Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000686.1

Orthogroup ID

OG0008250

Physical Location & Seq

Genomic Coordinates Reverse (-)

22549 .. 24441

Gene Structure 1893 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000686.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1614 bp

atggcttgtcaggaagttcaatcatggagctttggtggtcttacagtagcatttcttgaccttttacttgcttatttcctgctatgcatatcagcttttgtgtttttcgtatcgaagttgttgaaggttttctgggtgtatttgccttgtccttgtaatggggtttttgggtatagaaatcgtgatatttgcttgcataagttgcttaatgagtggcctgttgccaagatttatgctgttcagaatttggtgaagagtaggttcccttttgatattcggtttaaggatcaaacatgcaacttgagtcagaagttgattagggatgtgaatggagggaatggtgttcttgaattggaaggtgagtcatgttgtagtccgttttcgagcccgagattgcaaagtctggttgataaggaaagtgggtatgatgctaaggggaagagaattgtgattctgaagaaaaggactggaattcggcgttctaggagggatagttcaaaatctcctcgtatattcccctttcctcttgatgacagaggtacaagagagatatctggtgaaagctcaattgctgtagctgcaagacacgatgagcctcaagcatccggagacgatagaggggaaggaatatgtggactttctaagttgagtgaatcagctgctgagagtaaaggtctggatgcaagttatggtgaagaaaagtttcccatttttgaaaatgaaagtgatacaatcaggatgttggaaggagcactcgaaaaagagaaagctgcttgtgctgctctctatttagagctggaggaagagcgagctgctgctgcaactgctgctgatgaagcaatggccatgataagtcgtctgcagaaggataaagcattgacagaaatggaagtgagacagtaccaaaggatgattgaagagaaatttgtttatgatgaagaagagatggatgttctgaaagagatacttcttaggagggagaaggagaatcattatttggagaaggaagttgaagcatatagacagatgaattctttaggaaatgaacagtgtaatggtgattcaaatgataggctgcgtgaatggggacaaactgcactttcttcgaatatagattcacaactgatgatgccgtggactaatgaaactaaatctaatcatatggaagtgggaaatattgcagacagtacctctcagtttgacgcttcatttgtcaaaaaacaaatcctttccaatggacatgatgttgttgagaaaagtgtcctttcaggatgggaaggaaaacaatacgcagataatgcaatgtgcccaggaatgactactgaagcagtccaagctaagatagggattgagaaaagtttctatagtgatggaggagagctgcagcaaggtgggcatcttgaaagccattatcatagtccattgcttgatacagagccagctgttcatgacattcatgtcatagatggtaaaactgaaatagtaagaggagaaagtaggcgatcaatttatcctgctttggatggattccaagatccgagatgtggggcttctggagtctgtagcagcttggaacctctgctgagcatggggaaaggcaaaacgcctccttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zein-binding

Protein Analysis

537

Amino Acids

60.01

Weight (kDa)

5.22

Isoelectric Point (pI)

