Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0003533

Physical Location & Seq

Genomic Coordinates Forward (+)

28221251 .. 28223077

Gene Structure 1827 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G015010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGGCCGCCGTCGCCGCCATTCGTCCCTTGGTCTCAGTCCAAAGCGTCGAAGGAGACATGGCCACCGATCAGGCCCACACCGTGGCGTTACCCGACGTCATGAAGGCCTCGATCCGACCCGACATCGTCACCTTCGTCCACTCCAACATTTCCAAGAACAGCCGCCAGGCCTACGCCGTCTCCAGGAAGGCCGGCCACCAGACCTCCGCCGAGTCCTGGGGTACCGGCCGCGCCGTCTCCCGTATCCCCCGTGTCCCCGGAGGCGGCACCCACCGCGCCGGCCAGGCTGCCTTCGGCAACATGTGCCGCGGCGGCCGCATGTTCGCTCCCACCAAGATCTGGCGCCGCTGGCACCGCAAGATCAACGTCAACCAGAAGCGGTACGCCATCGTCTCCGCCATCGCCGCCTCCTCGGTTCCGTCTCTGGTCACCGCCAGGGGTCACAGGATCGAGAATGTTCCCGAATTGCCCCTGGTCATCAGCGACACCGCCGAGGGCGTCGAGAAGACCTCCGCGGCTATCAAGCTGCTGAAGCAGATCGGGGCTTATGATGATGCTGAGAAGGCCAAGGACAGCCACTCGATTCGGCCCGGGAAGGGGAAGATGAGGAACCGCCGGTACATCAACCGCAAGGGGCCGCTCATTGTTTACGGCACCGAGGGGGCTAAGCTCGTCAATGCCTTCAGGAACATTCCCGGAGTTGATATCATCAATGTGGAGAGGCTCAATCTGCTGAAGCTCGCACCTGGTGGCCATCTAGGCCGGTTTGTTATCTGGACCAAGTGTGCTTTTGAGAAGCTGGACTCGATTTACGGGTCCTTTGATAAGCCTTCGGAGAAGAAGAAGGGGTATGTGCTGCCCAGGGCTAAGATGGTCAATGCTGACCTTGCTAGGATTATCAACTCCGATGAGGTTCAGTCTGTTGTTAGGCCCATCAAGAGGGAGGTGAAGAGGGCACCACTGAAGAAGAACCCGCTCAAGAATCTCAACACCATGCTCAGGCTTAACCCGTATGCTAAGACTGCCAAGAGAATGGCGCTGTTGGCTGAGGAGCAGAGGCTTAAGTCCAAGAAGGAGAAGCTCGACAGGAAGAGGAAGCCCATTTCAAAGGAGGAAGCTTCTACCATCAAGGCAGCTGGAAAAGCATGGTACCAAACGATGATCTCTGACAGTGATTACACCGAGTTTGACGTCTTCCAGAAGTGGCTTGGTGTATCCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0030312 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042221 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribos_L4_asso_C Ribosomal_L4

Protein Analysis

407

Amino Acids

45.18

Weight (kDa)

10.34

Isoelectric Point (pI)

35.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L4	PF00573	29 - 269	4.3e-34	Ribosomal protein L4/L1 family
Ribos_L4_asso_C	PF14374	282 - 355	4.4e-29	60S ribosomal protein L4 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003533)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09630 AT3G09630 AT5G02870 AT5G02870
