Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000776.1

Orthogroup ID

OG0007461

Physical Location & Seq

Genomic Coordinates Forward (+)

351570 .. 360442

Gene Structure 8873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3102 bp

atggctgaaacggggaaggtagagagagttttctcaattagctcttactctgtgacaggttgtccacaaaacctcaactgtggccaggagcggctgggcagcagggaggcgaggccgagtgcggctgggctgcagggagacgagctggacagggttggagcggactgggctgcagggggcagttgcgcggtggggctgaaggaggctggagaacttgcggctagggctgcaggcgagctgggcagcgcgggcttgcaggtaggccggtgggctggtgcgtggcaagggcagtggcttgctgcagggaggctgcagcagggaggttggaggctgcggcaagaggttcatgaaacgaggtcacactctcattcaaaccctgaagaggagaagaaagtaatgaagcggaagcagaaggctgagaacaaggcacaagatggagagcaaactccaaagaagcctagggctgatgatcacaatggccatgcaaatggtaaagctctacctgctgagtttgaggaactgtattctgctgtcaaagggcatttgtcaactgaacaaatgcgagaaatcttagaagctaatgatcaagactcttcaggctcagatgctgctgttctcagaaaatggttagctggaatttgttttggtcacagtaatgatgaacagaatagttgtcgtatttgcaatggtaaattagagttcaatggtatacgctattcttgcaccggaacttatagcgagtgggcttcttgcactttcaacacgagggatccaccaaggaagcaggaagcgatcaagttacctgagagtcttgagaagtctcctgcttcagatttgctaaagaaatatcaggacccaagtcgccggcccaagagggatttaagcactcctgataagcccttcactgggatgttaatttctctaatgggccgtcatactagatcacatcaatactggagacaggaagtagataaacatggaggaaaggttgccaaccatgtgattggtgtgacatgcctaattgtgtctcctgcggaacgagaacgaggtggcacaaataaactggctgaagcaatggagagagggatacctgtagtaagtgaacagtggctgattgatagcatagaaaaacaagaaccccagcctctcgaagcatatgaaattgctagtgatcttgctcctgatggcagaggaatcccatgggacaaaatggatcccagtgaagaggcaattgagtcactttcagcagaactcaagctttatgggaagagagctgtctacaaagatacgaaactgcaggagcaaggcggaaaaatcttcgagagggatgggacattgtacaactgtgccttctcacattgtgatctaggacgaaaactgaacgattattgcatcttgcaactgattatggtgccagagaacagcctgaacttgtactacaagaaaggcagagttggggatgaccccaatgcggaggaaaggcttgaagaatggaagaatgtggatgatgctgtgaaagagtttgttaaaatatttgaggaaataaccggaaatgagtttgaaccatgggaaagagagaagaagatccagaagaagccatttaagttttacccaatagacatggacgatggagttgaagtaagacatggaggacttggtcttcgacagctgggagttgctgctacacattgcaaacttcagcccgaggttgcgaattttatgaagatcttatgcagtcaggagatttacaaatatgctctgatggagatgggattggatgccccagaattgccaatggggatgcttaccgatgtccacctaaaaagatgtgaggatgttcttcaagagtttgtggagaaactgaagtcaatgaaggaatcagggccagagtctgaggctgtttggtcggactttagccaaagatggtttaccctgctacactcaactaggcctttcatattcaggaacttccaggaagttgcagatcatgctgctgctgcactggagactgttcgggacataactctgtcctcacatcttattggagacatgagtggagctaccattgatgatcccttgtccgatagatgtagcaaattgggatgctcaatctccccacttgataaggaatccgatgattacaaaatgattctgaagtacctggacaagacctatgaacctgtcaaagttggagatattgaatacggggtgtgtgtggagaacatattcgttgttgaatcaaatgcctgtccatctttggatgaaataaagaagttgcctaacaaatttctcctatggtgtgggacacggagctcaaatctgatgaggcacttgaataagggtttcttgccagcaatatgctctctccctgtcccaggctatatgtttgggaaagcaattgtttgctctgatactgccgcagaggctgcaaggtatggttatactgctgtggacagaccagagggtttcttagttttggctgtggcttctctaggtgaagagattattgagttgaaaaacccaccagaggacacaaaatctttagaggacaagaaagttggagtgaagtgcatagggaaaaagaagactgatgattcggagcactttgtatggcatgatgatatcaaagttccttgtggacgattagtgccttcagataataaagacagcattgtcgagtataacgagtatgctgtctatgatcccaagcaggtttcttacaagtggcgaaaatttagattgatttacattggtgctcgtcatcttatgcaagaagttgcatttttcatctggcatgggatggtcatccgtatgaaaaggtatgcgccttgtggtcggacgagactagttttttctagaatgcatctggatgatgatcaatacctggatctagtttggatatgctcaaacgcatatggggtggctatgtggattggttgtggtgacgggatgagtttggttcagctgggtcgatgtgcactggtggggtggtcacctagtgtgcgatacagacggcaacttcgatggctaccaatggcagcttcgactgcgtttttggcttgtggtgctggtgctttgctcgtcactagggttcggggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003909 GO:0003910 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006266 GO:0006271 GO:0006273 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016874 GO:0016886 GO:0022616 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051103 GO:0051716 GO:0071704 GO:0090304 GO:0140097 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03410 ko04210 ko04212 ko04214 ko04217 map03410 map04210 map04212 map04214 map04217

