Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000744.1

Orthogroup ID

OG0007366

Physical Location & Seq

Genomic Coordinates Reverse (-)

303260 .. 308004

Gene Structure 4745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

atggcagacctaggcgttgaggcagtcggtgatggagaggtcgaagcgggactcgaaccatgtgcccctgacgaagatgggtttgtgtggttgattgagatctccccgatcgccatcaggaagcctattgatcacccatgcaatctagttttccagttttcccctaaaccccagccgagcaatcagacccatttcttctgtcctttaggatgtgaaccaaatgagaatattcctctatcgttaaatccgattgaactcaaatgcttccaatttaatggcgggggagtgccagtttcgttctgtccgagcggaattcgtgaggaatttcaattcaactcggatgcttctcggaaagttcgcgtcttggataataagatacctatactcgaaaacttgggagctacagaggaccaatttgacaccattgatttgtctgacaatgaaattgttaagctggaaaacttgccctatctttatcgtttgggtactttgattattaataacaatagaattacccatatcaatcccaacattggagagttcttgctgaagttacatactttagtacttaccaacaacatgctagtcaacttggtagagattgatcctcttgcatccctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008380 GO:0009266 GO:0009409 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0015030 GO:0016070 GO:0016071 GO:0016604 GO:0031974 GO:0031981 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050896 GO:0070013 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

LRR_9

Protein Analysis

207

Amino Acids

22.98

Weight (kDa)

4.44

Isoelectric Point (pI)

