Rmu_sc0000776.1_g000081

Zinc finger A20 and AN1 domain-containing stress-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000776.1
OG0014974
Physical Location & Seq
Reverse (-)
401489 .. 401890
402 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 402 bp
ctgcagcacaaagagcaacaagccctcgctctcaatcaaaccttcatctcagcttcgtccacctcttcttcttcttcttcttcggctttcttcccttcgtcgccggtctcggtctcgtcgccccagaacgagggcgcggccgaggtcgcgacgaaggtagaggagaagaagaaggaggaggaagcggtgcccgggacagcggggaggcaggcgaacaggtgtacggagtgcaggcggcgcgtggggttgacggggttcaagtgcaggtgcgggatgacgtactgcgggacccacaggtacccggagaagcacgagcgcgggttcgacttcaggagcatggggagggagcagatcgccaaggccaatccggtcgtcaaggccgacaagctgcagaagatctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-A20 zf-AN1

Protein Analysis

133

Amino Acids

14.57

Weight (kDa)

9.37

Isoelectric Point (pI)

70.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-AN1 PF01428 74 - 105 3.3e-08 AN1-like Zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014974)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27580 AT2G27580
fragaria_vesca FvH4_3g24650
malus_domestica MD03G1142300.v1.1 MD11G1162800.v1.1
prunus_persica Prupe.6G127400_v2.0.a1
pyrus_communis pycom03g09700
rosa_chinensis RchiOBHm_Chr5g0044211
rosa_laevigata RLG00000034253
rosa_multiflora Rmu_sc0000776.1_g000081 Rmu_sc0002731.1_g000003
rosa_roxburghii Rroxscaffold_1G00036830
rosa_rugosa Rorug05G0211700
rosa_samantha Rh5BG304100 Rh5DG312800
rosa_wichuraiana Rw5G027460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 255
Acc36I ACCTGC 1 cut(s) 255
Acc65I GGTACC 1 cut(s) 297
AccB1I GGYRCC 2 cut(s) 187, 297
AccII CGCG 4 cut(s) 137, 149, 240, 318
AciI CCGC 7 cut(s) 137, 185, 200, 235, 270, 285, 318
AcoI YGGCCR 1 cut(s) 138
AcuI CTGAAG 1 cut(s) 313
AfaI GTAC 3 cut(s) 223, 281, 299
AfiI CCNNNNNNNGG 1 cut(s) 130
AgsI TTSAA 1 cut(s) 259
AluBI AGCT 2 cut(s) 53, 388
AluI AGCT 2 cut(s) 53, 388
Alw26I GTCTC 2 cut(s) 112, 118
Ama87I CYCGRG 1 cut(s) 191
AoxI GGCC 3 cut(s) 138, 360, 378
ApeKI GCWGC 2 cut(s) 4, 388
Asp718I GGTACC 1 cut(s) 297
AspLEI GCGC 3 cut(s) 137, 240, 318
AspS9I GGNCC 1 cut(s) 288
AsuC2I CCSGG 3 cut(s) 192, 193, 302
