AT5G02870

60S ribosomal protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
657675 .. 659800
2126 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G02870.1

Sequence Viewer

Length: 1224 bp
ATGGTTGCCTCAGCCGCCGCACGACCTCTTGTCACCGTCCAAGGACTTGACGGTGACATGAGCACCGATCAATCCACCACCGTCACTTTACCAGACGTCATGACTGCTCCAGTTCGACCTGACATTGTCAACTTCGTCCACGCCCAAATCTCCAACAACAGCCGTCAGCCTTACGCAGTCTCCAAAAAGGCCGGTCACCAAACCTCCGCCGAGTCCTGGGGAACCGGAAGAGCCGTGTCACGTATCCCTCGTGTTCCTGGTGGTGGAACTCACCGTGCCGGTCAAGCAGCGTTCGGAAACATGTGTCGTGGTGGTCGTATGTTTGCTCCGACTAAGATCTGGAGACGCTGGCACCGTCGTGTCAATGTCAACATGAAGAGGCACGCGATTGTTTCTGCAATCGCTGCTACTGCTGTTCCAGCTCTTGTGATGGCTCGTGGTCACAAGATCGAGAATGTTCCTGAGATGCCTCTTGTTGTTAGCGACTCAGCTGAAGCTGTGGAGAAGACATCAGCTGCGATCAAGGTATTGAAGCAGATCGGTGCTTACGACGATGCGGAGAAAGCTAAGAACAGTATTGGAATTCGTCCTGGTAAAGGTAAAATGAGGAATCGTCGTTACATTTCTAGGAAAGGTCCTCTTGTTGTGTTTGGAACTGAAGGAGCCAAGATTGTGAAAGCTTTTAGGAATCTTCCTGGTGTTGAGCTTTGTCACGTTGAGAGGCTTAACTTGTTGAAATTAGCCCCTGGTGGTCACCTTGGTAGGTTTGTGATTTGGACTAAGTCTGCTTTTGAGAAGCTTGAATCTATCTATGGCTCGTTTGAGAAACCATCAGAGAAGAAGAAGGGTTACGTCTTGCCTCGTGCGAAGATGGTGAATGCTGATCTTGCTAGGATTATTAACTCCGATGAGGTACAGAGTGTGGTGAACCCGATTAAGGATGGTTCCAAGAGAGCGGTTCTGAAGAAGAATCCATTGAAGAACCTTAATGTGATGTTCAAGTTGAATCCTTATGCTAAGACCGCAAAGAGAATGTCTCTGTTGGCTGAAGCTTCAAGGGTTAAGGCTAAGAAGGAGAAGCTCGAGAAGAAGAGGAAAGTCGTCACTAAGGAGGAGGCCCAAGCGATCAAAGCAGCAGGCAAGGCTTGGTATCAGACTATGATTTCAGACAGTGACTACACCGAGTTCGATAACTTCACCAAGTGGCTTGGCGCTAGTCAGTAA

Protein Analysis

407

Amino Acids

44.72

Weight (kDa)

10.31

Isoelectric Point (pI)