fragaria_vesca	FvH4_4g07470 FvH4_6g15170 FvH4_6g15170 FvH4_6g15170
malus_domestica	MD12G1126000.v1.1 MD16G1251600.v1.1
prunus_persica	Prupe.1G078100_v2.0.a1 Prupe.1G078100_v2.0.a1 Prupe.6G242600_v2.0.a1
pyrus_communis	pycom04g10060 pycom12g12420 pycom16g21150
rosa_chinensis	RchiOBHm_Chr3g0468471 RchiOBHm_Chr6g0270851
rosa_laevigata	RLG00000013765 RLG00000024426
rosa_multiflora	Rmu_sc0000642.1_g000029 Rmu_sc0008735.1_g000002 Rmu_sc0008735.1_g000003
rosa_roxburghii	Rroxscaffold_6G00412730 Rroxscaffold_7G00197580
rosa_rugosa	Rorug03G0095700 Rorug06G0056900
rosa_samantha	Rh3AG143500 Rh3BG166000 Rh6AG176200 Rh6BG179400 Rh6CG175600 Rh6DG167900
rosa_wichuraiana	Rw3G013590 Rw6G015010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	99, 1194
Acc65I	GGTACC	2 cut(s)	221, 1149
AccB1I	GGYRCC	7 cut(s)	221, 266, 342, 351, 653, 955, 1149
AccB7I	CCANNNNNTGG	2 cut(s)	82, 339
AccBSI	CCGCTC	2 cut(s)	640, 976
AccII	CGCG	4 cut(s)	231, 276, 309, 515
AclWI	GGATC	2 cut(s)	106, 455
AcoI	YGGCCR	7 cut(s)	3, 60, 193, 226, 280, 313, 751
AcuI	CTGAAG	4 cut(s)	551, 667, 755, 983
AcyI	GRCGYC	4 cut(s)	96, 343, 498, 1191
AdeI	CACNNNGTG	2 cut(s)	82, 749
AfaI	GTAC	4 cut(s)	223, 383, 620, 1151
AfiI	CCNNNNNNNGG	9 cut(s)	82, 183, 216, 263, 339, 596, 597, 939, 999
AflII	CTTAAG	1 cut(s)	1061
AflIII	ACRYGT	1 cut(s)	300
AgsI	TTSAA	1 cut(s)	1107
AjnI	CCWGG	8 cut(s)	165, 182, 215, 282, 434, 471, 745, 860
AluBI	AGCT	7 cut(s)	526, 670, 739, 799, 1081, 1118, 1136
AluI	AGCT	7 cut(s)	526, 670, 739, 799, 1081, 1118, 1136
Alw26I	GTCTC	6 cut(s)	37, 48, 184, 241, 397, 426
AlwI	GGATC	2 cut(s)	106, 455
Ama87I	CYCGRG	1 cut(s)	590
ApeKI	GCWGC	4 cut(s)	287, 526, 856, 1133
Asp718I	GGTACC	2 cut(s)	221, 1149
AspLEI	GCGC	4 cut(s)	233, 278, 345, 1039
AspS9I	GGNCC	6 cut(s)	73, 588, 635, 777, 816, 930
AsuC2I	CCSGG	4 cut(s)	258, 591, 592, 696
AsuHPI	GGTGA	3 cut(s)	121, 421, 958
AvaI	CYCGRG	1 cut(s)	590
AvaII	GGWCC	2 cut(s)	777, 816
BaeGI	GKGCMC	1 cut(s)	958
BalI	TGGCCA	2 cut(s)	62, 753
BanI	GGYRCC	7 cut(s)	221, 266, 342, 351, 653, 955, 1149
BbsI	GAAGAC	2 cut(s)	512, 1186
BbvCI	CCTCAGC	1 cut(s)	1047
BbvI	GCAGC	4 cut(s)	274, 513, 843, 1145
BccI	CCATC	6 cut(s)	395, 407, 762, 865, 941, 1133