AvaI CYCGRG 1 cut(s) 191
AvaII GGWCC 1 cut(s) 288
BaeGI GKGCMC 1 cut(s) 192
BanI GGYRCC 2 cut(s) 187, 297
BauI CACGAG 1 cut(s) 311
BbvI GCAGC 2 cut(s) 16, 375
BcnI CCSGG 3 cut(s) 192, 193, 302
BcoDI GTCTC 2 cut(s) 112, 118
BfmI CTRYAG 2 cut(s) 2, 389
BfuAI ACCTGC 1 cut(s) 255
BglII AGATCT 1 cut(s) 396
BisI GCNGC 4 cut(s) 5, 138, 236, 389
BlsI GCNGC 4 cut(s) 6, 139, 237, 390
Bme1390I CCNGG 3 cut(s) 192, 193, 302
Bme18I GGWCC 1 cut(s) 288
BmeT110I CYCGRG 1 cut(s) 191
BmgT120I GGNCC 1 cut(s) 288
BmiI GGNNCC 4 cut(s) 189, 289, 290, 299
BmrFI CCNGG 3 cut(s) 192, 193, 302
BpuMI CCSGG 3 cut(s) 192, 193, 302
BsaI GGTCTC 2 cut(s) 112, 118
BsaJI CCNNGG 3 cut(s) 141, 191, 357
BsaWI WCCGGW 1 cut(s) 367
Bsc4I CCNNNNNNNGG 1 cut(s) 130
Bse118I RCCGGY 1 cut(s) 103
BseDI CCNNGG 3 cut(s) 141, 191, 357
BseGI GGATG 1 cut(s) 279
BseLI CCNNNNNNNGG 1 cut(s) 130
BseMII CTCAG 1 cut(s) 63
BseRI GAGGAG 2 cut(s) 176, 191
BseSI GKGCMC 1 cut(s) 192
BseX3I CGGCCG 1 cut(s) 138
BseXI GCAGC 2 cut(s) 16, 375
BsgI GTGCAG 2 cut(s) 250, 283
Bsh1236I CGCG 4 cut(s) 137, 149, 240, 318
Bsh1285I CGRYCG 2 cut(s) 141, 372
BshFI GGCC 3 cut(s) 140, 362, 380
BshNI GGYRCC 2 cut(s) 187, 297
BsiEI CGRYCG 2 cut(s) 141, 372
BsiHKCI CYCGRG 1 cut(s) 191
BsiSI CCGG 4 cut(s) 104, 192, 302, 368
BslFI GGGAC 2 cut(s) 208, 301
BslI CCNNNNNNNGG 1 cut(s) 130
BsmAI GTCTC 2 cut(s) 112, 118
BsmFI GGGAC 2 cut(s) 208, 301
BsnI GGCC 3 cut(s) 140, 362, 380
Bso31I GGTCTC 2 cut(s) 112, 118
BsoBI CYCGRG 1 cut(s) 191
Bsp1286I GDGCHC 1 cut(s) 192
Bsp143I GATC 2 cut(s) 351, 396
Bsp68I TCGCGA 1 cut(s) 149
BspACI CCGC 7 cut(s) 137, 185, 200, 235, 270, 285, 318
BspANI GGCC 3 cut(s) 140, 362, 380
BspCNI CTCAG 1 cut(s) 62
BspFNI CGCG 4 cut(s) 137, 149, 240, 318
BspLI GGNNCC 4 cut(s) 189, 289, 290, 299
BspMAI CTGCAG 2 cut(s) 6, 393
BspMI ACCTGC 1 cut(s) 255
BspT107I GGYRCC 2 cut(s) 187, 297
BspTNI GGTCTC 2 cut(s) 112, 118
BsrFI RCCGGY 1 cut(s) 103
BssAI RCCGGY 1 cut(s) 103
BssECI CCNNGG 3 cut(s) 141, 191, 357
BssMI GATC 2 cut(s) 351, 396
BssSI CACGAG 1 cut(s) 311
BssT1I CCWWGG 1 cut(s) 357
Bst2BI CACGAG 1 cut(s) 311
Bst6I CTCTTC 1 cut(s) 70
BstC8I GCNNGC 2 cut(s) 210, 233