36.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L4 PF00573 29 - 269 9.8e-37 Ribosomal protein L4/L1 family
Ribos_L4_asso_C PF14374 282 - 354 6.7e-29 60S ribosomal protein L4 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 99
AccB1I GGYRCC 1 cut(s) 351
AccBSI CCGCTC 1 cut(s) 956
AccII CGCG 1 cut(s) 386
AciI CCGC 6 cut(s) 15, 18, 207, 557, 956, 1023
AcsI RAATTY 1 cut(s) 582
AcuI CTGAAG 4 cut(s) 513, 678, 983, 1068
AcyI GRCGYC 1 cut(s) 96
AdeI CACNNNGTG 1 cut(s) 1203
AfaI GTAC 1 cut(s) 915
AfiI CCNNNNNNNGG 4 cut(s) 216, 263, 596, 937
AflIII ACRYGT 1 cut(s) 300
AgsI TTSAA 7 cut(s) 532, 736, 803, 979, 1000, 1006, 1056
AhdI GACNNNNNGTC 1 cut(s) 29
AjnI CCWGG 5 cut(s) 215, 256, 589, 694, 745
AleI CACNNNNGTG 1 cut(s) 357
Alw21I GWGCWC 1 cut(s) 65
Alw26I GTCTC 3 cut(s) 184, 337, 1041
Ama87I CYCGRG 1 cut(s) 1082
AoxI GGCC 2 cut(s) 189, 1116
ApeKI GCWGC 4 cut(s) 287, 404, 515, 1133
ApoI RAATTY 1 cut(s) 582
ArsI GACNNNNNNTTYG 2 cut(s) 1019, 1051
AspLEI GCGC 1 cut(s) 1214
AspS9I GGNCC 2 cut(s) 635, 1117
AsuHPI GGTGA 8 cut(s) 25, 65, 188, 263, 746, 886, 937, 1189
AvaI CYCGRG 1 cut(s) 1082
AvaII GGWCC 1 cut(s) 635
BanI GGYRCC 1 cut(s) 351
BarI GAAGNNNNNNTAC 2 cut(s) 833, 865
BauI CACGAG 3 cut(s) 249, 435, 861
BbsI GAAGAC 1 cut(s) 512
Bbv12I GWGCWC 1 cut(s) 65
BbvCI CCTCAGC 1 cut(s) 10
BbvI GCAGC 4 cut(s) 299, 391, 502, 1145
BccI CCATC 4 cut(s) 424, 838, 865, 935
BceAI ACGGC 2 cut(s) 147, 218
BciT130I CCWGG 5 cut(s) 217, 258, 591, 696, 747
BciVI GTATCC 1 cut(s) 254
BcoDI GTCTC 3 cut(s) 184, 337, 1041
BfaI CTAG 3 cut(s) 627, 891, 1215
BfoI RGCGCY 1 cut(s) 1215
BfuI GTATCC 1 cut(s) 254
BglII AGATCT 1 cut(s) 336
BisI GCNGC 6 cut(s) 15, 18, 288, 405, 516, 1134
BlsI GCNGC 6 cut(s) 16, 19, 289, 406, 517, 1135
Bme1390I CCNGG 5 cut(s) 217, 258, 591, 696, 747
Bme18I GGWCC 1 cut(s) 635
BmeRI GACNNNNNGTC 1 cut(s) 29
BmeT110I CYCGRG 1 cut(s) 1082
BmgT120I GGNCC 2 cut(s) 635, 1117
BmiI GGNNCC 4 cut(s) 223, 353, 664, 946
BmrFI CCNGG 5 cut(s) 217, 258, 591, 696, 747
BmsI GCATC 2 cut(s) 456, 544
BpiI GAAGAC 1 cut(s) 512
BplI GAGNNNNNCTC 2 cut(s) 1021, 1053
BpmI CTGGAG 2 cut(s) 93, 361
Bpu10I CCTNAGC 1 cut(s) 10