50.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008250)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13160
fragaria_vesca	FvH4_2g19000 FvH4_2g19000 FvH4_2g19000 FvH4_2g19000 FvH4_2g19000 FvH4_2g19000
malus_domestica	MD05G1174700.v1.1 MD10G1163900.v1.1
prunus_persica	Prupe.8G202200_v2.0.a1 Prupe.8G202200_v2.0.a1
pyrus_communis	pycom05g16160 pycom10g14130
rosa_chinensis	RchiOBHm_Chr6g0284791
rosa_laevigata	RLG00000012719
rosa_multiflora	Rmu_sc0000686.1_g000006
rosa_roxburghii	Rroxscaffold_7G00184360
rosa_rugosa	Rorug06G0166900
rosa_samantha	Rh6AG279500 Rh6BG279700 Rh6CG281900 Rh6DG274800
rosa_wichuraiana	Rw6G024040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1457
AccIII	TCCGGA	1 cut(s)	605
AclWI	GGATC	2 cut(s)	294, 1529
AcoI	YGGCCR	1 cut(s)	843
AcsI	RAATTY	4 cut(s)	244, 471, 923, 1030
AcuI	CTGAAG	2 cut(s)	476, 1344
AfaI	GTAC	3 cut(s)	541, 902, 1189
AfiI	CCNNNNNNNGG	2 cut(s)	158, 1544
AgsI	TTSAA	9 cut(s)	20, 124, 350, 498, 716, 917, 1013, 1065, 1403
AjnI	CCWGG	1 cut(s)	1309
AjuI	GAANNNNNNNTTGG	2 cut(s)	980, 1012
AloI	GAACNNNNNNTCC	2 cut(s)	478, 510
Alw21I	GWGCWC	1 cut(s)	754
Alw26I	GTCTC	2 cut(s)	603, 889
AlwI	GGATC	2 cut(s)	294, 1529
AlwNI	CAGNNNCTG	1 cut(s)	662
Ama87I	CYCGRG	1 cut(s)	388
Aor13HI	TCCGGA	1 cut(s)	605
AoxI	GGCC	2 cut(s)	215, 843
ApoI	RAATTY	4 cut(s)	244, 471, 923, 1030
ArsI	GACNNNNNNTTYG	2 cut(s)	1193, 1225
Asp700I	GAANNNNTTC	3 cut(s)	128, 702, 1358
AsuHPI	GGTGA	5 cut(s)	262, 371, 569, 704, 1070
AsuII	TTCGAA	1 cut(s)	1106
AvaI	CYCGRG	1 cut(s)	388
BaeGI	GKGCMC	1 cut(s)	1310
BalI	TGGCCA	1 cut(s)	845
BanII	GRGCYC	1 cut(s)	389
Bbv12I	GWGCWC	1 cut(s)	754
BccI	CCATC	5 cut(s)	940, 1266, 1364, 1460, 1517
BceAI	ACGGC	1 cut(s)	1117
BcgI	CGANNNNNNTGC	2 cut(s)	1086, 1120
BciT130I	CCWGG	1 cut(s)	1311
BcoDI	GTCTC	2 cut(s)	603, 889
BfaI	CTAG	1 cut(s)	483
BfmI	CTRYAG	5 cut(s)	573, 860, 1363, 1382, 1561
BlpI	GCTNAGC	1 cut(s)	1583
Bme1390I	CCNGG	1 cut(s)	1311
BmeT110I	CYCGRG	1 cut(s)	388
BmiI	GGNNCC	2 cut(s)	263, 1575
BmrFI	CCNGG	1 cut(s)	1311
BmsI	GCATC	5 cut(s)	418, 611, 670, 1119, 1405
BpmI	CTGGAG	2 cut(s)	818, 1575
Bpu10I	CCTNAGC	1 cut(s)	432
Bpu1102I	GCTNAGC	1 cut(s)	1583
Bpu14I	TTCGAA	1 cut(s)	1106
BpuEI	CTTGAG	2 cut(s)	322, 582
BsaJI	CCNNGG	2 cut(s)	1133, 1309
BsaWI	WCCGGW	1 cut(s)	605
