(s)	50, 352, 546
BsiSI	CCGG	3 cut(s)	13, 93, 160
BslI	CCNNNNNNNGG	2 cut(s)	336, 396
BsnI	GGCC	4 cut(s)	33, 150, 159, 328
Bsp120I	GGGCCC	1 cut(s)	31
Bsp1286I	GDGCHC	2 cut(s)	35, 355
Bsp143I	GATC	1 cut(s)	558
Bsp1720I	GCTNAGC	1 cut(s)	63
BspACI	CCGC	4 cut(s)	10, 25, 35, 371
BspANI	GGCC	4 cut(s)	33, 150, 159, 328
BspCNI	CTCAG	2 cut(s)	408, 436
BspLI	GGNNCC	6 cut(s)	8, 33, 52, 214, 354, 548
BspT107I	GGYRCC	3 cut(s)	50, 352, 546
BspTI	CTTAAG	1 cut(s)	458
BsrBI	CCGCTC	2 cut(s)	37, 373
BsrFI	RCCGGY	2 cut(s)	12, 159
BsrI	ACTGG	1 cut(s)	616
BssAI	RCCGGY	2 cut(s)	12, 159
BssECI	CCNNGG	3 cut(s)	54, 257, 258
BssMI	GATC	1 cut(s)	558
BssNI	GRCGYC	1 cut(s)	588
Bst2UI	CCWGG	2 cut(s)	144, 259
Bst4CI	ACNGT	1 cut(s)	569
Bst6I	CTCTTC	2 cut(s)	341, 482
BstACI	GRCGYC	1 cut(s)	588
BstAFI	CTTAAG	1 cut(s)	458
BstC8I	GCNNGC	3 cut(s)	35, 138, 535
BstDEI	CTNAG	5 cut(s)	63, 264, 395, 414, 444
BstH2I	RGCGCY	1 cut(s)	437
BstHHI	GCGC	1 cut(s)	436
BstKTI	GATC	1 cut(s)	561
BstMBI	GATC	1 cut(s)	558
BstMWI	GCNNNNNNNGC	6 cut(s)	127, 156, 284, 419, 440, 539
BstNI	CCWGG	2 cut(s)	144, 259
BstSCI	CCNGG	3 cut(s)	91, 142, 257
BstSLI	GKGCMC	2 cut(s)	35, 355
BstV1I	GCAGC	2 cut(s)	240, 542
BstV2I	GAAGAC	1 cut(s)	583
BstXI	CCANNNNNNTGG	1 cut(s)	430
BsuRI	GGCC	4 cut(s)	33, 150, 159, 328
BtsIMutI	CAGTG	2 cut(s)	356, 574
Cac8I	GCNNGC	3 cut(s)	35, 138, 535
CfoI	GCGC	1 cut(s)	436
Cfr10I	RCCGGY	2 cut(s)	12, 159
Cfr13I	GGNCC	5 cut(s)	31, 32, 174, 213, 327
CsiI	ACCWGGT	1 cut(s)	142
Csp6I	GTAC	2 cut(s)	16, 547
CviAII	CATG	2 cut(s)	391, 543
CviQI	GTAC	2 cut(s)	16, 547
DdeI	CTNAG	5 cut(s)	63, 264, 395, 414, 444
DpnI	GATC	1 cut(s)	560
DpnII	GATC	1 cut(s)	558
DraIII	CACNNNGTG	1 cut(s)	146
EaeI	YGGCCR	1 cut(s)	148
Eam1104I	CTCTTC	2 cut(s)	341, 482
EarI	CTCTTC	2 cut(s)	341, 482
Eco24I	GRGCYC	1 cut(s)	35
Eco32I	GATATC	1 cut(s)	103
Eco47I	GGWCC	2 cut(s)	174, 213
Eco57I	CTGAAG	3 cut(s)	64, 152, 380
EcoO109I	RGGNCCY	2 cut(s)	31, 213
EcoRII	CCWGG	2 cut(s)	142, 257
EcoRV	GATATC	1 cut(s)	103
EcoT38I	GRGCYC	1 cut(s)	35
FaeI	CATG	2 cut(s)	394, 546
FaiI	YATR	4 cut(s)	249, 392, 411, 544
FatI	CATG	2 cut(s)	390, 542
FauI	CCCGC	2 cut(s)	42, 378
Fnu4HI	GCNGC	2 cut(s)	254, 531
FriOI	GRGCYC	1 cut(s)	35
Fsp4HI	GCNGC	2 cut(s)	254, 531
FspBI	CTAG	2 cut(s)	155, 288
GlaI	GCGC	1 cut(s)	435
GluI	GCNGC	2 cut(s)	254, 531
HaeII	RGCGCY	1 cut(s)	437
HaeIII	GGCC	4 cut(s)	33, 150, 159, 328
HapII	CCGG	3 cut(s)	13, 93, 160
HhaI	GCGC	1 cut(s)	436
Hin1I	GRCGYC	1 cut(s)	588
Hin1II	CATG	2 cut(s)	394, 546
Hin6I	GCGC	1 cut(s)	434
HinP1I	GCGC	1 cut(s)	434
HindIII	AAGCTT	1 cut(s)	513
HinfI	GANTC	3 cut(s)	96, 200, 379
HpaII	CCGG	3 cut(s)	13, 93, 160
HphI	GGTGA	1 cut(s)	355
Hpy166II	GTNNAC	1 cut(s)	46
Hpy188I	TCNGA	3 cut(s)	232, 304, 565
Hpy188III	TCNNGA	5 cut(s)	82, 172, 334, 376, 595