BsaAI YACGTR 1 cut(s) 242
BsaHI GRCGYC 1 cut(s) 96
BsaJI CCNNGG 4 cut(s) 40, 216, 745, 757
BsaWI WCCGGW 1 cut(s) 224
BsaXI ACNNNNNCTCC 4 cut(s) 164, 188, 194, 218
Bsc4I CCNNNNNNNGG 4 cut(s) 216, 263, 596, 937
Bse118I RCCGGY 2 cut(s) 191, 278
Bse1I ACTGG 1 cut(s) 110
BseBI CCWGG 5 cut(s) 217, 258, 591, 696, 747
BseDI CCNNGG 4 cut(s) 40, 216, 745, 757
BseGI GGATG 1 cut(s) 946
BseLI CCNNNNNNNGG 4 cut(s) 216, 263, 596, 937
BseMII CTCAG 3 cut(s) 24, 453, 501
BseNI ACTGG 1 cut(s) 110
BseRI GAGGAG 1 cut(s) 1127
BseXI GCAGC 4 cut(s) 299, 391, 502, 1145
Bsh1236I CGCG 1 cut(s) 386
BshFI GGCC 2 cut(s) 191, 1118
BshNI GGYRCC 1 cut(s) 351
BsiHKAI GWGCWC 1 cut(s) 65
BsiHKCI CYCGRG 1 cut(s) 1082
BsiSI CCGG 3 cut(s) 192, 225, 279
BslI CCNNNNNNNGG 4 cut(s) 216, 263, 596, 937
BsmAI GTCTC 3 cut(s) 184, 337, 1041
BsmBI CGTCTC 1 cut(s) 337
BsmI GAATGC 1 cut(s) 883
BsnI GGCC 2 cut(s) 191, 1118
BsoBI CYCGRG 1 cut(s) 1082
Bsp1286I GDGCHC 1 cut(s) 65
Bsp143I GATC 7 cut(s) 67, 336, 447, 519, 537, 883, 1125
BspACI CCGC 6 cut(s) 15, 18, 207, 557, 956, 1023
BspANI GGCC 2 cut(s) 191, 1118
BspCNI CTCAG 3 cut(s) 23, 454, 500
BspFNI CGCG 1 cut(s) 386
BspHI TCATGA 1 cut(s) 99
BspLI GGNNCC 4 cut(s) 223, 353, 664, 946
BspQI GCTCTTC 1 cut(s) 223
BspT107I GGYRCC 1 cut(s) 351
BsrBI CCGCTC 1 cut(s) 956
BsrFI RCCGGY 2 cut(s) 191, 278
BsrI ACTGG 1 cut(s) 110
BssAI RCCGGY 2 cut(s) 191, 278
BssECI CCNNGG 4 cut(s) 40, 216, 745, 757
BssMI GATC 7 cut(s) 67, 336, 447, 519, 537, 883, 1125
BssNI GRCGYC 1 cut(s) 96
BssSI CACGAG 3 cut(s) 249, 435, 861
BssT1I CCWWGG 2 cut(s) 40, 757
Bst2BI CACGAG 3 cut(s) 249, 435, 861
Bst2UI CCWGG 5 cut(s) 217, 258, 591, 696, 747
Bst4CI ACNGT 7 cut(s) 37, 53, 82, 275, 356, 575, 1172
Bst6I CTCTTC 3 cut(s) 223, 371, 1085
BstACI GRCGYC 1 cut(s) 96
BstAPI GCANNNNNTGC 1 cut(s) 404
BstBAI YACGTR 1 cut(s) 242
BstC8I GCNNGC 3 cut(s) 350, 384, 1138
BstDEI CTNAG 9 cut(s) 10, 333, 462, 487, 567, 780, 1017, 1068, 1107
BstEII GGTNACC 2 cut(s) 194, 752
BstENI CCTNNNNNAGG 1 cut(s) 594
BstF5I GGATG 1 cut(s) 946
BstFNI CGCG 1 cut(s) 386
BstH2I RGCGCY 1 cut(s) 1215
BstHHI GCGC 1 cut(s) 1214
