Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000837.1

Orthogroup ID

OG0011873

Physical Location & Seq

Genomic Coordinates Reverse (-)

414098 .. 418110

Gene Structure 4013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1578 bp

atgaatttcaggggtggtgccattctgttctttggcacaaagcgccatcacgacaagtggctgagggacactgagaattatgcaatcaagggttgctttgcaatgtctgagttagggcacggcagtaatgttcgaggaatcgaaacagtcaccacttacgattcaaaaactggagagtttgtcattaatactccttgtgaatctgctcagaagtattggattggaggggcagctaatcatgccacacacactattgtcttttcacaactcatcatatccgggaccaatcaaggcgtccatgcatttatagcccagatcagggatggaaatgggaacatctgtccaaacatccgtattgctgattgtggtcataaaattggtttaaatggtgttgataatggtcgaatatggtttgacaatgtccgaatccccagggaaaatttgttgaattcagtagcagatgtttccgcagaagggcaatatctgagtgcaataaaagacccagatcagagattcgcagcattcttggctccattgacatttggacgtgtaactatagcaaccagtgcaatttatacagcaaagataagtttagcaattgccataaggtactctttgacaaggcgggctttttcggttacaccaaacggaccggaagttctattgcttgattacccaagtcatcaacaccggctcttgcctctccttgcaaagacatatgctatgacttttgctgcaaatcacctaaagatgatctatgttaggaggactcctgagtcgagcaaaaccatccatgttgtttcaagtgcattcaaggctacacttacctggcataacatgcgaactcttcaggagtgccgtgaagcctgtggagggcaaggtctgaagactgaaaaccgcattggtaatctgaaaggtgaatttgatgtgcagtcgacttttgagggggacaataatgttctgatgcagcaggtcagcaaggcacttcttgcagagtttataacagctcagaagagaagtaaaccatttaaagctttgggattagaacatatgaataaaccttgccctgtcattccatctcaccttacaagttctactcttcagagtatcgaatttcagatggatgcattttgcttaagagagcgggatctactgaatcgctttgctgtggaagtgtcacaacgacaaaaacagggagaaagaaaagagtactcggttcttctgagttatcagcttgcagatgatttgggaagagctttctccgatcgaacaatattgcaaaccttcatcgatgtagaggcaactgtacctgctggttcactgaagaatgtcttagctacgttgaggaccttgtatgcattgatttgcttggaagaggatgtggcattcctccgatacgggtacttatcaacggataatgttgctgctgtgaggaaagaagtaagcagcctctgcagagagctacgaccccatgcacttgccttggtcagttcttttggcatccctgatgctttcctcggtcctatagcttttaactggattgagtcaaattcatggtcttcagttcagcagcactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003995 GO:0003997 GO:0005488 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0016042 GO:0016054 GO:0016491 GO:0016627 GO:0016634 GO:0019395 GO:0019752 GO:0030258 GO:0032787 GO:0033539 GO:0034440 GO:0036094 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0046395 GO:0048037 GO:0050660 GO:0050662 GO:0051791 GO:0055114 GO:0071704 GO:0072329 GO:0097159 GO:1901265 GO:1901363 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00071 ko00592 ko01040 ko01100 ko01110 ko01212 ko03320 ko04024 ko04146 map00071 map00592 map01040 map01100 map01110 map01212 map03320 map04024 map04146

Pfam Domains

Protein Families

ACOX Acyl-CoA_dh_1 Acyl-CoA_dh_M

Protein Analysis

525

Amino Acids

58.43

Weight (kDa)

8.8

Isoelectric Point (pI)

