Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008735.1

Orthogroup ID

OG0003533

Physical Location & Seq

Genomic Coordinates Reverse (-)

23803 .. 24522

Gene Structure 720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008735.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

atggccgccgtcgcagctgtccgccccctcgtcaccgtccaagccttggaaggcgacatggccaccgatcaatcccagaccgcccctctccccgacgtcatgaaggcttctatccgacccgatatcgtcaccttcgtccactccaacatctccaagaacagccgccaggcctacgccgtctccaagaaggccggccaccagacctccgccgagtcctggggaacaggccgcgccgtctcccgtatcccccgcgttcccggcggagggacccaccgcgccgggcagggagccttcgggaacatgtgccgcggcggaaggatgttcgctccgaccaagatctggcgccgctggcaccgcaagatcaacgtgaaccagaagaggtacgccatggtctcggccattgctgcgtcgtcggtgccgtctctggtcatggctaggggtcacaaaatcgagactgttcccgaattgcccttggtcatcagtgactctgccgagagcgtggagaagacttctggagctatcaaggtgctgcagcagattggagcttatgccgatgcggagaaggctaaggacagccattgcccttggtcatcagtgactctgccgagagcgtggagaagacttctggagctatcaaggtgctgcagcagattggagcttttgccgacgccgagaaggctaaggacagccattcgattcggccggggaaggggaagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0030312 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042221 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribos_L4_asso_C Ribosomal_L4

Protein Analysis

239

Amino Acids

26.09

Weight (kDa)

11.13

Isoelectric Point (pI)