Pfam Domains

Protein Families

BRCT BRCT_2 PADR1 PARP PARP_reg WGR

Protein Analysis

1033

Amino Acids

115.93

Weight (kDa)

6.13

Isoelectric Point (pI)

44.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PADR1_N	PF21728	170 - 207	4.9e-07	PADR1, N-terminal helical domain
Zn_ribbon_PADR1	PF08063	224 - 261	1.5e-12	PADR1 domain, zinc ribbon fold
BRCT	PF00533	298 - 375	8.6e-07	BRCA1 C Terminus (BRCT) domain
BRCT_2	PF16589	301 - 387	2.8e-06	BRCT domain
WGR	PF05406	447 - 525	4.7e-09	WGR domain
PARP_reg	PF02877	564 - 695	9.7e-24	Poly(ADP-ribose) polymerase, regulatory domain
PARP	PF00644	711 - 908	1e-48	Poly(ADP-ribose) polymerase catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22470
fragaria_vesca	FvH4_3g24670 FvH4_3g24670 FvH4_3g24670 FvH4_3g24670 FvH4_3g24670 FvH4_3g24670 FvH4_3g24670 FvH4_3g24670
malus_domestica	MD03G1142500.v1.1
prunus_persica	Prupe.6G127600_v2.0.a1 Prupe.6G127600_v2.0.a1 Prupe.6G127600_v2.0.a1 Prupe.6G127600_v2.0.a1
pyrus_communis	pycom03g09710
rosa_chinensis	RchiOBHm_Chr5g0044231
rosa_laevigata	RLG00000034257
rosa_multiflora	Rmu_sc0000776.1_g000071
rosa_roxburghii	Rroxscaffold_1G00036790
rosa_rugosa	Rorug05G0212700
rosa_samantha	Rh5AG296800 Rh5BG304300 Rh5CG331300 Rh5DG313100
rosa_wichuraiana	Rw5G027490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2672
Acc36I	ACCTGC	3 cut(s)	247, 511, 2701
AccB1I	GGYRCC	1 cut(s)	1411
AccBSI	CCGCTC	2 cut(s)	91, 161
AccI	GTMKAC	2 cut(s)	709, 1278
AccII	CGCG	2 cut(s)	188, 248
AclWI	GGATC	8 cut(s)	764, 777, 1208, 1221, 1579, 2066, 2696, 2895
AcoI	YGGCCR	2 cut(s)	82, 478
AcsI	RAATTY	4 cut(s)	636, 1714, 2285, 2732
AcuI	CTGAAG	9 cut(s)	218, 399, 579, 813, 1089, 1682, 1883, 2174, 2637
AdeI	CACNNNGTG	2 cut(s)	1361, 2999
AfaI	GTAC	3 cut(s)	1340, 1436, 2159
AfiI	CCNNNNNNNGG	6 cut(s)	382, 905, 906, 1471, 2375, 2527
AhdI	GACNNNNNGTC	1 cut(s)	60
AhlI	ACTAGT	1 cut(s)	2845
AjnI	CCWGG	5 cut(s)	84, 1971, 2160, 2374, 2883
AjuI	GAANNNNNNNTTGG	2 cut(s)	3025, 3057
Alw21I	GWGCWC	4 cut(s)	2315, 2604, 2758, 2980
Alw26I	GTCTC	7 cut(s)	132, 825, 952, 1032, 2000, 2040, 2836