BceAI	ACGGC	3 cut(s)	161, 218, 667
BciT130I	CCWGG	8 cut(s)	167, 184, 217, 284, 436, 473, 747, 862
BciVI	GTATCC	1 cut(s)	254
BcnI	CCSGG	4 cut(s)	258, 591, 592, 696
BcoDI	GTCTC	6 cut(s)	37, 48, 184, 241, 397, 426
BfaI	CTAG	2 cut(s)	758, 891
BfoI	RGCGCY	2 cut(s)	346, 1040
BfrI	CTTAAG	1 cut(s)	1061
BfuI	GTATCC	1 cut(s)	254
BglI	GCCNNNNNGGC	3 cut(s)	284, 312, 759
BglII	AGATCT	1 cut(s)	336
BlpI	GCTNAGC	1 cut(s)	666
Bme18I	GGWCC	2 cut(s)	777, 816
BmeT110I	CYCGRG	1 cut(s)	590
BmgT120I	GGNCC	6 cut(s)	73, 588, 635, 777, 816, 930
BmrI	ACTGGG	1 cut(s)	1213
BmsI	GCATC	1 cut(s)	544
BmuI	ACTGGG	1 cut(s)	1213
BpiI	GAAGAC	2 cut(s)	512, 1186
BplI	GAGNNNNNCTC	2 cut(s)	494, 526
BpmI	CTGGAG	1 cut(s)	166
Bpu10I	CCTNAGC	2 cut(s)	998, 1047
Bpu1102I	GCTNAGC	1 cut(s)	666
BpuEI	CTTGAG	1 cut(s)	962
BpuMI	CCSGG	4 cut(s)	258, 591, 592, 696
BsaHI	GRCGYC	4 cut(s)	96, 343, 498, 1191
BsaI	GGTCTC	1 cut(s)	37
BsaXI	ACNNNNNCTCC	4 cut(s)	164, 188, 194, 218
Bsc4I	CCNNNNNNNGG	9 cut(s)	82, 183, 216, 263, 339, 596, 597, 939, 999
Bse118I	RCCGGY	5 cut(s)	191, 224, 278, 615, 762
Bse1I	ACTGG	1 cut(s)	1219
BseBI	CCWGG	8 cut(s)	167, 184, 217, 284, 436, 473, 747, 862
BseLI	CCNNNNNNNGG	9 cut(s)	82, 183, 216, 263, 339, 596, 597, 939, 999
BseMII	CTCAG	4 cut(s)	48, 549, 1012, 1038
BseNI	ACTGG	1 cut(s)	1219
BseRI	GAGGAG	2 cut(s)	400, 1064
BseSI	GKGCMC	1 cut(s)	958
BseX3I	CGGCCG	2 cut(s)	226, 313
BseXI	GCAGC	4 cut(s)	274, 513, 843, 1145
Bsh1236I	CGCG	4 cut(s)	231, 276, 309, 515
Bsh1285I	CGRYCG	2 cut(s)	229, 316
BshNI	GGYRCC	7 cut(s)	221, 266, 342, 351, 653, 955, 1149
BsiEI	CGRYCG	2 cut(s)	229, 316
BsiHKCI	CYCGRG	1 cut(s)	590
BsiSI	CCGG	8 cut(s)	192, 225, 258, 279, 591, 616, 696, 763
BslFI	GGGAC	2 cut(s)	9, 239
BslI	CCNNNNNNNGG	9 cut(s)	82, 183, 216, 263, 339, 596, 597, 939, 999
BsmAI	GTCTC	6 cut(s)	37, 48, 184, 241, 397, 426
BsmBI	CGTCTC	4 cut(s)	184, 241, 397, 426
BsmFI	GGGAC	2 cut(s)	9, 239
Bso31I	GGTCTC	1 cut(s)	37
BsoBI	CYCGRG	1 cut(s)	590
Bsp1286I	GDGCHC	1 cut(s)	958
Bsp143I	GATC	7 cut(s)	67, 111, 336, 360, 447, 537, 1161
Bsp1720I	GCTNAGC	1 cut(s)	666
BspCNI	CTCAG	4 cut(s)	47, 550, 1011, 1039
BspFNI	CGCG	4 cut(s)	231, 276, 309, 515
BspHI	TCATGA	1 cut(s)	99