35.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acyl-CoA_dh_M	PF02770	32 - 141	1.8e-11	Acyl-CoA dehydrogenase, middle domain
Acyl-CoA_dh_1	PF00441	174 - 330	1.3e-10	Acyl-CoA dehydrogenase, C-terminal domain
ACOX_C_alpha1	PF22924	179 - 330	5.7e-42	Acyl-CoA oxidase, C-alpha1 domain
ACOX	PF01756	371 - 507	5.5e-19	Acyl-CoA oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011873)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06290 AT1G06310 AT3G06690
fragaria_vesca	FvH4_6g26900 FvH4_6g26900 FvH4_6g26900
malus_domestica	MD17G1234100.v1.1
prunus_persica	Prupe.3G127000_v2.0.a1
pyrus_communis	pycom17g23740
rosa_chinensis	RchiOBHm_Chr2g0128641
rosa_laevigata	RLG00000019014
rosa_multiflora	Rmu_sc0000837.1_g000086 Rmu_sc0003465.1_g000047
rosa_roxburghii	Rroxscaffold_2G00115420 Rroxscaffold_2G00115900
rosa_rugosa	Rorug02G0279600
rosa_samantha	Rh2DG357400
rosa_wichuraiana	Rw2G026890 Rw2G027150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1001
AasI	GACNNNNNNGTC	1 cut(s)	775
Acc36I	ACCTGC	2 cut(s)	961, 1318
AccB1I	GGYRCC	1 cut(s)	17
AccBSI	CCGCTC	1 cut(s)	1144
AccI	GTMKAC	1 cut(s)	935
AciI	CCGC	4 cut(s)	468, 625, 898, 1144
AclWI	GGATC	1 cut(s)	1155
AcsI	RAATTY	6 cut(s)	4, 439, 448, 920, 1112, 1549
AcuI	CTGAAG	5 cut(s)	833, 905, 1085, 1343, 1545
AcyI	GRCGYC	1 cut(s)	294
AfaI	GTAC	4 cut(s)	611, 1211, 1308, 1403
AfiI	CCNNNNNNNGG	4 cut(s)	318, 319, 474, 873
AflII	CTTAAG	1 cut(s)	1135
AflIII	ACRYGT	1 cut(s)	547
AgsI	TTSAA	4 cut(s)	165, 448, 804, 814
AjiI	CACGTC	1 cut(s)	548
AjnI	CCWGG	2 cut(s)	431, 827
AjuI	GAANNNNNNNTTGG	2 cut(s)	885, 917
AloI	GAACNNNNNNTCC	2 cut(s)	642, 674
AluBI	AGCT	8 cut(s)	233, 1007, 1034, 1234, 1256, 1337, 1462, 1529
AluI	AGCT	8 cut(s)	233, 1007, 1034, 1234, 1256, 1337, 1462, 1529
AlwI	GGATC	1 cut(s)	1155
AlwNI	CAGNNNCTG	1 cut(s)	1452
ApeKI	GCWGC	7 cut(s)	230, 518, 734, 967, 1424, 1446, 1570
ApoI	RAATTY	6 cut(s)	4, 439, 448, 920, 1112, 1549
ArsI	GACNNNNNNTTYG	2 cut(s)	1541, 1573
AseI	ATTAAT	1 cut(s)	186
AspLEI	GCGC	1 cut(s)	45
AspS9I	GGNCC	4 cut(s)	282, 650, 1347, 1520
AsuC2I	CCSGG	1 cut(s)	280
AsuHPI	GGTGA	4 cut(s)	142, 734, 929, 1073
AvaII	GGWCC	4 cut(s)	282, 650, 1347, 1520
BaeGI	GKGCMC	1 cut(s)	120
BanI	GGYRCC	1 cut(s)	17
BbsI	GAAGAC	2 cut(s)	893, 1551
BbvCI	CCTCAGC	1 cut(s)	62
BbvI	GCAGC	6 cut(s)	242, 530, 721, 979, 1411, 1458
BccI	CCATC	5 cut(s)	54, 317, 797, 1084, 1114