35.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_9	PF14580	112 - 207	3.1e-37	Leucine-rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0007366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09760
fragaria_vesca	FvH4_4g21991
malus_domestica	MD13G1135200.v1.1 MD16G1130900.v1.1
prunus_persica	Prupe.1G210100_v2.0.a1
pyrus_communis	pycom13g11800 pycom16g11540
rosa_chinensis	RchiOBHm_Chr4g0428191
rosa_laevigata	RLG00000007171
rosa_multiflora	Rmu_sc0000744.1_g000083 Rmu_sc0004940.1_g000005 Rmu_sc0005142.1_g000001 Rmu_sc0009599.1_g000004
rosa_roxburghii	Rroxscaffold_5G00369920
rosa_rugosa	Rorug04G0182200 Rorug04G0182300 Rorug04G0182400 Rorug04G0182500 Rorug04G0223400 Rorug04G0223500
rosa_samantha	Rh4AG280700 Rh4BG286200 Rh4CG301900
rosa_wichuraiana	Rw4G020900 Rw4G024380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	309
AccII	CGCG	1 cut(s)	360
AciI	CCGC	3 cut(s)	47, 279, 309
AclWI	GGATC	1 cut(s)	599
AcsI	RAATTY	2 cut(s)	312, 323
AcuI	CTGAAG	1 cut(s)	569
AfaI	GTAC	2 cut(s)	487, 567
AfiI	CCNNNNNNNGG	1 cut(s)	533
AgsI	TTSAA	3 cut(s)	254, 329, 334
AluBI	AGCT	2 cut(s)	401, 454
AluI	AGCT	2 cut(s)	401, 454
AlwI	GGATC	1 cut(s)	599
ApoI	RAATTY	2 cut(s)	312, 323
AseI	ATTAAT	1 cut(s)	498
AspA2I	CCTAGG	1 cut(s)	10
AspS9I	GGNCC	1 cut(s)	409
AsuHPI	GGTGA	2 cut(s)	41, 125
AvaII	GGWCC	1 cut(s)	409
AvrII	CCTAGG	1 cut(s)	10
BaeGI	GKGCMC	1 cut(s)	67
BccI	CCATC	3 cut(s)	26, 71, 122
BcgI	CGANNNNNNTGC	2 cut(s)	44, 78
BclI	TGATCA	1 cut(s)	130
BfaI	CTAG	3 cut(s)	11, 146, 584
BfmI	CTRYAG	1 cut(s)	402
BglII	AGATCT	1 cut(s)	99
BlnI	CCTAGG	1 cut(s)	10
BmcAI	AGTACT	1 cut(s)	567
Bme18I	GGWCC	1 cut(s)	409
BmgT120I	GGNCC	1 cut(s)	409
BmsI	GCATC	1 cut(s)	331
BsaBI	GATNNNNATC	2 cut(s)	98, 113
BsaJI	CCNNGG	1 cut(s)	10
BsaXI	ACNNNNNCTCC	2 cut(s)	276, 306
Bsc4I	CCNNNNNNNGG	1 cut(s)	533
Bse1I	ACTGG	2 cut(s)	154, 290
Bse8I	GATNNNNATC	2 cut(s)	98, 113
BseDI	CCNNGG	1 cut(s)	10
BseGI	GGATG	3 cut(s)	215, 346, 614
BseJI	GATNNNNATC	2 cut(s)	98, 113
BseLI	CCNNNNNNNGG	1 cut(s)	533
BseNI	ACTGG	2 cut(s)	154, 290
BseSI	GKGCMC	1 cut(s)	67
BseYI	CCCAGC	1 cut(s)	171
Bsh1236I	CGCG	1 cut(s)	360
Bsh1285I	CGRYCG	1 cut(s)	111
BsiEI	CGRYCG	1 cut(s)	111
BslFI	GGGAC	1 cut(s)	63
BslI	CCNNNNNNNGG	1 cut(s)	533
BsmFI	GGGAC	1 cut(s)	63
Bsp1286I	GDGCHC	1 cut(s)	67
Bsp143I	GATC	4 cut(s)	99, 108, 130, 604
BspACI	CCGC	3 cut(s)	47, 279, 309
BspFNI	CGCG	1 cut(s)	360
BspPI	GGATC	1 cut(s)	599
BsrBI	CCGCTC	1 cut(s)	309
BsrI	ACTGG	2 cut(s)	154, 290
BssECI	CCNNGG	1 cut(s)	10
BssMI	GATC	4 cut(s)	99, 108, 130, 604
BssT1I	CCWWGG	1 cut(s)	10
BstF5I	GGATG	3 cut(s)	215, 346, 614
BstFNI	CGCG	1 cut(s)	360
BstKTI	GATC	4 cut(s)	102, 111, 133, 607
BstMBI	GATC	4 cut(s)	99, 108, 130, 604
BstMCI	CGRYCG	1 cut(s)	111
BstNSI	RCATGY	1 cut(s)	583
BstSFI	CTRYAG	1 cut(s)	402
BstSLI	GKGCMC	1 cut(s)	67
BstUI	CGCG	1 cut(s)	360
BstX2I	RGATCY	1 cut(s)	99
BstXI	CCANNNNNNTGG	1 cut(s)	275
BstYI	RGATCY	1 cut(s)	99
BtsCI	GGATG	3 cut(s)	215, 346, 614
Cfr13I	GGNCC	1 cut(s)	409
CseI	GACGC	1 cut(s)	349