BstKTI GATC 7 cut(s) 70, 339, 450, 522, 540, 886, 1128
BstMAI GTCTC 3 cut(s) 184, 337, 1041
BstMBI GATC 7 cut(s) 67, 336, 447, 519, 537, 883, 1125
BstNI CCWGG 5 cut(s) 217, 258, 591, 696, 747
BstNSI RCATGY 1 cut(s) 304
BstPI GGTNACC 2 cut(s) 194, 752
BstSCI CCNGG 5 cut(s) 215, 256, 589, 694, 745
BstUI CGCG 1 cut(s) 386
BstV1I GCAGC 4 cut(s) 299, 391, 502, 1145
BstV2I GAAGAC 1 cut(s) 512
BstX2I RGATCY 1 cut(s) 336
BstYI RGATCY 1 cut(s) 336
BsuI GTATCC 1 cut(s) 254
BsuRI GGCC 2 cut(s) 191, 1118
BtsCI GGATG 1 cut(s) 946
BtsIMutI CAGTG 1 cut(s) 1177
Cac8I GCNNGC 3 cut(s) 350, 384, 1138
CciI TCATGA 1 cut(s) 99
CfoI GCGC 1 cut(s) 1214
Cfr10I RCCGGY 2 cut(s) 191, 278
Cfr13I GGNCC 2 cut(s) 635, 1117
CseI GACGC 1 cut(s) 354
Csp6I GTAC 1 cut(s) 914
CviAII CATG 4 cut(s) 58, 100, 301, 373
CviQI GTAC 1 cut(s) 914
DdeI CTNAG 9 cut(s) 10, 333, 462, 487, 567, 780, 1017, 1068, 1107
DpnI GATC 7 cut(s) 69, 338, 449, 521, 539, 885, 1127
DpnII GATC 7 cut(s) 67, 336, 447, 519, 537, 883, 1125
DraIII CACNNNGTG 1 cut(s) 1203
DriI GACNNNNNGTC 1 cut(s) 29
Eam1104I CTCTTC 3 cut(s) 223, 371, 1085
Eam1105I GACNNNNNGTC 1 cut(s) 29
EarI CTCTTC 3 cut(s) 223, 371, 1085
EciI GGCGGA 1 cut(s) 196
Eco130I CCWWGG 2 cut(s) 40, 757
Eco47I GGWCC 1 cut(s) 635
Eco57I CTGAAG 4 cut(s) 513, 678, 983, 1068
Eco88I CYCGRG 1 cut(s) 1082
Eco91I GGTNACC 2 cut(s) 194, 752
EcoNI CCTNNNNNAGG 1 cut(s) 594
EcoO109I RGGNCCY 1 cut(s) 635
EcoO65I GGTNACC 2 cut(s) 194, 752
EcoRI GAATTC 1 cut(s) 582
EcoRII CCWGG 5 cut(s) 215, 256, 589, 694, 745
EcoT14I CCWWGG 2 cut(s) 40, 757
ErhI CCWWGG 2 cut(s) 40, 757
Esp3I CGTCTC 1 cut(s) 337
FaeI CATG 4 cut(s) 61, 103, 304, 376
FaiI YATR 8 cut(s) 59, 101, 302, 320, 374, 813, 1014, 1160
FalI AAGNNNNNCTT 2 cut(s) 624, 656
FatI CATG 4 cut(s) 57, 99, 300, 372
Fnu4HI GCNGC 6 cut(s) 15, 18, 288, 405, 516, 1134
FokI GGATG 1 cut(s) 953
Fsp4HI GCNGC 6 cut(s) 15, 18, 288, 405, 516, 1134
FspBI CTAG 3 cut(s) 627, 891, 1215
GlaI GCGC 1 cut(s) 1213
GluI GCNGC 6 cut(s) 15, 18, 288, 405, 516, 1134
GsuI CTGGAG 2 cut(s) 93, 361
HaeII RGCGCY 1 cut(s) 1215
HaeIII GGCC 2 cut(s) 191, 1118
HapII CCGG 3 cut(s) 192, 225, 279
HgaI GACGC 1 cut(s) 354