BspPI	GGATC	2 cut(s)	106, 455
BspT107I	GGYRCC	7 cut(s)	221, 266, 342, 351, 653, 955, 1149
BspTI	CTTAAG	1 cut(s)	1061
BspTNI	GGTCTC	1 cut(s)	37
BsrBI	CCGCTC	2 cut(s)	640, 976
BsrFI	RCCGGY	5 cut(s)	191, 224, 278, 615, 762
BsrI	ACTGG	1 cut(s)	1219
BssAI	RCCGGY	5 cut(s)	191, 224, 278, 615, 762
BssMI	GATC	7 cut(s)	67, 111, 336, 360, 447, 537, 1161
BssNI	GRCGYC	4 cut(s)	96, 343, 498, 1191
BssT1I	CCWWGG	2 cut(s)	27, 567
Bst2UI	CCWGG	8 cut(s)	167, 184, 217, 284, 436, 473, 747, 862
Bst4CI	ACNGT	2 cut(s)	82, 1172
Bst6I	CTCTTC	2 cut(s)	944, 1085
BstACI	GRCGYC	4 cut(s)	96, 343, 498, 1191
BstAFI	CTTAAG	1 cut(s)	1061
BstAPI	GCANNNNNTGC	1 cut(s)	303
BstC8I	GCNNGC	4 cut(s)	193, 280, 350, 741
BstDEI	CTNAG	7 cut(s)	34, 558, 666, 867, 998, 1017, 1047
BstDSI	CCRYGG	3 cut(s)	81, 307, 513
BstEII	GGTNACC	1 cut(s)	427
BstFNI	CGCG	4 cut(s)	231, 276, 309, 515
BstH2I	RGCGCY	2 cut(s)	346, 1040
BstHHI	GCGC	4 cut(s)	233, 278, 345, 1039
BstKTI	GATC	7 cut(s)	70, 114, 339, 363, 450, 540, 1164
BstMAI	GTCTC	6 cut(s)	37, 48, 184, 241, 397, 426
BstMBI	GATC	7 cut(s)	67, 111, 336, 360, 447, 537, 1161
BstMCI	CGRYCG	2 cut(s)	229, 316
BstNI	CCWGG	8 cut(s)	167, 184, 217, 284, 436, 473, 747, 862
BstNSI	RCATGY	2 cut(s)	304, 322
BstPI	GGTNACC	1 cut(s)	427
BstSLI	GKGCMC	1 cut(s)	958
BstUI	CGCG	4 cut(s)	231, 276, 309, 515
BstV1I	GCAGC	4 cut(s)	274, 513, 843, 1145
BstV2I	GAAGAC	2 cut(s)	512, 1186
BstX2I	RGATCY	1 cut(s)	336
BstXI	CCANNNNNNTGG	1 cut(s)	1033
BstYI	RGATCY	1 cut(s)	336
BstZI	CGGCCG	2 cut(s)	226, 313
BsuI	GTATCC	1 cut(s)	254
BtgI	CCRYGG	3 cut(s)	81, 307, 513
BtgZI	GCGATG	1 cut(s)	385
BtsIMutI	CAGTG	2 cut(s)	959, 1177
Cac8I	GCNNGC	4 cut(s)	193, 280, 350, 741
CciI	TCATGA	1 cut(s)	99
CciNI	GCGGCCGC	1 cut(s)	313
CfoI	GCGC	4 cut(s)	233, 278, 345, 1039
Cfr10I	RCCGGY	5 cut(s)	191, 224, 278, 615, 762
Cfr13I	GGNCC	6 cut(s)	73, 588, 635, 777, 816, 930
Cfr42I	CCGCGG	2 cut(s)	310, 516
Cfr9I	CCCGGG	1 cut(s)	590
CseI	GACGC	2 cut(s)	34, 487
CsiI	ACCWGGT	1 cut(s)	745
Csp6I	GTAC	4 cut(s)	222, 382, 619, 1150
CviAII	CATG	6 cut(s)	58, 100, 301, 319, 994, 1146
CviQI	GTAC	4 cut(s)	222, 382, 619, 1150
DdeI	CTNAG	7 cut(s)	34, 558, 666, 867, 998, 1017, 1047
DinI	GGCGCC	1 cut(s)	344