48.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003533)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09630 AT3G09630 AT5G02870 AT5G02870
fragaria_vesca	FvH4_4g07470 FvH4_6g15170 FvH4_6g15170 FvH4_6g15170
malus_domestica	MD12G1126000.v1.1 MD16G1251600.v1.1
prunus_persica	Prupe.1G078100_v2.0.a1 Prupe.1G078100_v2.0.a1 Prupe.6G242600_v2.0.a1
pyrus_communis	pycom04g10060 pycom12g12420 pycom16g21150
rosa_chinensis	RchiOBHm_Chr3g0468471 RchiOBHm_Chr6g0270851
rosa_laevigata	RLG00000013765 RLG00000024426
rosa_multiflora	Rmu_sc0000642.1_g000029 Rmu_sc0008735.1_g000002 Rmu_sc0008735.1_g000003
rosa_roxburghii	Rroxscaffold_6G00412730 Rroxscaffold_7G00197580
rosa_rugosa	Rorug03G0095700 Rorug06G0056900
rosa_samantha	Rh3AG143500 Rh3BG166000 Rh6AG176200 Rh6BG179400 Rh6CG175600 Rh6DG167900
rosa_wichuraiana	Rw3G013590 Rw6G015010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	99
AccB1I	GGYRCC	3 cut(s)	342, 351, 415
AccB7I	CCANNNNNTGG	2 cut(s)	46, 339
AccII	CGCG	4 cut(s)	231, 252, 276, 309
AcoI	YGGCCR	5 cut(s)	3, 60, 193, 396, 700
AcyI	GRCGYC	3 cut(s)	96, 343, 668
AfaI	GTAC	1 cut(s)	383
AfiI	CCNNNNNNNGG	6 cut(s)	46, 216, 263, 264, 339, 709
AflIII	ACRYGT	1 cut(s)	300
AjnI	CCWGG	2 cut(s)	165, 215
AluBI	AGCT	5 cut(s)	17, 518, 545, 631, 658
AluI	AGCT	5 cut(s)	17, 518, 545, 631, 658
Alw26I	GTCTC	5 cut(s)	184, 241, 397, 426, 446
AoxI	GGCC	8 cut(s)	3, 60, 168, 189, 193, 226, 396, 700
ApeKI	GCWGC	6 cut(s)	14, 404, 529, 532, 642, 645
AspLEI	GCGC	3 cut(s)	233, 278, 345
AspS9I	GGNCC	1 cut(s)	267
AsuC2I	CCSGG	3 cut(s)	258, 280, 704
AsuHPI	GGTGA	2 cut(s)	25, 121
AvaII	GGWCC	1 cut(s)	267
BalI	TGGCCA	1 cut(s)	62
BanI	GGYRCC	3 cut(s)	342, 351, 415
BbsI	GAAGAC	2 cut(s)	512, 625
BbvI	GCAGC	6 cut(s)	26, 391, 516, 544, 629, 657
BceAI	ACGGC	3 cut(s)	161, 218, 403
BciT130I	CCWGG	2 cut(s)	167, 217
BciVI	GTATCC	1 cut(s)	254
BcnI	CCSGG	3 cut(s)	258, 280, 704
BcoDI	GTCTC	5 cut(s)	184, 241, 397, 426, 446
BfaI	CTAG	1 cut(s)	435
BfmI	CTRYAG	2 cut(s)	530, 643
BfoI	RGCGCY	1 cut(s)	346
BfuI	GTATCC	1 cut(s)	254
BglI	GCCNNNNNGGC	1 cut(s)	676
BglII	AGATCT	1 cut(s)	336
Bme1390I	CCNGG	5 cut(s)	167, 217, 258, 280, 704
Bme18I	GGWCC	1 cut(s)	267
BmgT120I	GGNCC	1 cut(s)	267
BmiI	GGNNCC	6 cut(s)	268, 269, 289, 344, 353, 417
BmrFI	CCNGG	5 cut(s)	167, 217, 258, 280, 704
BmsI	GCATC	1 cut(s)	544
BpiI	GAAGAC	2 cut(s)	512, 625
BpmI	CTGGAG	2 cut(s)	534, 647
Bpu10I	CCTNAGC	2 cut(s)	567, 680
BpuMI	CCSGG	3 cut(s)	258, 280, 704
BsaHI	GRCGYC	3 cut(s)	96, 343, 668
BsaI	GGTCTC	1 cut(s)	397
BsaJI	CCNNGG	7 cut(s)	45, 216, 307, 387, 471, 584, 703
BsaXI	ACNNNNNCTCC	4 cut(s)	164, 188, 194, 218
Bsc4I	CCNNNNNNNGG	6 cut(s)	46, 216, 263, 264, 339, 709
Bse118I	RCCGGY	1 cut(s)	191
Bse3DI	GCAATG	2 cut(s)	399, 577