HhaI GCGC 1 cut(s) 1214
Hin1I GRCGYC 1 cut(s) 96
Hin1II CATG 4 cut(s) 61, 103, 304, 376
Hin6I GCGC 1 cut(s) 1212
HinP1I GCGC 1 cut(s) 1212
HincII GTYRAC 2 cut(s) 130, 370
HindII GTYRAC 2 cut(s) 130, 370
HindIII AAGCTT 3 cut(s) 678, 797, 1050
HinfI GANTC 7 cut(s) 212, 485, 610, 688, 803, 970, 1006
HpaII CCGG 3 cut(s) 192, 225, 279
HphI GGTGA 8 cut(s) 25, 65, 188, 263, 746, 886, 937, 1189
Hpy166II GTNNAC 4 cut(s) 130, 139, 370, 928
Hpy188I TCNGA 7 cut(s) 296, 330, 835, 907, 963, 1155, 1168
Hpy188III TCNNGA 5 cut(s) 100, 340, 451, 461, 1084
Hpy8I GTNNAC 4 cut(s) 130, 139, 370, 928
Hpy99I CGWCG 3 cut(s) 360, 554, 618
HpyAV CCTTC 3 cut(s) 653, 838, 1066
HpyCH4III ACNGT 7 cut(s) 37, 53, 82, 275, 356, 575, 1172
HpyCH4IV ACGT 4 cut(s) 96, 241, 714, 852
HpyCH4V TGCA 1 cut(s) 398
HpyF3I CTNAG 9 cut(s) 10, 333, 462, 487, 567, 780, 1017, 1068, 1107
HpySE526I ACGT 4 cut(s) 96, 241, 714, 852
Hsp92I GRCGYC 1 cut(s) 96
Hsp92II CATG 4 cut(s) 61, 103, 304, 376
HspAI GCGC 1 cut(s) 1212
Kzo9I GATC 7 cut(s) 67, 336, 447, 519, 537, 883, 1125
LguI GCTCTTC 1 cut(s) 223
LmnI GCTCC 3 cut(s) 112, 331, 662
Lsp1109I GCAGC 4 cut(s) 299, 391, 502, 1145
LweI GCATC 2 cut(s) 456, 544
MaeI CTAG 3 cut(s) 627, 891, 1215
MaeII ACGT 4 cut(s) 96, 241, 714, 852
MalI GATC 7 cut(s) 69, 338, 449, 521, 539, 885, 1127
MbiI CCGCTC 1 cut(s) 956
MboI GATC 7 cut(s) 67, 336, 447, 519, 537, 883, 1125
MflI RGATCY 1 cut(s) 336
MhlI GDGCHC 1 cut(s) 65
MluCI AATT 2 cut(s) 582, 737
MlyI GAGTC 2 cut(s) 221, 479
MmeI TCCRAC 2 cut(s) 177, 353
MseI TTAA 5 cut(s) 726, 900, 936, 987, 1062
MslI CAYNNNNRTG 1 cut(s) 357
MspA1I CMGCKG 2 cut(s) 491, 515
MspI CCGG 3 cut(s) 192, 225, 279
MspR9I CCNGG 5 cut(s) 217, 258, 591, 696, 747
Mva1269I GAATGC 1 cut(s) 883
MvaI CCWGG 5 cut(s) 217, 258, 591, 696, 747
MvnI CGCG 1 cut(s) 386
NdeII GATC 7 cut(s) 67, 336, 447, 519, 537, 883, 1125
NlaIII CATG 4 cut(s) 61, 103, 304, 376
NlaIV GGNNCC 4 cut(s) 223, 353, 664, 946
NmeAIII GCCGAG 1 cut(s) 235
NspI RCATGY 1 cut(s) 304
OliI CACNNNNGTG 1 cut(s) 357
PaeR7I CTCGAG 1 cut(s) 1082
PagI TCATGA 1 cut(s) 99
PciI ACATGT 1 cut(s) 300
PciSI GCTCTTC 1 cut(s) 223