Alw44I	GTGCAC	1 cut(s)	2976
AlwI	GGATC	8 cut(s)	764, 777, 1208, 1221, 1579, 2066, 2696, 2895
AlwNI	CAGNNNCTG	4 cut(s)	608, 1111, 1892, 2426
Ama87I	CYCGRG	1 cut(s)	1703
AoxI	GGCC	8 cut(s)	82, 113, 262, 478, 866, 928, 1883, 1949
ApaLI	GTGCAC	1 cut(s)	2976
ApoI	RAATTY	4 cut(s)	636, 1714, 2285, 2732
ArsI	GACNNNNNNTTYG	8 cut(s)	1644, 1676, 2578, 2610, 3003, 3035, 3037, 3069
Asp700I	GAANNNNTTC	1 cut(s)	2225
AspA2I	CCTAGG	1 cut(s)	458
AspLEI	GCGC	3 cut(s)	188, 248, 2827
AspS9I	GGNCC	4 cut(s)	853, 867, 928, 1883
AsuHPI	GGTGA	3 cut(s)	2507, 2954, 2985
AvaI	CYCGRG	1 cut(s)	1703
AvaII	GGWCC	1 cut(s)	853
AvrII	CCTAGG	1 cut(s)	458
BaeGI	GKGCMC	1 cut(s)	2980
BalI	TGGCCA	2 cut(s)	84, 480
BamHI	GGATCC	2 cut(s)	769, 1213
BanI	GGYRCC	1 cut(s)	1411
BanII	GRGCYC	1 cut(s)	2315
BauI	CACGAG	1 cut(s)	763
BbsI	GAAGAC	2 cut(s)	1652, 2591
Bbv12I	GWGCWC	4 cut(s)	2315, 2604, 2758, 2980
BceAI	ACGGC	2 cut(s)	915, 3029
BciT130I	CCWGG	5 cut(s)	86, 1973, 2162, 2376, 2885
BciVI	GTATCC	1 cut(s)	1080
BclI	TGATCA	3 cut(s)	469, 583, 2875
BcoDI	GTCTC	7 cut(s)	132, 825, 952, 1032, 2000, 2040, 2836
BcuI	ACTAGT	1 cut(s)	2845
BfmI	CTRYAG	7 cut(s)	131, 171, 228, 300, 311, 1092, 1295
BfuAI	ACCTGC	3 cut(s)	247, 511, 2701
BfuI	GTATCC	1 cut(s)	1080
BglI	GCCNNNNNGGC	1 cut(s)	2423
BglII	AGATCT	1 cut(s)	1725
BlnI	CCTAGG	1 cut(s)	458
Bme1390I	CCNGG	5 cut(s)	86, 1973, 2162, 2376, 2885
Bme18I	GGWCC	1 cut(s)	853
BmeRI	GACNNNNNGTC	1 cut(s)	60
BmeT110I	CYCGRG	1 cut(s)	1703
BmgT120I	GGNCC	4 cut(s)	853, 867, 928, 1883
BmiI	GGNNCC	4 cut(s)	771, 855, 1215, 1413
BmrFI	CCNGG	5 cut(s)	86, 1973, 2162, 2376, 2885
BmrI	ACTGGG	3 cut(s)	175, 915, 1212
BmsI	GCATC	7 cut(s)	595, 1401, 1498, 1768, 1791, 2093, 2872
BmuI	ACTGGG	3 cut(s)	175, 915, 1212
BoxI	GACNNNNGTC	1 cut(s)	858
BpiI	GAAGAC	2 cut(s)	1652, 2591
BpmI	CTGGAG	3 cut(s)	228, 976, 2024
BpuEI	CTTGAG	2 cut(s)	833, 1238
BsaBI	GATNNNNATC	2 cut(s)	2804, 2874
BsaJI	CCNNGG	6 cut(s)	458, 776, 1199, 1565, 1704, 2374
BsaWI	WCCGGW	2 cut(s)	725, 1547
BsaXI	ACNNNNNCTCC	4 cut(s)	972, 1002, 1623, 1653