BseBI	CCWGG	2 cut(s)	167, 217
BseDI	CCNNGG	7 cut(s)	45, 216, 307, 387, 471, 584, 703
BseGI	GGATG	1 cut(s)	324
BseLI	CCNNNNNNNGG	6 cut(s)	46, 216, 263, 264, 339, 709
BseMI	GCAATG	2 cut(s)	399, 577
BseX3I	CGGCCG	1 cut(s)	700
BseXI	GCAGC	6 cut(s)	26, 391, 516, 544, 629, 657
Bsh1236I	CGCG	4 cut(s)	231, 252, 276, 309
Bsh1285I	CGRYCG	1 cut(s)	703
BshFI	GGCC	8 cut(s)	5, 62, 170, 191, 195, 228, 398, 702
BshNI	GGYRCC	3 cut(s)	342, 351, 415
BsiEI	CGRYCG	1 cut(s)	703
BsiSI	CCGG	4 cut(s)	192, 258, 279, 703
BslFI	GGGAC	1 cut(s)	280
BslI	CCNNNNNNNGG	6 cut(s)	46, 216, 263, 264, 339, 709
BsmAI	GTCTC	5 cut(s)	184, 241, 397, 426, 446
BsmBI	CGTCTC	3 cut(s)	184, 241, 426
BsmFI	GGGAC	1 cut(s)	280
BsnI	GGCC	8 cut(s)	5, 62, 170, 191, 195, 228, 398, 702
Bso31I	GGTCTC	1 cut(s)	397
Bsp143I	GATC	3 cut(s)	67, 336, 360
Bsp19I	CCATGG	1 cut(s)	387
BspANI	GGCC	8 cut(s)	5, 62, 170, 191, 195, 228, 398, 702
BspFNI	CGCG	4 cut(s)	231, 252, 276, 309
BspHI	TCATGA	1 cut(s)	99
BspLI	GGNNCC	6 cut(s)	268, 269, 289, 344, 353, 417
BspMAI	CTGCAG	2 cut(s)	534, 647
BspT107I	GGYRCC	3 cut(s)	342, 351, 415
BspTNI	GGTCTC	1 cut(s)	397
BsrDI	GCAATG	2 cut(s)	399, 577
BsrFI	RCCGGY	1 cut(s)	191
BssAI	RCCGGY	1 cut(s)	191
BssECI	CCNNGG	7 cut(s)	45, 216, 307, 387, 471, 584, 703
BssMI	GATC	3 cut(s)	67, 336, 360
BssNI	GRCGYC	3 cut(s)	96, 343, 668
BssT1I	CCWWGG	4 cut(s)	45, 387, 471, 584
Bst2UI	CCWGG	2 cut(s)	167, 217
Bst4CI	ACNGT	2 cut(s)	37, 457
Bst6I	CTCTTC	1 cut(s)	371
BstACI	GRCGYC	3 cut(s)	96, 343, 668
BstC8I	GCNNGC	2 cut(s)	193, 350
BstDEI	CTNAG	2 cut(s)	567, 680
BstDSI	CCRYGG	2 cut(s)	307, 387
BstF5I	GGATG	1 cut(s)	324
BstFNI	CGCG	4 cut(s)	231, 252, 276, 309
BstH2I	RGCGCY	1 cut(s)	346
BstHHI	GCGC	3 cut(s)	233, 278, 345
BstKTI	GATC	3 cut(s)	70, 339, 363
BstMAI	GTCTC	5 cut(s)	184, 241, 397, 426, 446
BstMBI	GATC	3 cut(s)	67, 336, 360
BstMCI	CGRYCG	1 cut(s)	703
BstMWI	GCNNNNNNNGC	8 cut(s)	11, 14, 258, 349, 354, 404, 563, 676
BstNI	CCWGG	2 cut(s)	167, 217
BstNSI	RCATGY	1 cut(s)	304
BstSCI	CCNGG	5 cut(s)	165, 215, 256, 278, 702
BstSFI	CTRYAG	2 cut(s)	530, 643
BstUI	CGCG	4 cut(s)	231, 252, 276, 309
BstV1I	GCAGC	6 cut(s)	26, 391, 516, 544, 629, 657
BstV2I	GAAGAC	2 cut(s)	512, 625
BstX2I	RGATCY	1 cut(s)	336
BstYI	RGATCY	1 cut(s)	336
BstZI	CGGCCG	1 cut(s)	700
BsuI	GTATCC	1 cut(s)	254
BsuRI	GGCC	8 cut(s)	5, 62, 170, 191, 195, 228, 398, 702
BtgI	CCRYGG	2 cut(s)	307, 387
BtsCI	GGATG	1 cut(s)	324
BtsIMutI	CAGTG	2 cut(s)	487, 600
Cac8I	GCNNGC	2 cut(s)	193, 350
CciI	TCATGA	1 cut(s)	99
CfoI	GCGC	3 cut(s)	233, 278, 345
Cfr10I	RCCGGY	1 cut(s)	191
Cfr13I	GGNCC	1 cut(s)	267
Cfr42I	CCGCGG	1 cut(s)	310
CseI	GACGC	2 cut(s)	396, 676
Csp6I	GTAC	1 cut(s)	382
CviAII	CATG	5 cut(s)	58, 100, 301, 388, 430