PcsI WCGNNNNNNNCGW 4 cut(s) 247, 313, 352, 546
PctI GAATGC 1 cut(s) 883
PfeI GAWTC 5 cut(s) 610, 688, 803, 970, 1006
PflFI GACNNNGTC 2 cut(s) 125, 781
PkrI GCNGC 6 cut(s) 16, 19, 289, 406, 517, 1135
PleI GAGTC 2 cut(s) 220, 479
PpsI GAGTC 2 cut(s) 220, 479
Ppu21I YACGTR 1 cut(s) 242
PpuMI RGGWCCY 1 cut(s) 635
PscI ACATGT 1 cut(s) 300
Psp5II RGGWCCY 1 cut(s) 635
Psp6I CCWGG 5 cut(s) 215, 256, 589, 694, 745
PspEI GGTNACC 2 cut(s) 194, 752
PspGI CCWGG 5 cut(s) 215, 256, 589, 694, 745
PspN4I GGNNCC 4 cut(s) 223, 353, 664, 946
PspPI GGNCC 2 cut(s) 635, 1117
PspPPI RGGWCCY 1 cut(s) 635
PsuI RGATCY 1 cut(s) 336
PsyI GACNNNGTC 2 cut(s) 125, 781
PvuII CAGCTG 2 cut(s) 491, 515
RsaI GTAC 1 cut(s) 915
RsaNI GTAC 1 cut(s) 914
RseI CAYNNNNRTG 1 cut(s) 357
SapI GCTCTTC 1 cut(s) 223
SaqAI TTAA 5 cut(s) 726, 900, 936, 987, 1062
SatI GCNGC 6 cut(s) 15, 18, 288, 405, 516, 1134
Sau3AI GATC 7 cut(s) 67, 336, 447, 519, 537, 883, 1125
Sau96I GGNCC 2 cut(s) 635, 1117
SchI GAGTC 2 cut(s) 221, 479
ScrFI CCNGG 5 cut(s) 217, 258, 591, 696, 747
SduI GDGCHC 1 cut(s) 65
SfaNI GCATC 2 cut(s) 456, 544
Sfr274I CTCGAG 1 cut(s) 1082
SinI GGWCC 1 cut(s) 635
SlaI CTCGAG 1 cut(s) 1082
SmiMI CAYNNNNRTG 1 cut(s) 357
SmlI CTYRAG 1 cut(s) 1082
SmoI CTYRAG 1 cut(s) 1082
Sse9I AATT 2 cut(s) 582, 737
SsiI CCGC 6 cut(s) 15, 18, 207, 557, 956, 1023
SspMI CTAG 3 cut(s) 627, 891, 1215
StyD4I CCNGG 5 cut(s) 215, 256, 589, 694, 745
StyI CCWWGG 2 cut(s) 40, 757
TaaI ACNGT 7 cut(s) 37, 53, 82, 275, 356, 575, 1172
TaiI ACGT 4 cut(s) 99, 244, 717, 855
TaqI TCGA 4 cut(s) 115, 450, 1083, 1188
TasI AATT 2 cut(s) 582, 737
TauI GCSGC 2 cut(s) 17, 20
TfiI GAWTC 5 cut(s) 610, 688, 803, 970, 1006
Tru1I TTAA 5 cut(s) 726, 900, 936, 987, 1062
Tru9I TTAA 5 cut(s) 726, 900, 936, 987, 1062
TscAI CASTG 1 cut(s) 1177
TseI GCWGC 4 cut(s) 287, 404, 515, 1133
TspDTI ATGAA 1 cut(s) 389
TspRI CASTG 1 cut(s) 1177
Tth111I GACNNNGTC 2 cut(s) 125, 781
VpaK11BI GGWCC 1 cut(s) 635
XagI CCTNNNNNAGG 1 cut(s) 594
XapI RAATTY 1 cut(s) 582
XceI RCATGY 1 cut(s) 304
XhoI CTCGAG 1 cut(s) 1082
XspI CTAG 3 cut(s) 627, 891, 1215
ZraI GACGTC 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.