DpnI	GATC	7 cut(s)	69, 113, 338, 362, 449, 539, 1163
DpnII	GATC	7 cut(s)	67, 111, 336, 360, 447, 537, 1161
DraIII	CACNNNGTG	2 cut(s)	82, 749
EaeI	YGGCCR	7 cut(s)	3, 60, 193, 226, 280, 313, 751
EagI	CGGCCG	2 cut(s)	226, 313
Eam1104I	CTCTTC	2 cut(s)	944, 1085
EarI	CTCTTC	2 cut(s)	944, 1085
EciI	GGCGGA	2 cut(s)	196, 385
EclXI	CGGCCG	2 cut(s)	226, 313
Eco130I	CCWWGG	2 cut(s)	27, 567
Eco147I	AGGCCT	2 cut(s)	107, 170
Eco31I	GGTCTC	1 cut(s)	37
Eco32I	GATATC	1 cut(s)	706
Eco47I	GGWCC	2 cut(s)	777, 816
Eco52I	CGGCCG	2 cut(s)	226, 313
Eco57I	CTGAAG	4 cut(s)	551, 667, 755, 983
Eco88I	CYCGRG	1 cut(s)	590
Eco91I	GGTNACC	1 cut(s)	427
EcoO109I	RGGNCCY	1 cut(s)	816
EcoO65I	GGTNACC	1 cut(s)	427
EcoRII	CCWGG	8 cut(s)	165, 182, 215, 282, 434, 471, 745, 860
EcoRV	GATATC	1 cut(s)	706
EcoT14I	CCWWGG	2 cut(s)	27, 567
EgeI	GGCGCC	1 cut(s)	344
EheI	GGCGCC	1 cut(s)	344
ErhI	CCWWGG	2 cut(s)	27, 567
Esp3I	CGTCTC	4 cut(s)	184, 241, 397, 426
FaeI	CATG	6 cut(s)	61, 103, 304, 322, 997, 1149
FaiI	YATR	9 cut(s)	59, 101, 302, 320, 549, 852, 995, 1014, 1147
FaqI	GGGAC	2 cut(s)	9, 239
FatI	CATG	6 cut(s)	57, 99, 300, 318, 993, 1145
FauI	CCCGC	1 cut(s)	981
FseI	GGCCGGCC	1 cut(s)	195
FspBI	CTAG	2 cut(s)	758, 891
GlaI	GCGC	4 cut(s)	232, 277, 344, 1038
GsuI	CTGGAG	1 cut(s)	166
HaeII	RGCGCY	2 cut(s)	346, 1040
HapII	CCGG	8 cut(s)	192, 225, 258, 279, 591, 616, 696, 763
HgaI	GACGC	2 cut(s)	34, 487
HhaI	GCGC	4 cut(s)	233, 278, 345, 1039
Hin1I	GRCGYC	4 cut(s)	96, 343, 498, 1191
Hin1II	CATG	6 cut(s)	61, 103, 304, 322, 997, 1149
Hin6I	GCGC	4 cut(s)	231, 276, 343, 1037
HinP1I	GCGC	4 cut(s)	231, 276, 343, 1037
HincII	GTYRAC	1 cut(s)	370
HindII	GTYRAC	1 cut(s)	370
HindIII	AAGCTT	1 cut(s)	1116
HinfI	GANTC	4 cut(s)	212, 583, 803, 982
HpaII	CCGG	8 cut(s)	192, 225, 258, 279, 591, 616, 696, 763
HphI	GGTGA	3 cut(s)	121, 421, 958
Hpy166II	GTNNAC	3 cut(s)	139, 370, 649
Hpy188I	TCNGA	4 cut(s)	116, 835, 907, 1168
Hpy188III	TCNNGA	9 cut(s)	100, 451, 461, 502, 685, 775, 937, 979, 1198
Hpy8I	GTNNAC	3 cut(s)	139, 370, 649
Hpy99I	CGWCG	4 cut(s)	14, 50, 98, 503
HpyCH4III	ACNGT	2 cut(s)	82, 1172
HpyCH4IV	ACGT	3 cut(s)	96, 366, 1191
HpyF3I	CTNAG	7 cut(s)	34, 558, 666, 867, 998, 1017, 1047