Bsc4I	CCNNNNNNNGG	6 cut(s)	382, 905, 906, 1471, 2375, 2527
Bse118I	RCCGGY	2 cut(s)	264, 864
Bse1I	ACTGG	7 cut(s)	170, 910, 959, 1068, 1218, 2007, 2985
Bse3DI	GCAATG	3 cut(s)	691, 1080, 1687
Bse8I	GATNNNNATC	2 cut(s)	2804, 2874
BseBI	CCWGG	5 cut(s)	86, 1973, 2162, 2376, 2885
BseDI	CCNNGG	6 cut(s)	458, 776, 1199, 1565, 1704, 2374
BseJI	GATNNNNATC	2 cut(s)	2804, 2874
BseLI	CCNNNNNNNGG	6 cut(s)	382, 905, 906, 1471, 2375, 2527
BseMI	GCAATG	3 cut(s)	691, 1080, 1687
BseMII	CTCAG	6 cut(s)	408, 498, 615, 631, 795, 1884
BseNI	ACTGG	7 cut(s)	170, 910, 959, 1068, 1218, 2007, 2985
BseRI	GAGGAG	1 cut(s)	398
BseSI	GKGCMC	1 cut(s)	2980
BseYI	CCCAGC	6 cut(s)	94, 125, 238, 1140, 1669, 2965
BsgI	GTGCAG	1 cut(s)	1983
Bsh1236I	CGCG	2 cut(s)	188, 248
BshFI	GGCC	8 cut(s)	84, 115, 264, 480, 868, 930, 1885, 1951
BshNI	GGYRCC	1 cut(s)	1411
BsiHKAI	GWGCWC	4 cut(s)	2315, 2604, 2758, 2980
BsiHKCI	CYCGRG	1 cut(s)	1703
BsiSI	CCGG	4 cut(s)	265, 726, 865, 1548
BslFI	GGGAC	5 cut(s)	1217, 1345, 2030, 2317, 2357
BslI	CCNNNNNNNGG	6 cut(s)	382, 905, 906, 1471, 2375, 2527
BsmAI	GTCTC	7 cut(s)	132, 825, 952, 1032, 2000, 2040, 2836
BsmBI	CGTCTC	1 cut(s)	132
BsmFI	GGGAC	5 cut(s)	1217, 1345, 2030, 2317, 2357
BsmI	GAATGC	1 cut(s)	2865
BsnI	GGCC	8 cut(s)	84, 115, 264, 480, 868, 930, 1885, 1951
BsoBI	CYCGRG	1 cut(s)	1703
Bsp1286I	GDGCHC	4 cut(s)	2315, 2604, 2758, 2980
Bsp1407I	TGTACA	1 cut(s)	1338
Bsp19I	CCATGG	2 cut(s)	1199, 1565
BspANI	GGCC	8 cut(s)	84, 115, 264, 480, 868, 930, 1885, 1951
BspCNI	CTCAG	6 cut(s)	409, 499, 614, 630, 796, 1885
BspFNI	CGCG	2 cut(s)	188, 248
BspHI	TCATGA	1 cut(s)	346
BspLI	GGNNCC	4 cut(s)	771, 855, 1215, 1413
BspMAI	CTGCAG	6 cut(s)	135, 175, 232, 304, 315, 1299
BspMI	ACCTGC	3 cut(s)	247, 511, 2701
BspPI	GGATC	8 cut(s)	764, 777, 1208, 1221, 1579, 2066, 2696, 2895
BspT107I	GGYRCC	1 cut(s)	1411
BsrBI	CCGCTC	2 cut(s)	91, 161
BsrDI	GCAATG	3 cut(s)	691, 1080, 1687
BsrFI	RCCGGY	2 cut(s)	264, 864
BsrGI	TGTACA	1 cut(s)	1338
BsrI	ACTGG	7 cut(s)	170, 910, 959, 1068, 1218, 2007, 2985
BssAI	RCCGGY	2 cut(s)	264, 864