BsaXI	ACNNNNNCTCC	4 cut(s)	19, 49, 478, 508
Bsc4I	CCNNNNNNNGG	2 cut(s)	158, 1544
Bse1I	ACTGG	1 cut(s)	472
Bse3DI	GCAATG	3 cut(s)	846, 1308, 1421
BseAI	TCCGGA	1 cut(s)	605
BseBI	CCWGG	1 cut(s)	1311
BseDI	CCNNGG	2 cut(s)	1133, 1309
BseGI	GGATG	8 cut(s)	328, 602, 685, 744, 915, 955, 1277, 1528
BseLI	CCNNNNNNNGG	2 cut(s)	158, 1544
BseMI	GCAATG	3 cut(s)	846, 1308, 1421
BseMII	CTCAG	3 cut(s)	654, 1208, 1574
BseNI	ACTGG	1 cut(s)	472
BseRI	GAGGAG	3 cut(s)	495, 1389, 1503
BseSI	GKGCMC	1 cut(s)	1310
BsgI	GTGCAG	1 cut(s)	1080
BshFI	GGCC	2 cut(s)	217, 845
BsiHKAI	GWGCWC	1 cut(s)	754
BsiHKCI	CYCGRG	1 cut(s)	388
BsiSI	CCGG	1 cut(s)	606
BslFI	GGGAC	1 cut(s)	1101
BslI	CCNNNNNNNGG	2 cut(s)	158, 1544
BsmAI	GTCTC	2 cut(s)	603, 889
BsmBI	CGTCTC	1 cut(s)	603
BsmFI	GGGAC	1 cut(s)	1101
BsnI	GGCC	2 cut(s)	217, 845
BsoBI	CYCGRG	1 cut(s)	388
Bsp119I	TTCGAA	1 cut(s)	1106
Bsp1286I	GDGCHC	3 cut(s)	389, 754, 1310
Bsp13I	TCCGGA	1 cut(s)	605
Bsp143I	GATC	3 cut(s)	286, 1502, 1534
Bsp1720I	GCTNAGC	1 cut(s)	1583
BspANI	GGCC	2 cut(s)	217, 845
BspCNI	CTCAG	3 cut(s)	655, 1207, 1575
BspEI	TCCGGA	1 cut(s)	605
BspHI	TCATGA	1 cut(s)	1447
BspLI	GGNNCC	2 cut(s)	263, 1575
BspMAI	CTGCAG	2 cut(s)	864, 1386
BspPI	GGATC	2 cut(s)	294, 1529
BspQI	GCTCTTC	1 cut(s)	798
BspT104I	TTCGAA	1 cut(s)	1106
BsrDI	GCAATG	3 cut(s)	846, 1308, 1421
BsrI	ACTGG	1 cut(s)	472
BssECI	CCNNGG	2 cut(s)	1133, 1309
BssMI	GATC	3 cut(s)	286, 1502, 1534
Bst2UI	CCWGG	1 cut(s)	1311
Bst4CI	ACNGT	4 cut(s)	46, 900, 1050, 1187
Bst6I	CTCTTC	5 cut(s)	248, 434, 798, 912, 936
BstAPI	GCANNNNNTGC	3 cut(s)	202, 827, 1298
BstBI	TTCGAA	1 cut(s)	1106
BstC8I	GCNNGC	3 cut(s)	194, 810, 1440
BstDEI	CTNAG	7 cut(s)	432, 642, 663, 971, 1194, 1338, 1583
BstDSI	CCRYGG	1 cut(s)	1133
BstF5I	GGATG	8 cut(s)	328, 602, 685, 744, 915, 955, 1277, 1528
BstKTI	GATC	3 cut(s)	289, 1505, 1537
BstMAI	GTCTC	2 cut(s)	603, 889
BstMBI	GATC	3 cut(s)	286, 1502, 1534
BstNI	CCWGG	1 cut(s)	1311
BstNSI	RCATGY	1 cut(s)	297
BstSCI	CCNGG	1 cut(s)	1309
BstSFI	CTRYAG	5 cut(s)	573, 860, 1363, 1382, 1561
BstSLI	GKGCMC	1 cut(s)	1310
BstX2I	RGATCY	1 cut(s)	1534
BstYI	RGATCY	1 cut(s)	1534
BsuRI	GGCC	2 cut(s)	217, 845
BtgI	CCRYGG	1 cut(s)	1133
BtsCI	GGATG	8 cut(s)	328, 602, 685, 744, 915, 955, 1277, 1528
BtsIMutI	CAGTG	1 cut(s)	1055
Cac8I	GCNNGC	3 cut(s)	194, 810, 1440