BstDEI CTNAG 1 cut(s) 49
BstF5I GGATG 1 cut(s) 279
BstFNI CGCG 4 cut(s) 137, 149, 240, 318
BstHHI GCGC 3 cut(s) 137, 240, 318
BstKTI GATC 2 cut(s) 354, 399
BstMAI GTCTC 2 cut(s) 112, 118
BstMBI GATC 2 cut(s) 351, 396
BstMCI CGRYCG 2 cut(s) 141, 372
BstMWI GCNNNNNNNGC 3 cut(s) 13, 146, 237
BstSCI CCNGG 3 cut(s) 190, 191, 300
BstSFI CTRYAG 2 cut(s) 2, 389
BstSLI GKGCMC 1 cut(s) 192
BstUI CGCG 4 cut(s) 137, 149, 240, 318
BstV1I GCAGC 2 cut(s) 16, 375
BstX2I RGATCY 1 cut(s) 396
BstYI RGATCY 1 cut(s) 396
BstZI CGGCCG 1 cut(s) 138
BsuRI GGCC 3 cut(s) 140, 362, 380
BtsCI GGATG 1 cut(s) 279
BtuMI TCGCGA 1 cut(s) 149
BveI ACCTGC 1 cut(s) 255
Cac8I GCNNGC 2 cut(s) 210, 233
CfoI GCGC 3 cut(s) 137, 240, 318
Cfr10I RCCGGY 1 cut(s) 103
Cfr13I GGNCC 1 cut(s) 288
Cfr9I CCCGGG 1 cut(s) 191
Csp6I GTAC 3 cut(s) 222, 280, 298
CviAII CATG 1 cut(s) 337
CviJI RGCY 7 cut(s) 23, 53, 86, 140, 362, 380, 388
CviKI_1 RGCY 7 cut(s) 23, 53, 86, 140, 362, 380, 388
CviQI GTAC 3 cut(s) 222, 280, 298
DdeI CTNAG 1 cut(s) 49
DpnI GATC 2 cut(s) 353, 398
DpnII GATC 2 cut(s) 351, 396
EaeI YGGCCR 1 cut(s) 138
EagI CGGCCG 1 cut(s) 138
Eam1104I CTCTTC 1 cut(s) 70
EarI CTCTTC 1 cut(s) 70
EclXI CGGCCG 1 cut(s) 138
Eco130I CCWWGG 1 cut(s) 357
Eco31I GGTCTC 2 cut(s) 112, 118
Eco47I GGWCC 1 cut(s) 288
Eco52I CGGCCG 1 cut(s) 138
Eco57I CTGAAG 1 cut(s) 313
Eco88I CYCGRG 1 cut(s) 191
EcoO109I RGGNCCY 1 cut(s) 288
EcoT14I CCWWGG 1 cut(s) 357
ErhI CCWWGG 1 cut(s) 357
FaeI CATG 1 cut(s) 340
FaiI YATR 1 cut(s) 338
FaqI GGGAC 2 cut(s) 208, 301
FatI CATG 1 cut(s) 336
FauI CCCGC 4 cut(s) 193, 263, 278, 311
Fnu4HI GCNGC 4 cut(s) 5, 138, 236, 389
FokI GGATG 1 cut(s) 286
Fsp4HI GCNGC 4 cut(s) 5, 138, 236, 389
GlaI GCGC 3 cut(s) 136, 239, 317
GluI GCNGC 4 cut(s) 5, 138, 236, 389
HaeIII GGCC 3 cut(s) 140, 362, 380
HapII CCGG 4 cut(s) 104, 192, 302, 368
HhaI GCGC 3 cut(s) 137, 240, 318
Hin1II CATG 1 cut(s) 340
Hin6I GCGC 3 cut(s) 135, 238, 316
HinP1I GCGC 3 cut(s) 135, 238, 316
HincII GTYRAC 1 cut(s) 249
HindII GTYRAC 1 cut(s) 249
HpaII CCGG 4 cut(s) 104, 192, 302, 368
Hpy166II GTNNAC 3 cut(s) 60, 222, 249
Hpy188I TCNGA 1 cut(s) 401
Hpy188III TCNNGA 2 cut(s) 148, 331