BssECI	CCNNGG	6 cut(s)	458, 776, 1199, 1565, 1704, 2374
BssNAI	GTATAC	1 cut(s)	710
BssSI	CACGAG	1 cut(s)	763
BssT1I	CCWWGG	4 cut(s)	458, 776, 1199, 1565
Bst1107I	GTATAC	1 cut(s)	710
Bst2BI	CACGAG	1 cut(s)	763
Bst2UI	CCWGG	5 cut(s)	86, 1973, 2162, 2376, 2885
Bst4CI	ACNGT	6 cut(s)	80, 522, 653, 1107, 1346, 2011
Bst6I	CTCTTC	5 cut(s)	375, 598, 1218, 1262, 2493
BstAPI	GCANNNNNTGC	2 cut(s)	1988, 2426
BstAUI	TGTACA	1 cut(s)	1338
BstC8I	GCNNGC	7 cut(s)	232, 236, 250, 254, 297, 866, 2352
BstDEI	CTNAG	8 cut(s)	417, 507, 571, 601, 617, 804, 1893, 2470
BstDSI	CCRYGG	2 cut(s)	1199, 1565
BstEII	GGTNACC	1 cut(s)	2991
BstENI	CCTNNNNNAGG	1 cut(s)	2373
BstFNI	CGCG	2 cut(s)	188, 248
BstHHI	GCGC	3 cut(s)	188, 248, 2827
BstMAI	GTCTC	7 cut(s)	132, 825, 952, 1032, 2000, 2040, 2836
BstNI	CCWGG	5 cut(s)	86, 1973, 2162, 2376, 2885
BstNSI	RCATGY	1 cut(s)	1017
BstPAI	GACNNNNGTC	1 cut(s)	858
BstPI	GGTNACC	1 cut(s)	2991
BstSCI	CCNGG	5 cut(s)	84, 1971, 2160, 2374, 2883
BstSFI	CTRYAG	7 cut(s)	131, 171, 228, 300, 311, 1092, 1295
BstSLI	GKGCMC	1 cut(s)	2980
BstUI	CGCG	2 cut(s)	188, 248
BstV2I	GAAGAC	2 cut(s)	1652, 2591
BstX2I	RGATCY	5 cut(s)	769, 1213, 1584, 1725, 2887
BstXI	CCANNNNNNTGG	2 cut(s)	488, 1004
BstYI	RGATCY	5 cut(s)	769, 1213, 1584, 1725, 2887
BstZ17I	GTATAC	1 cut(s)	710
BsuI	GTATCC	1 cut(s)	1080
BsuRI	GGCC	8 cut(s)	84, 115, 264, 480, 868, 930, 1885, 1951
BtgI	CCRYGG	2 cut(s)	1199, 1565
BtsI	GCAGTG	1 cut(s)	296
BtsIMutI	CAGTG	6 cut(s)	296, 903, 1112, 1225, 2000, 2978
BveI	ACCTGC	3 cut(s)	247, 511, 2701
Cac8I	GCNNGC	7 cut(s)	232, 236, 250, 254, 297, 866, 2352
CaiI	CAGNNNCTG	4 cut(s)	608, 1111, 1892, 2426
CciI	TCATGA	1 cut(s)	346
CfoI	GCGC	3 cut(s)	188, 248, 2827
Cfr10I	RCCGGY	2 cut(s)	264, 864
Cfr13I	GGNCC	4 cut(s)	853, 867, 928, 1883
Csp6I	GTAC	3 cut(s)	1339, 1435, 2158
CspCI	CAANNNNNGTGG	2 cut(s)	272, 307
CviQI	GTAC	3 cut(s)	1339, 1435, 2158
DdeI	CTNAG	8 cut(s)	417, 507, 571, 601, 617, 804, 1893, 2470
DraIII	CACNNNGTG	2 cut(s)	1361, 2999
DrdI	GACNNNNNNGTC	1 cut(s)	2672
DriI	GACNNNNNGTC	1 cut(s)	60
DseDI	GACNNNNNNGTC	1 cut(s)	2672