CviQI	GTAC	1 cut(s)	382
DdeI	CTNAG	2 cut(s)	567, 680
DinI	GGCGCC	1 cut(s)	344
DpnI	GATC	3 cut(s)	69, 338, 362
DpnII	GATC	3 cut(s)	67, 336, 360
EaeI	YGGCCR	5 cut(s)	3, 60, 193, 396, 700
EagI	CGGCCG	1 cut(s)	700
Eam1104I	CTCTTC	1 cut(s)	371
EarI	CTCTTC	1 cut(s)	371
EciI	GGCGGA	4 cut(s)	11, 196, 276, 327
EclXI	CGGCCG	1 cut(s)	700
Eco130I	CCWWGG	4 cut(s)	45, 387, 471, 584
Eco147I	AGGCCT	1 cut(s)	170
Eco31I	GGTCTC	1 cut(s)	397
Eco32I	GATATC	1 cut(s)	124
Eco47I	GGWCC	1 cut(s)	267
Eco52I	CGGCCG	1 cut(s)	700
EcoO109I	RGGNCCY	1 cut(s)	267
EcoRII	CCWGG	2 cut(s)	165, 215
EcoRV	GATATC	1 cut(s)	124
EcoT14I	CCWWGG	4 cut(s)	45, 387, 471, 584
EgeI	GGCGCC	1 cut(s)	344
EheI	GGCGCC	1 cut(s)	344
ErhI	CCWWGG	4 cut(s)	45, 387, 471, 584
Esp3I	CGTCTC	3 cut(s)	184, 241, 426
FaeI	CATG	5 cut(s)	61, 103, 304, 391, 433
FaiI	YATR	6 cut(s)	59, 101, 302, 389, 431, 549
FaqI	GGGAC	1 cut(s)	280
FatI	CATG	5 cut(s)	57, 99, 300, 387, 429
FauI	CCCGC	1 cut(s)	257
FokI	GGATG	1 cut(s)	331
FseI	GGCCGGCC	1 cut(s)	195
FspBI	CTAG	1 cut(s)	435
GlaI	GCGC	3 cut(s)	232, 277, 344
GsuI	CTGGAG	2 cut(s)	534, 647
HaeII	RGCGCY	1 cut(s)	346
HaeIII	GGCC	8 cut(s)	5, 62, 170, 191, 195, 228, 398, 702
HapII	CCGG	4 cut(s)	192, 258, 279, 703
HgaI	GACGC	2 cut(s)	396, 676
HhaI	GCGC	3 cut(s)	233, 278, 345
Hin1I	GRCGYC	3 cut(s)	96, 343, 668
Hin1II	CATG	5 cut(s)	61, 103, 304, 391, 433
Hin6I	GCGC	3 cut(s)	231, 276, 343
HinP1I	GCGC	3 cut(s)	231, 276, 343
HinfI	GANTC	4 cut(s)	212, 485, 598, 696
HpaII	CCGG	4 cut(s)	192, 258, 279, 703
HphI	GGTGA	2 cut(s)	25, 121
Hpy166II	GTNNAC	2 cut(s)	139, 370
Hpy188I	TCNGA	2 cut(s)	116, 330
Hpy188III	TCNNGA	6 cut(s)	100, 295, 451, 461, 513, 626
Hpy8I	GTNNAC	2 cut(s)	139, 370
Hpy99I	CGWCG	5 cut(s)	14, 98, 412, 415, 670
HpyAV	CCTTC	9 cut(s)	44, 97, 142, 181, 301, 309, 556, 669, 702
HpyCH4III	ACNGT	2 cut(s)	37, 457
HpyCH4IV	ACGT	2 cut(s)	96, 366
HpyCH4V	TGCA	2 cut(s)	532, 645
HpyF10VI	GCNNNNNNNGC	8 cut(s)	11, 14, 258, 349, 354, 404, 563, 676
HpyF3I	CTNAG	2 cut(s)	567, 680
HpySE526I	ACGT	2 cut(s)	96, 366
Hsp92I	GRCGYC	3 cut(s)	96, 343, 668
Hsp92II	CATG	5 cut(s)	61, 103, 304, 391, 433
HspAI	GCGC	3 cut(s)	231, 276, 343
KasI	GGCGCC	1 cut(s)	342
KflI	GGGWCCC	1 cut(s)	267
KroI	GCCGGC	1 cut(s)	191
KroNI	GCCGGC	1 cut(s)	193
KspI	CCGCGG	1 cut(s)	310
Kzo9I	GATC	3 cut(s)	67, 336, 360
LmnI	GCTCC	6 cut(s)	287, 331, 515, 542, 628, 655
Lsp1109I	GCAGC	6 cut(s)	26, 391, 516, 544, 629, 657
LweI	GCATC	1 cut(s)	544
MaeI	CTAG	1 cut(s)	435
MaeII	ACGT	2 cut(s)	96, 366
MaeIII	GTNAC	5 cut(s)	31, 127, 440, 482, 595
MalI	GATC	3 cut(s)	69, 338, 362
MboI	GATC	3 cut(s)	67, 336, 360
MboII	GAAGA	3 cut(s)	388, 517, 630
MflI	RGATCY	1 cut(s)	336
MlsI	TGGCCA	1 cut(s)	62
MluCI	AATT	1 cut(s)	464
MluNI	TGGCCA	1 cut(s)	62