HpySE526I	ACGT	3 cut(s)	96, 366, 1191
Hsp92I	GRCGYC	4 cut(s)	96, 343, 498, 1191
Hsp92II	CATG	6 cut(s)	61, 103, 304, 322, 997, 1149
HspAI	GCGC	4 cut(s)	231, 276, 343, 1037
KasI	GGCGCC	1 cut(s)	342
KpnI	GGTACC	2 cut(s)	225, 1153
KroI	GCCGGC	2 cut(s)	191, 278
KroNI	GCCGGC	2 cut(s)	193, 280
KspI	CCGCGG	2 cut(s)	310, 516
Kzo9I	GATC	7 cut(s)	67, 111, 336, 360, 447, 537, 1161
LmnI	GCTCC	2 cut(s)	331, 1051
Lsp1109I	GCAGC	4 cut(s)	274, 513, 843, 1145
LweI	GCATC	1 cut(s)	544
MabI	ACCWGGT	1 cut(s)	745
MaeI	CTAG	2 cut(s)	758, 891
MaeII	ACGT	3 cut(s)	96, 366, 1191
MaeIII	GTNAC	4 cut(s)	87, 127, 427, 440
MalI	GATC	7 cut(s)	69, 113, 338, 362, 449, 539, 1163
MbiI	CCGCTC	2 cut(s)	640, 976
MboI	GATC	7 cut(s)	67, 111, 336, 360, 447, 537, 1161
MboII	GAAGA	9 cut(s)	517, 613, 850, 853, 961, 976, 979, 1102, 1186
MflI	RGATCY	1 cut(s)	336
MhlI	GDGCHC	1 cut(s)	958
MlsI	TGGCCA	2 cut(s)	62, 753
MluCI	AATT	1 cut(s)	464
MluNI	TGGCCA	2 cut(s)	62, 753
Mly113I	GGCGCC	1 cut(s)	343
MlyI	GAGTC	2 cut(s)	221, 797
MmeI	TCCRAC	2 cut(s)	139, 168
Mox20I	TGGCCA	2 cut(s)	62, 753
MroNI	GCCGGC	2 cut(s)	191, 278
MscI	TGGCCA	2 cut(s)	62, 753
MseI	TTAA	2 cut(s)	1005, 1062
MslI	CAYNNNNRTG	1 cut(s)	713
Msp20I	TGGCCA	2 cut(s)	62, 753
MspA1I	CMGCKG	4 cut(s)	309, 348, 515, 1136
MspCI	CTTAAG	1 cut(s)	1061
MspI	CCGG	8 cut(s)	192, 225, 258, 279, 591, 616, 696, 763
MvaI	CCWGG	8 cut(s)	167, 184, 217, 284, 436, 473, 747, 862
MvnI	CGCG	4 cut(s)	231, 276, 309, 515
NaeI	GCCGGC	2 cut(s)	193, 280
NarI	GGCGCC	1 cut(s)	343
NciI	CCSGG	4 cut(s)	258, 591, 592, 696
NdeII	GATC	7 cut(s)	67, 111, 336, 360, 447, 537, 1161
NgoMIV	GCCGGC	2 cut(s)	191, 278
NlaIII	CATG	6 cut(s)	61, 103, 304, 322, 997, 1149
NmeAIII	GCCGAG	2 cut(s)	235, 517
NmuCI	GTSAC	3 cut(s)	127, 427, 440
NotI	GCGGCCGC	1 cut(s)	313
NspI	RCATGY	2 cut(s)	304, 322
PagI	TCATGA	1 cut(s)	99
PasI	CCCWGGG	1 cut(s)	861
PceI	AGGCCT	2 cut(s)	107, 170
PciI	ACATGT	1 cut(s)	300
PcsI	WCGNNNNNNNCGW	1 cut(s)	132
PdiI	GCCGGC	2 cut(s)	193, 280
PfeI	GAWTC	2 cut(s)	583, 982
PflFI	GACNNNGTC	1 cut(s)	125
PflMI	CCANNNNNTGG	2 cut(s)	82, 339
PfoI	TCCNGGA	2 cut(s)	182, 694
PleI	GAGTC	5 cut(s)	70, 220, 325, 797, 1999