EaeI	YGGCCR	2 cut(s)	82, 478
Eam1104I	CTCTTC	5 cut(s)	375, 598, 1218, 1262, 2493
Eam1105I	GACNNNNNGTC	1 cut(s)	60
EarI	CTCTTC	5 cut(s)	375, 598, 1218, 1262, 2493
EciI	GGCGGA	1 cut(s)	1323
Ecl136II	GAGCTC	1 cut(s)	2313
Eco130I	CCWWGG	4 cut(s)	458, 776, 1199, 1565
Eco147I	AGGCCT	1 cut(s)	1951
Eco24I	GRGCYC	1 cut(s)	2315
Eco32I	GATATC	1 cut(s)	2623
Eco47I	GGWCC	1 cut(s)	853
Eco53kI	GAGCTC	1 cut(s)	2313
Eco57I	CTGAAG	9 cut(s)	218, 399, 579, 813, 1089, 1682, 1883, 2174, 2637
Eco88I	CYCGRG	1 cut(s)	1703
Eco91I	GGTNACC	1 cut(s)	2991
EcoICRI	GAGCTC	1 cut(s)	2313
EcoNI	CCTNNNNNAGG	1 cut(s)	2373
EcoO109I	RGGNCCY	1 cut(s)	853
EcoO65I	GGTNACC	1 cut(s)	2991
EcoRII	CCWGG	5 cut(s)	84, 1971, 2160, 2374, 2883
EcoRV	GATATC	1 cut(s)	2623
EcoT14I	CCWWGG	4 cut(s)	458, 776, 1199, 1565
EcoT22I	ATGCAT	1 cut(s)	2865
EcoT38I	GRGCYC	1 cut(s)	2315
ErhI	CCWWGG	4 cut(s)	458, 776, 1199, 1565
Esp3I	CGTCTC	1 cut(s)	132
FalI	AAGNNNNNCTT	2 cut(s)	2330, 2362
FaqI	GGGAC	5 cut(s)	1217, 1345, 2030, 2317, 2357
FauI	CCCGC	1 cut(s)	241
FauNDI	CATATG	2 cut(s)	1156, 2914
FbaI	TGATCA	3 cut(s)	469, 583, 2875
FblI	GTMKAC	2 cut(s)	709, 1278
FriOI	GRGCYC	1 cut(s)	2315
GlaI	GCGC	3 cut(s)	187, 247, 2826
GsaI	CCCAGC	6 cut(s)	98, 129, 242, 1144, 1673, 2969
GsuI	CTGGAG	3 cut(s)	228, 976, 2024
HaeIII	GGCC	8 cut(s)	84, 115, 264, 480, 868, 930, 1885, 1951
HapII	CCGG	4 cut(s)	265, 726, 865, 1548
HhaI	GCGC	3 cut(s)	188, 248, 2827
Hin6I	GCGC	3 cut(s)	186, 246, 2825
HinP1I	GCGC	3 cut(s)	186, 246, 2825
HincII	GTYRAC	1 cut(s)	549
HindII	GTYRAC	1 cut(s)	549
HindIII	AAGCTT	1 cut(s)	1256
HpaII	CCGG	4 cut(s)	265, 726, 865, 1548
HphI	GGTGA	3 cut(s)	2507, 2954, 2985
HpyAV	CCTTC	7 cut(s)	10, 193, 406, 910, 1360, 1867, 2661
HpyCH4III	ACNGT	6 cut(s)	80, 522, 653, 1107, 1346, 2011
HpyF3I	CTNAG	8 cut(s)	417, 507, 571, 601, 617, 804, 1893, 2470
HspAI	GCGC	3 cut(s)	186, 246, 2825
KroI	GCCGGC	1 cut(s)	864
KroNI	GCCGGC	1 cut(s)	866
Ksp22I	TGATCA	3 cut(s)	469, 583, 2875
LmnI	GCTCC	7 cut(s)	88, 158, 1183, 1300, 2057, 2310, 2599
LweI	GCATC	7 cut(s)	595, 1401, 1498, 1768, 1791, 2093, 2872