Hpy8I	GTNNAC	1 cut(s)	46
HpyAV	CCTTC	4 cut(s)	88, 235, 237, 463
HpyCH4III	ACNGT	1 cut(s)	569
HpyCH4IV	ACGT	1 cut(s)	588
HpyF10VI	GCNNNNNNNGC	6 cut(s)	127, 156, 284, 419, 440, 539
HpyF3I	CTNAG	5 cut(s)	63, 264, 395, 414, 444
HpySE526I	ACGT	1 cut(s)	588
Hsp92I	GRCGYC	1 cut(s)	588
Hsp92II	CATG	2 cut(s)	394, 546
HspAI	GCGC	1 cut(s)	434
KpnI	GGTACC	1 cut(s)	550
Kzo9I	GATC	1 cut(s)	558
LmnI	GCTCC	1 cut(s)	448
Lsp1109I	GCAGC	2 cut(s)	240, 542
MabI	ACCWGGT	1 cut(s)	142
MaeI	CTAG	2 cut(s)	155, 288
MaeII	ACGT	1 cut(s)	588
MalI	GATC	1 cut(s)	560
MbiI	CCGCTC	2 cut(s)	37, 373
MboI	GATC	1 cut(s)	558
MboII	GAAGA	7 cut(s)	247, 250, 358, 373, 376, 499, 583
MhlI	GDGCHC	2 cut(s)	35, 355
MlsI	TGGCCA	1 cut(s)	150
MluNI	TGGCCA	1 cut(s)	150
MlyI	GAGTC	2 cut(s)	105, 194
Mox20I	TGGCCA	1 cut(s)	150
MscI	TGGCCA	1 cut(s)	150
MseI	TTAA	2 cut(s)	402, 459
MslI	CAYNNNNRTG	1 cut(s)	110
Msp20I	TGGCCA	1 cut(s)	150
MspA1I	CMGCKG	1 cut(s)	533
MspCI	CTTAAG	1 cut(s)	458
MspI	CCGG	3 cut(s)	13, 93, 160
MspR9I	CCNGG	3 cut(s)	93, 144, 259
MvaI	CCWGG	2 cut(s)	144, 259
MwoI	GCNNNNNNNGC	6 cut(s)	127, 156, 284, 419, 440, 539
NciI	CCSGG	1 cut(s)	93
NdeII	GATC	1 cut(s)	558
NlaIII	CATG	2 cut(s)	394, 546
NlaIV	GGNNCC	6 cut(s)	8, 33, 52, 214, 354, 548
PasI	CCCWGGG	1 cut(s)	258
PfeI	GAWTC	1 cut(s)	379
PfoI	TCCNGGA	1 cut(s)	91
PkrI	GCNGC	2 cut(s)	255, 532
PleI	GAGTC	2 cut(s)	104, 194
PpsI	GAGTC	2 cut(s)	104, 194
PpuMI	RGGWCCY	1 cut(s)	213
Psp5II	RGGWCCY	1 cut(s)	213
Psp6I	CCWGG	2 cut(s)	142, 257
PspGI	CCWGG	2 cut(s)	142, 257
PspN4I	GGNNCC	6 cut(s)	8, 33, 52, 214, 354, 548
PspOMI	GGGCCC	1 cut(s)	31
PspPI	GGNCC	5 cut(s)	31, 32, 174, 213, 327
PspPPI	RGGWCCY	1 cut(s)	213
PsrI	GAACNNNNNNTAC	1 cut(s)	31
PvuII	CAGCTG	1 cut(s)	533
RsaI	GTAC	2 cut(s)	17, 548
RsaNI	GTAC	2 cut(s)	16, 547
RseI	CAYNNNNRTG	1 cut(s)	110
SaqAI	TTAA	2 cut(s)	402, 459
SatI	GCNGC	2 cut(s)	254, 531
Sau3AI	GATC	1 cut(s)	558
Sau96I	GGNCC	5 cut(s)	31, 32, 174, 213, 327
SchI	GAGTC	2 cut(s)	105, 194
ScrFI	CCNGG	3 cut(s)	93, 144, 259
SduI	GDGCHC	2 cut(s)	35, 355
SexAI	ACCWGGT	1 cut(s)	142
SfiI	GGCCNNNNNGGCC	1 cut(s)	156
SinI	GGWCC	2 cut(s)	174, 213
SmiMI	CAYNNNNRTG	1 cut(s)	110
SmlI	CTYRAG	2 cut(s)	374, 458
SmoI	CTYRAG	2 cut(s)	374, 458
SsiI	CCGC	4 cut(s)	10, 25, 35, 371
SspMI	CTAG	2 cut(s)	155, 288
StyD4I	CCNGG	3 cut(s)	91, 142, 257
TaaI	ACNGT	1 cut(s)	569
TaiI	ACGT	1 cut(s)	591
TaqI	TCGA	3 cut(s)	99, 203, 480
TfiI	GAWTC	1 cut(s)	379
Tru1I	TTAA	2 cut(s)	402, 459
Tru9I	TTAA	2 cut(s)	402, 459
TscAI	CASTG	2 cut(s)	363, 574
TseI	GCWGC	2 cut(s)	253, 530
TspRI	CASTG	2 cut(s)	363, 574
Vha464I	CTTAAG	1 cut(s)	458
VpaK11BI	GGWCC	2 cut(s)	174, 213
XcmI	CCANNNNNNNNNTGG	2 cut(s)	265, 602
XspI	CTAG	2 cut(s)	155, 288
ZraI	GACGTC	1 cut(s)	589

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.