CaiI	CAGNNNCTG	1 cut(s)	662
CciI	TCATGA	1 cut(s)	1447
CseI	GACGC	1 cut(s)	1211
Csp6I	GTAC	3 cut(s)	540, 901, 1188
CviAII	CATG	8 cut(s)	24, 294, 366, 847, 1241, 1448, 1457, 1588
CviQI	GTAC	3 cut(s)	540, 901, 1188
DdeI	CTNAG	7 cut(s)	432, 642, 663, 971, 1194, 1338, 1583
DpnI	GATC	3 cut(s)	288, 1504, 1536
DpnII	GATC	3 cut(s)	286, 1502, 1534
DrdI	GACNNNNNNGTC	1 cut(s)	1457
DseDI	GACNNNNNNGTC	1 cut(s)	1457
EaeI	YGGCCR	1 cut(s)	843
Eam1104I	CTCTTC	5 cut(s)	248, 434, 798, 912, 936
EarI	CTCTTC	5 cut(s)	248, 434, 798, 912, 936
Eco24I	GRGCYC	1 cut(s)	389
Eco32I	GATATC	1 cut(s)	552
Eco57I	CTGAAG	2 cut(s)	476, 1344
Eco88I	CYCGRG	1 cut(s)	388
EcoRI	GAATTC	2 cut(s)	471, 1030
EcoRII	CCWGG	1 cut(s)	1309
EcoRV	GATATC	1 cut(s)	552
EcoT22I	ATGCAT	1 cut(s)	89
EcoT38I	GRGCYC	1 cut(s)	389
Esp3I	CGTCTC	1 cut(s)	603
FaeI	CATG	8 cut(s)	27, 297, 369, 850, 1244, 1451, 1460, 1591
FalI	AAGNNNNNCTT	2 cut(s)	951, 983
FaqI	GGGAC	1 cut(s)	1101
FatI	CATG	8 cut(s)	23, 293, 365, 846, 1240, 1447, 1456, 1587
FauNDI	CATATG	1 cut(s)	1161
FokI	GGATG	8 cut(s)	335, 589, 692, 751, 922, 962, 1284, 1535
FriOI	GRGCYC	1 cut(s)	389
FspBI	CTAG	1 cut(s)	483
GsuI	CTGGAG	2 cut(s)	818, 1575
HaeIII	GGCC	2 cut(s)	217, 845
HapII	CCGG	1 cut(s)	606
HgaI	GACGC	1 cut(s)	1211
Hin1II	CATG	8 cut(s)	27, 297, 369, 850, 1244, 1451, 1460, 1591
HinfI	GANTC	9 cut(s)	304, 362, 451, 653, 988, 1061, 1115, 1527, 1557
HpaII	CCGG	1 cut(s)	606
HphI	GGTGA	5 cut(s)	262, 371, 569, 704, 1070
Hpy166II	GTNNAC	2 cut(s)	635, 1137
Hpy188I	TCNGA	5 cut(s)	243, 309, 456, 957, 1539
Hpy8I	GTNNAC	2 cut(s)	635, 1137
HpyAV	CCTTC	8 cut(s)	118, 350, 617, 740, 859, 976, 997, 1271
HpyCH4III	ACNGT	4 cut(s)	46, 900, 1050, 1187
HpyF3I	CTNAG	7 cut(s)	432, 642, 663, 971, 1194, 1338, 1583
Hsp92II	CATG	8 cut(s)	27, 297, 369, 850, 1244, 1451, 1460, 1591
Kpn2I	TCCGGA	1 cut(s)	605
Kzo9I	GATC	3 cut(s)	286, 1502, 1534
LguI	GCTCTTC	1 cut(s)	798
LmnI	GCTCC	2 cut(s)	27, 749
LweI	GCATC	5 cut(s)	418, 611, 670, 1119, 1405
MaeI	CTAG	1 cut(s)	483
MalI	GATC	3 cut(s)	288, 1504, 1536
MboI	GATC	3 cut(s)	286, 1502, 1534
MboII	GAAGA	9 cut(s)	265, 451, 469, 707, 815, 929, 950, 953, 1095
MfeI	CAATTG	1 cut(s)	567
MflI	RGATCY	1 cut(s)	1534
MhlI	GDGCHC	3 cut(s)	389, 754, 1310
MlsI	TGGCCA	1 cut(s)	845
MluCI	AATT	8 cut(s)	244, 350, 444, 471, 567, 923, 1030, 1506