MaeIII	GTNAC	9 cut(s)	52, 357, 647, 798, 1009, 1236, 2942, 2991, 3082
MbiI	CCGCTC	2 cut(s)	91, 161
MfeI	CAATTG	2 cut(s)	1230, 2397
MflI	RGATCY	5 cut(s)	769, 1213, 1584, 1725, 2887
MhlI	GDGCHC	4 cut(s)	2315, 2604, 2758, 2980
MlsI	TGGCCA	2 cut(s)	84, 480
MluNI	TGGCCA	2 cut(s)	84, 480
MlyI	GAGTC	4 cut(s)	584, 817, 1244, 1898
MmeI	TCCRAC	6 cut(s)	136, 305, 1887, 2170, 2539, 2816
Mox20I	TGGCCA	2 cut(s)	84, 480
Mph1103I	ATGCAT	1 cut(s)	2865
MroNI	GCCGGC	1 cut(s)	864
MroXI	GAANNNNTTC	1 cut(s)	2225
MscI	TGGCCA	2 cut(s)	84, 480
MseI	TTAA	4 cut(s)	881, 914, 1527, 1602
MslI	CAYNNNNRTG	5 cut(s)	486, 654, 908, 2810, 2868
Msp20I	TGGCCA	2 cut(s)	84, 480
MspA1I	CMGCKG	2 cut(s)	1669, 2965
MspI	CCGG	4 cut(s)	265, 726, 865, 1548
MspR9I	CCNGG	5 cut(s)	86, 1973, 2162, 2376, 2885
MunI	CAATTG	2 cut(s)	1230, 2397
Mva1269I	GAATGC	1 cut(s)	2865
MvaI	CCWGG	5 cut(s)	86, 1973, 2162, 2376, 2885
MvnI	CGCG	2 cut(s)	188, 248
NaeI	GCCGGC	1 cut(s)	866
NcoI	CCATGG	2 cut(s)	1199, 1565
NdeI	CATATG	2 cut(s)	1156, 2914
NgoMIV	GCCGGC	1 cut(s)	864
NlaIV	GGNNCC	4 cut(s)	771, 855, 1215, 1413
NmeAIII	GCCGAG	1 cut(s)	141
NmuCI	GTSAC	8 cut(s)	52, 357, 647, 1009, 1236, 2942, 2991, 3082
NsiI	ATGCAT	1 cut(s)	2865
NspI	RCATGY	1 cut(s)	1017
PagI	TCATGA	1 cut(s)	346
PceI	AGGCCT	1 cut(s)	1951
PcsI	WCGNNNNNNNCGW	2 cut(s)	2682, 3019
PctI	GAATGC	1 cut(s)	2865
PdiI	GCCGGC	1 cut(s)	866
PdmI	GAANNNNTTC	1 cut(s)	2225
PfeI	GAWTC	6 cut(s)	1194, 1877, 2129, 2149, 2237, 2594
PflFI	GACNNNGTC	1 cut(s)	1656
PfoI	TCCNGGA	1 cut(s)	1971
PleI	GAGTC	4 cut(s)	584, 816, 1243, 1897
PpsI	GAGTC	4 cut(s)	584, 816, 1243, 1897
PpuMI	RGGWCCY	1 cut(s)	853
PshAI	GACNNNNGTC	1 cut(s)	858
Psp124BI	GAGCTC	1 cut(s)	2315
Psp5II	RGGWCCY	1 cut(s)	853
Psp6I	CCWGG	5 cut(s)	84, 1971, 2160, 2374, 2883
PspEI	GGTNACC	1 cut(s)	2991
PspFI	CCCAGC	6 cut(s)	94, 125, 238, 1140, 1669, 2965
PspGI	CCWGG	5 cut(s)	84, 1971, 2160, 2374, 2883
PspN4I	GGNNCC	4 cut(s)	771, 855, 1215, 1413
PspPI	GGNCC	4 cut(s)	853, 867, 928, 1883
PspPPI	RGGWCCY	1 cut(s)	853
PsrI	GAACNNNNNNTAC	2 cut(s)	1421, 1453