Mly113I	GGCGCC	1 cut(s)	343
MlyI	GAGTC	3 cut(s)	221, 479, 592
MmeI	TCCRAC	3 cut(s)	139, 168, 353
MnlI	CCTC	5 cut(s)	38, 96, 214, 257, 372
Mox20I	TGGCCA	1 cut(s)	62
MroNI	GCCGGC	1 cut(s)	191
MscI	TGGCCA	1 cut(s)	62
Msp20I	TGGCCA	1 cut(s)	62
MspA1I	CMGCKG	3 cut(s)	17, 309, 348
MspI	CCGG	4 cut(s)	192, 258, 279, 703
MspR9I	CCNGG	5 cut(s)	167, 217, 258, 280, 704
MvaI	CCWGG	2 cut(s)	167, 217
MvnI	CGCG	4 cut(s)	231, 252, 276, 309
MwoI	GCNNNNNNNGC	8 cut(s)	11, 14, 258, 349, 354, 404, 563, 676
NaeI	GCCGGC	1 cut(s)	193
NarI	GGCGCC	1 cut(s)	343
NciI	CCSGG	3 cut(s)	258, 280, 704
NcoI	CCATGG	1 cut(s)	387
NdeII	GATC	3 cut(s)	67, 336, 360
NgoMIV	GCCGGC	1 cut(s)	191
NlaIII	CATG	5 cut(s)	61, 103, 304, 391, 433
NlaIV	GGNNCC	6 cut(s)	268, 269, 289, 344, 353, 417
NmeAIII	GCCGAG	5 cut(s)	235, 374, 517, 630, 696
NmuCI	GTSAC	5 cut(s)	31, 127, 440, 482, 595
NspI	RCATGY	1 cut(s)	304
PagI	TCATGA	1 cut(s)	99
PceI	AGGCCT	1 cut(s)	170
PciI	ACATGT	1 cut(s)	300
PcsI	WCGNNNNNNNCGW	2 cut(s)	132, 416
PdiI	GCCGGC	1 cut(s)	193
PfeI	GAWTC	1 cut(s)	696
PflMI	CCANNNNNTGG	2 cut(s)	46, 339
PleI	GAGTC	3 cut(s)	220, 479, 592
PluTI	GGCGCC	1 cut(s)	346
PpsI	GAGTC	3 cut(s)	220, 479, 592
PpuMI	RGGWCCY	1 cut(s)	267
PscI	ACATGT	1 cut(s)	300
Psp5II	RGGWCCY	1 cut(s)	267
Psp6I	CCWGG	2 cut(s)	165, 215
PspGI	CCWGG	2 cut(s)	165, 215
PspN4I	GGNNCC	6 cut(s)	268, 269, 289, 344, 353, 417
PspPI	GGNCC	1 cut(s)	267
PspPPI	RGGWCCY	1 cut(s)	267
PstI	CTGCAG	2 cut(s)	534, 647
PsuI	RGATCY	1 cut(s)	336
PvuII	CAGCTG	1 cut(s)	17
RigI	GGCCGGCC	1 cut(s)	195
RsaI	GTAC	1 cut(s)	383
RsaNI	GTAC	1 cut(s)	382
SacII	CCGCGG	1 cut(s)	310
Sau3AI	GATC	3 cut(s)	67, 336, 360
Sau96I	GGNCC	1 cut(s)	267
SchI	GAGTC	3 cut(s)	221, 479, 592
ScrFI	CCNGG	5 cut(s)	167, 217, 258, 280, 704
SfaNI	GCATC	1 cut(s)	544
SfcI	CTRYAG	2 cut(s)	530, 643
SfoI	GGCGCC	1 cut(s)	344
Sfr303I	CCGCGG	1 cut(s)	310
SgrBI	CCGCGG	1 cut(s)	310
SinI	GGWCC	1 cut(s)	267
Sse9I	AATT	1 cut(s)	464
SseBI	AGGCCT	1 cut(s)	170
SspDI	GGCGCC	1 cut(s)	342
SspMI	CTAG	1 cut(s)	435
StuI	AGGCCT	1 cut(s)	170
StyD4I	CCNGG	5 cut(s)	165, 215, 256, 278, 702
StyI	CCWWGG	4 cut(s)	45, 387, 471, 584
TaaI	ACNGT	2 cut(s)	37, 457
TaiI	ACGT	2 cut(s)	99, 369
TaqI	TCGA	2 cut(s)	450, 694
TasI	AATT	1 cut(s)	464
TauI	GCSGC	6 cut(s)	8, 165, 231, 309, 312, 348
TfiI	GAWTC	1 cut(s)	696
TscAI	CASTG	2 cut(s)	487, 600
TseFI	GTSAC	5 cut(s)	31, 127, 440, 482, 595
TseI	GCWGC	6 cut(s)	14, 404, 529, 532, 642, 645
Tsp45I	GTSAC	5 cut(s)	31, 127, 440, 482, 595
TspDTI	ATGAA	1 cut(s)	116
TspRI	CASTG	2 cut(s)	487, 600
Van91I	CCANNNNNTGG	2 cut(s)	46, 339
VpaK11BI	GGWCC	1 cut(s)	267
XceI	RCATGY	1 cut(s)	304
XspI	CTAG	1 cut(s)	435
ZraI	GACGTC	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.