Csp6I	GTAC	2 cut(s)	486, 566
CviAII	CATG	3 cut(s)	60, 138, 580
CviJI	RGCY	4 cut(s)	124, 175, 401, 454
CviKI_1	RGCY	4 cut(s)	124, 175, 401, 454
CviQI	GTAC	2 cut(s)	486, 566
DpnI	GATC	4 cut(s)	101, 110, 132, 606
DpnII	GATC	4 cut(s)	99, 108, 130, 604
Eco130I	CCWWGG	1 cut(s)	10
Eco47I	GGWCC	1 cut(s)	409
Eco57I	CTGAAG	1 cut(s)	569
EcoRI	GAATTC	1 cut(s)	312
EcoT14I	CCWWGG	1 cut(s)	10
ErhI	CCWWGG	1 cut(s)	10
FaeI	CATG	3 cut(s)	63, 141, 583
FaiI	YATR	6 cut(s)	61, 139, 383, 519, 558, 581
FaqI	GGGAC	1 cut(s)	63
FatI	CATG	3 cut(s)	59, 137, 579
FauI	CCCGC	2 cut(s)	40, 272
FbaI	TGATCA	1 cut(s)	130
FokI	GGATG	3 cut(s)	222, 353, 601
FspBI	CTAG	3 cut(s)	11, 146, 584
GsaI	CCCAGC	1 cut(s)	175
HgaI	GACGC	1 cut(s)	349
Hin1II	CATG	3 cut(s)	63, 141, 583
HincII	GTYRAC	1 cut(s)	589
HindII	GTYRAC	1 cut(s)	589
HinfI	GANTC	1 cut(s)	51
HphI	GGTGA	2 cut(s)	41, 125
Hpy166II	GTNNAC	2 cut(s)	215, 589
Hpy188I	TCNGA	6 cut(s)	186, 249, 306, 340, 351, 436
Hpy188III	TCNNGA	2 cut(s)	118, 317
Hpy8I	GTNNAC	2 cut(s)	215, 589
HpyCH4V	TGCA	2 cut(s)	141, 614
Hsp92II	CATG	3 cut(s)	63, 141, 583
Ksp22I	TGATCA	1 cut(s)	130
Kzo9I	GATC	4 cut(s)	99, 108, 130, 604
LmnI	GCTCC	1 cut(s)	398
LpnPI	CCDG	6 cut(s)	81, 103, 167, 185, 303, 440
LweI	GCATC	1 cut(s)	331
MaeI	CTAG	3 cut(s)	11, 146, 584
MaeIII	GTNAC	1 cut(s)	552
MalI	GATC	4 cut(s)	101, 110, 132, 606
MbiI	CCGCTC	1 cut(s)	309
MboI	GATC	4 cut(s)	99, 108, 130, 604
MboII	GAAGA	2 cut(s)	86, 187
MflI	RGATCY	1 cut(s)	99
MhlI	GDGCHC	1 cut(s)	67
MluCI	AATT	7 cut(s)	269, 312, 323, 329, 413, 444, 510
MlyI	GAGTC	1 cut(s)	45
MnlI	CCTC	6 cut(s)	13, 31, 243, 313, 400, 618
MseI	TTAA	4 cut(s)	242, 273, 450, 498
MvnI	CGCG	1 cut(s)	360
NdeII	GATC	4 cut(s)	99, 108, 130, 604
NlaIII	CATG	3 cut(s)	63, 141, 583
NmeAIII	GCCGAG	1 cut(s)	201
NspI	RCATGY	1 cut(s)	583
PcsI	WCGNNNNNNNCGW	2 cut(s)	245, 302
Ple19I	CGATCG	1 cut(s)	111
PleI	GAGTC	1 cut(s)	45
PpsI	GAGTC	1 cut(s)	45
PshBI	ATTAAT	1 cut(s)	498
PspFI	CCCAGC	1 cut(s)	171
PspPI	GGNCC	1 cut(s)	409
PsuI	RGATCY	1 cut(s)	99
PvuI	CGATCG	1 cut(s)	111
RsaI	GTAC	2 cut(s)	487, 567
RsaNI	GTAC	2 cut(s)	486, 566
SaqAI	TTAA	4 cut(s)	242, 273, 450, 498
Sau3AI	GATC	4 cut(s)	99, 108, 130, 604
Sau96I	GGNCC	1 cut(s)	409
ScaI	AGTACT	1 cut(s)	567
SchI	GAGTC	1 cut(s)	45
SduI	GDGCHC	1 cut(s)	67
SetI	ASST	5 cut(s)	12, 42, 382, 403, 456
SfaNI	GCATC	1 cut(s)	331
SfcI	CTRYAG	1 cut(s)	402
SinI	GGWCC	1 cut(s)	409
Sse9I	AATT	7 cut(s)	269, 312, 323, 329, 413, 444, 510
SsiI	CCGC	3 cut(s)	47, 279, 309
SspI	AATATT	1 cut(s)	229
SspMI	CTAG	3 cut(s)	11, 146, 584
StyI	CCWWGG	1 cut(s)	10
TaqI	TCGA	3 cut(s)	42, 54, 387
TasI	AATT	7 cut(s)	269, 312, 323, 329, 413, 444, 510
TatI	WGTACW	1 cut(s)	565
Tru1I	TTAA	4 cut(s)	242, 273, 450, 498
Tru9I	TTAA	4 cut(s)	242, 273, 450, 498
TspDTI	ATGAA	1 cut(s)	456
VpaK11BI	GGWCC	1 cut(s)	409
VspI	ATTAAT	1 cut(s)	498
XapI	RAATTY	2 cut(s)	312, 323
XceI	RCATGY	1 cut(s)	583
XmaJI	CCTAGG	1 cut(s)	10
XspI	CTAG	3 cut(s)	11, 146, 584
ZrmI	AGTACT	1 cut(s)	567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.