PstI	CTGCAG	6 cut(s)	135, 175, 232, 304, 315, 1299
PstNI	CAGNNNCTG	4 cut(s)	608, 1111, 1892, 2426
PsuI	RGATCY	5 cut(s)	769, 1213, 1584, 1725, 2887
PsyI	GACNNNGTC	1 cut(s)	1656
PvuII	CAGCTG	2 cut(s)	1669, 2965
RsaI	GTAC	3 cut(s)	1340, 1436, 2159
RsaNI	GTAC	3 cut(s)	1339, 1435, 2158
RseI	CAYNNNNRTG	5 cut(s)	486, 654, 908, 2810, 2868
SacI	GAGCTC	1 cut(s)	2315
SaqAI	TTAA	4 cut(s)	881, 914, 1527, 1602
Sau96I	GGNCC	4 cut(s)	853, 867, 928, 1883
SchI	GAGTC	4 cut(s)	584, 817, 1244, 1898
ScrFI	CCNGG	5 cut(s)	86, 1973, 2162, 2376, 2885
SduI	GDGCHC	4 cut(s)	2315, 2604, 2758, 2980
SfaNI	GCATC	7 cut(s)	595, 1401, 1498, 1768, 1791, 2093, 2872
SfcI	CTRYAG	7 cut(s)	131, 171, 228, 300, 311, 1092, 1295
SinI	GGWCC	1 cut(s)	853
SmiMI	CAYNNNNRTG	5 cut(s)	486, 654, 908, 2810, 2868
SmlI	CTYRAG	2 cut(s)	812, 1253
SmoI	CTYRAG	2 cut(s)	812, 1253
SpeI	ACTAGT	1 cut(s)	2845
SseBI	AGGCCT	1 cut(s)	1951
SspI	AATATT	1 cut(s)	1533
SstI	GAGCTC	1 cut(s)	2315
StuI	AGGCCT	1 cut(s)	1951
StyD4I	CCNGG	5 cut(s)	84, 1971, 2160, 2374, 2883
StyI	CCWWGG	4 cut(s)	458, 776, 1199, 1565
TaaI	ACNGT	6 cut(s)	80, 522, 653, 1107, 1346, 2011
TaqI	TCGA	7 cut(s)	1149, 1320, 1663, 2676, 2971, 3022, 3044
TatI	WGTACW	2 cut(s)	1338, 1434
TauI	GCSGC	5 cut(s)	94, 125, 221, 337, 2420
TfiI	GAWTC	6 cut(s)	1194, 1877, 2129, 2149, 2237, 2594
Tru1I	TTAA	4 cut(s)	881, 914, 1527, 1602
Tru9I	TTAA	4 cut(s)	881, 914, 1527, 1602
TscAI	CASTG	6 cut(s)	296, 910, 1112, 1225, 2007, 2985
TseFI	GTSAC	8 cut(s)	52, 357, 647, 1009, 1236, 2942, 2991, 3082
Tsp45I	GTSAC	8 cut(s)	52, 357, 647, 1009, 1236, 2942, 2991, 3082
TspGWI	ACGGA	2 cut(s)	2323, 2798
TspRI	CASTG	6 cut(s)	296, 910, 1112, 1225, 2007, 2985
Tth111I	GACNNNGTC	1 cut(s)	1656
VneI	GTGCAC	1 cut(s)	2976
VpaK11BI	GGWCC	1 cut(s)	853
XagI	CCTNNNNNAGG	1 cut(s)	2373
XapI	RAATTY	4 cut(s)	636, 1714, 2285, 2732
XbaI	TCTAGA	1 cut(s)	2855
XceI	RCATGY	1 cut(s)	1017
XmaJI	CCTAGG	1 cut(s)	458
XmiI	GTMKAC	2 cut(s)	709, 1278
XmnI	GAANNNNTTC	1 cut(s)	2225
Zsp2I	ATGCAT	1 cut(s)	2865

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.