Hpy8I GTNNAC 3 cut(s) 60, 222, 249
Hpy99I CGWCG 3 cut(s) 103, 121, 154
HpyAV CCTTC 4 cut(s) 52, 105, 148, 166
HpyCH4IV ACGT 1 cut(s) 278
HpyCH4V TGCA 4 cut(s) 4, 231, 264, 391
HpyF10VI GCNNNNNNNGC 3 cut(s) 13, 146, 237
HpyF3I CTNAG 1 cut(s) 49
HpySE526I ACGT 1 cut(s) 278
Hsp92II CATG 1 cut(s) 340
HspAI GCGC 3 cut(s) 135, 238, 316
KflI GGGWCCC 1 cut(s) 288
KpnI GGTACC 1 cut(s) 301
Kzo9I GATC 2 cut(s) 351, 396
LmnI GCTCC 2 cut(s) 333, 346
Lsp1109I GCAGC 2 cut(s) 16, 375
MaeII ACGT 1 cut(s) 278
MalI GATC 2 cut(s) 353, 398
MboI GATC 2 cut(s) 351, 396
MboII GAAGA 9 cut(s) 57, 60, 63, 66, 69, 72, 82, 178, 181
MflI RGATCY 1 cut(s) 396
MhlI GDGCHC 1 cut(s) 192
MnlI CCTC 9 cut(s) 35, 73, 124, 136, 154, 169, 172, 198, 336
MspA1I CMGCKG 1 cut(s) 200
MspI CCGG 4 cut(s) 104, 192, 302, 368
MspR9I CCNGG 3 cut(s) 192, 193, 302
MvnI CGCG 4 cut(s) 137, 149, 240, 318
MwoI GCNNNNNNNGC 3 cut(s) 13, 146, 237
NciI CCSGG 3 cut(s) 192, 193, 302
NdeII GATC 2 cut(s) 351, 396
NlaIII CATG 1 cut(s) 340
NlaIV GGNNCC 4 cut(s) 189, 289, 290, 299
NmeAIII GCCGAG 1 cut(s) 166
NruI TCGCGA 1 cut(s) 149
PaqCI CACCTGC 1 cut(s) 255
PcsI WCGNNNNNNNCGW 1 cut(s) 378
PkrI GCNGC 4 cut(s) 6, 139, 237, 390
PpuMI RGGWCCY 1 cut(s) 288
Psp5II RGGWCCY 1 cut(s) 288
PspN4I GGNNCC 4 cut(s) 189, 289, 290, 299
PspPI GGNCC 1 cut(s) 288
PspPPI RGGWCCY 1 cut(s) 288
PstI CTGCAG 2 cut(s) 6, 393
PsuI RGATCY 1 cut(s) 396
RruI TCGCGA 1 cut(s) 149
RsaI GTAC 3 cut(s) 223, 281, 299
RsaNI GTAC 3 cut(s) 222, 280, 298
SatI GCNGC 4 cut(s) 5, 138, 236, 389
Sau3AI GATC 2 cut(s) 351, 396
Sau96I GGNCC 1 cut(s) 288
ScrFI CCNGG 3 cut(s) 192, 193, 302
SduI GDGCHC 1 cut(s) 192
SfcI CTRYAG 2 cut(s) 2, 389
SinI GGWCC 1 cut(s) 288
SmaI CCCGGG 1 cut(s) 193
SsiI CCGC 7 cut(s) 137, 185, 200, 235, 270, 285, 318
StyD4I CCNGG 3 cut(s) 190, 191, 300
StyI CCWWGG 1 cut(s) 357
TaiI ACGT 1 cut(s) 281
TaqI TCGA 1 cut(s) 324
TaqII GACCGA 1 cut(s) 100
TauI GCSGC 2 cut(s) 140, 238
TseI GCWGC 2 cut(s) 4, 388
TspDTI ATGAA 1 cut(s) 34
TspGWI ACGGA 1 cut(s) 239
TspMI CCCGGG 1 cut(s) 191
VpaK11BI GGWCC 1 cut(s) 288
XmaI CCCGGG 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.