PluTI	GGCGCC	1 cut(s)	346
PpsI	GAGTC	2 cut(s)	220, 797
PpuMI	RGGWCCY	1 cut(s)	816
PscI	ACATGT	1 cut(s)	300
Psp5II	RGGWCCY	1 cut(s)	816
Psp6I	CCWGG	8 cut(s)	165, 182, 215, 282, 434, 471, 745, 860
PspEI	GGTNACC	1 cut(s)	427
PspGI	CCWGG	8 cut(s)	165, 182, 215, 282, 434, 471, 745, 860
PspPI	GGNCC	6 cut(s)	73, 588, 635, 777, 816, 930
PspPPI	RGGWCCY	1 cut(s)	816
PsrI	GAACNNNNNNTAC	2 cut(s)	602, 634
PsuI	RGATCY	1 cut(s)	336
PsyI	GACNNNGTC	1 cut(s)	125
PvuII	CAGCTG	1 cut(s)	1136
RigI	GGCCGGCC	1 cut(s)	195
RsaI	GTAC	4 cut(s)	223, 383, 620, 1151
RsaNI	GTAC	4 cut(s)	222, 382, 619, 1150
RseI	CAYNNNNRTG	1 cut(s)	713
SacII	CCGCGG	2 cut(s)	310, 516
SaqAI	TTAA	2 cut(s)	1005, 1062
Sau3AI	GATC	7 cut(s)	67, 111, 336, 360, 447, 537, 1161
Sau96I	GGNCC	6 cut(s)	73, 588, 635, 777, 816, 930
SchI	GAGTC	2 cut(s)	221, 797
SduI	GDGCHC	1 cut(s)	958
SexAI	ACCWGGT	1 cut(s)	745
SfaNI	GCATC	1 cut(s)	544
SfiI	GGCCNNNNNGGCC	1 cut(s)	759
SfoI	GGCGCC	1 cut(s)	344
Sfr303I	CCGCGG	2 cut(s)	310, 516
SgrBI	CCGCGG	2 cut(s)	310, 516
SinI	GGWCC	2 cut(s)	777, 816
SmaI	CCCGGG	1 cut(s)	592
SmiMI	CAYNNNNRTG	1 cut(s)	713
SmlI	CTYRAG	2 cut(s)	977, 1061
SmoI	CTYRAG	2 cut(s)	977, 1061
Sse9I	AATT	1 cut(s)	464
SseBI	AGGCCT	2 cut(s)	107, 170
SspDI	GGCGCC	1 cut(s)	342
SspMI	CTAG	2 cut(s)	758, 891
StuI	AGGCCT	2 cut(s)	107, 170
StyI	CCWWGG	2 cut(s)	27, 567
TaaI	ACNGT	2 cut(s)	82, 1172
TaiI	ACGT	3 cut(s)	99, 369, 1194
TaqI	TCGA	7 cut(s)	48, 110, 450, 501, 581, 806, 1083
TasI	AATT	1 cut(s)	464
TfiI	GAWTC	2 cut(s)	583, 982
Tru1I	TTAA	2 cut(s)	1005, 1062
Tru9I	TTAA	2 cut(s)	1005, 1062
TscAI	CASTG	2 cut(s)	966, 1177
TseFI	GTSAC	3 cut(s)	127, 427, 440
TseI	GCWGC	4 cut(s)	287, 526, 856, 1133
Tsp45I	GTSAC	3 cut(s)	127, 427, 440
TspDTI	ATGAA	1 cut(s)	116
TspGWI	ACGGA	1 cut(s)	408
TspMI	CCCGGG	1 cut(s)	590
TspRI	CASTG	2 cut(s)	966, 1177
Tth111I	GACNNNGTC	1 cut(s)	125
Van91I	CCANNNNNTGG	2 cut(s)	82, 339
Vha464I	CTTAAG	1 cut(s)	1061
VpaK11BI	GGWCC	2 cut(s)	777, 816
XceI	RCATGY	2 cut(s)	304, 322
XcmI	CCANNNNNNNNNTGG	3 cut(s)	25, 868, 1205
XmaI	CCCGGG	1 cut(s)	590
XspI	CTAG	2 cut(s)	758, 891
ZraI	GACGTC	2 cut(s)	97, 1192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.