MluNI	TGGCCA	1 cut(s)	845
MlyI	GAGTC	3 cut(s)	313, 371, 1566
MmeI	TCCRAC	1 cut(s)	723
Mox20I	TGGCCA	1 cut(s)	845
Mph1103I	ATGCAT	1 cut(s)	89
MroI	TCCGGA	1 cut(s)	605
MroXI	GAANNNNTTC	3 cut(s)	128, 702, 1358
MscI	TGGCCA	1 cut(s)	845
MseI	TTAA	3 cut(s)	207, 282, 1612
Msp20I	TGGCCA	1 cut(s)	845
MspA1I	CMGCKG	2 cut(s)	659, 1442
MspI	CCGG	1 cut(s)	606
MspR9I	CCNGG	1 cut(s)	1311
MunI	CAATTG	1 cut(s)	567
MvaI	CCWGG	1 cut(s)	1311
NdeI	CATATG	1 cut(s)	1161
NdeII	GATC	3 cut(s)	286, 1502, 1534
NlaIII	CATG	8 cut(s)	27, 297, 369, 850, 1244, 1451, 1460, 1591
NlaIV	GGNNCC	2 cut(s)	263, 1575
NsiI	ATGCAT	1 cut(s)	89
NspI	RCATGY	1 cut(s)	297
NspV	TTCGAA	1 cut(s)	1106
PagI	TCATGA	1 cut(s)	1447
PciSI	GCTCTTC	1 cut(s)	798
PdmI	GAANNNNTTC	3 cut(s)	128, 702, 1358
PfeI	GAWTC	6 cut(s)	451, 653, 988, 1061, 1115, 1527
PleI	GAGTC	3 cut(s)	312, 370, 1565
PpsI	GAGTC	3 cut(s)	312, 370, 1565
Psp6I	CCWGG	1 cut(s)	1309
PspGI	CCWGG	1 cut(s)	1309
PspN4I	GGNNCC	2 cut(s)	263, 1575
PstI	CTGCAG	2 cut(s)	864, 1386
PstNI	CAGNNNCTG	1 cut(s)	662
PsuI	RGATCY	1 cut(s)	1534
PvuII	CAGCTG	2 cut(s)	659, 1442
RsaI	GTAC	3 cut(s)	541, 902, 1189
RsaNI	GTAC	3 cut(s)	540, 901, 1188
SapI	GCTCTTC	1 cut(s)	798
SaqAI	TTAA	3 cut(s)	207, 282, 1612
Sau3AI	GATC	3 cut(s)	286, 1502, 1534
SchI	GAGTC	3 cut(s)	313, 371, 1566
ScrFI	CCNGG	1 cut(s)	1311
SduI	GDGCHC	3 cut(s)	389, 754, 1310
SfaNI	GCATC	5 cut(s)	418, 611, 670, 1119, 1405
SfcI	CTRYAG	5 cut(s)	573, 860, 1363, 1382, 1561
SfuI	TTCGAA	1 cut(s)	1106
SmlI	CTYRAG	2 cut(s)	301, 597
SmoI	CTYRAG	2 cut(s)	301, 597
Sse9I	AATT	8 cut(s)	244, 350, 444, 471, 567, 923, 1030, 1506
SspI	AATATT	1 cut(s)	1177
SspMI	CTAG	1 cut(s)	483
StyD4I	CCNGG	1 cut(s)	1309
TaaI	ACNGT	4 cut(s)	46, 900, 1050, 1187
TaqI	TCGA	4 cut(s)	113, 383, 756, 1106
TasI	AATT	8 cut(s)	244, 350, 444, 471, 567, 923, 1030, 1506
TfiI	GAWTC	6 cut(s)	451, 653, 988, 1061, 1115, 1527
Tru1I	TTAA	3 cut(s)	207, 282, 1612
Tru9I	TTAA	3 cut(s)	207, 282, 1612
TscAI	CASTG	1 cut(s)	1055
TspDTI	ATGAA	9 cut(s)	735, 849, 951, 1043, 1059, 1158, 1197, 1436, 1445
TspGWI	ACGGA	1 cut(s)	366
TspRI	CASTG	1 cut(s)	1055
XapI	RAATTY	4 cut(s)	244, 471, 923, 1030
XceI	RCATGY	1 cut(s)	297
XmnI	GAANNNNTTC	3 cut(s)	128, 702, 1358
XspI	CTAG	1 cut(s)	483
Zsp2I	ATGCAT	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.