BceAI	ACGGC	2 cut(s)	136, 843
BciT130I	CCWGG	2 cut(s)	433, 829
BcnI	CCSGG	1 cut(s)	280
BfaI	CTAG	1 cut(s)	1576
BfmI	CTRYAG	3 cut(s)	555, 1453, 1524
BfoI	RGCGCY	1 cut(s)	46
BfrI	CTTAAG	1 cut(s)	1135
BfuAI	ACCTGC	2 cut(s)	961, 1318
BisI	GCNGC	7 cut(s)	231, 519, 735, 968, 1425, 1447, 1571
BlsI	GCNGC	7 cut(s)	232, 520, 736, 969, 1426, 1448, 1572
BmcAI	AGTACT	1 cut(s)	1211
Bme1390I	CCNGG	3 cut(s)	280, 433, 829
Bme18I	GGWCC	4 cut(s)	282, 650, 1347, 1520
BmgBI	CACGTC	1 cut(s)	548
BmgT120I	GGNCC	4 cut(s)	282, 650, 1347, 1520
BmiI	GGNNCC	3 cut(s)	19, 283, 531
BmrFI	CCNGG	3 cut(s)	280, 433, 829
BmsI	GCATC	4 cut(s)	954, 1114, 1498, 1509
BpiI	GAAGAC	2 cut(s)	893, 1551
BpmI	CTGGAG	1 cut(s)	192
Bpu10I	CCTNAGC	1 cut(s)	62
BpuMI	CCSGG	1 cut(s)	280
Bsa29I	ATCGAT	1 cut(s)	1290
BsaHI	GRCGYC	1 cut(s)	294
BsaJI	CCNNGG	4 cut(s)	431, 432, 1482, 1516
BsaWI	WCCGGW	1 cut(s)	652
BsaXI	ACNNNNNCTCC	2 cut(s)	165, 195
Bsc4I	CCNNNNNNNGG	4 cut(s)	318, 319, 474, 873
Bse118I	RCCGGY	1 cut(s)	690
Bse1I	ACTGG	3 cut(s)	175, 564, 1541
Bse3DI	GCAATG	1 cut(s)	108
BseBI	CCWGG	2 cut(s)	433, 829
BseCI	ATCGAT	1 cut(s)	1290
BseDI	CCNNGG	4 cut(s)	431, 432, 1482, 1516
BseGI	GGATG	6 cut(s)	328, 348, 789, 1129, 1384, 1500
BseLI	CCNNNNNNNGG	4 cut(s)	318, 319, 474, 873
BseMI	GCAATG	1 cut(s)	108
BseMII	CTCAG	8 cut(s)	53, 63, 99, 221, 476, 765, 1022, 1214
BseNI	ACTGG	3 cut(s)	175, 564, 1541
BseSI	GKGCMC	1 cut(s)	120
BseXI	GCAGC	6 cut(s)	242, 530, 721, 979, 1411, 1458
BsgI	GTGCAG	1 cut(s)	950
Bsh1285I	CGRYCG	1 cut(s)	1267
BshNI	GGYRCC	1 cut(s)	17
BshVI	ATCGAT	1 cut(s)	1290
BsiEI	CGRYCG	1 cut(s)	1267
BsiSI	CCGG	3 cut(s)	279, 653, 691
BslFI	GGGAC	3 cut(s)	80, 295, 962
BslI	CCNNNNNNNGG	4 cut(s)	318, 319, 474, 873
BsmFI	GGGAC	3 cut(s)	80, 295, 962
BsmI	GAATGC	3 cut(s)	521, 809, 1385
Bsp1286I	GDGCHC	1 cut(s)	120
Bsp143I	GATC	5 cut(s)	315, 505, 753, 1147, 1264
BspACI	CCGC	4 cut(s)	468, 625, 898, 1144
BspCNI	CTCAG	8 cut(s)	54, 64, 100, 220, 477, 766, 1021, 1215
BspDI	ATCGAT	1 cut(s)	1290
BspLI	GGNNCC	3 cut(s)	19, 283, 531
BspMAI	CTGCAG	1 cut(s)	1457
BspMI	ACCTGC	2 cut(s)	961, 1318
BspPI	GGATC	1 cut(s)	1155
BspQI	GCTCTTC	1 cut(s)	1246
BspT107I	GGYRCC	1 cut(s)	17
BspTI	CTTAAG	1 cut(s)	1135
BsrBI	CCGCTC	1 cut(s)	1144
BsrDI	GCAATG	1 cut(s)	108
BsrFI	RCCGGY	1 cut(s)	690
BsrI	ACTGG	3 cut(s)	175, 564, 1541
BssAI	RCCGGY	1 cut(s)	690
BssECI	CCNNGG	4 cut(s)	431, 432, 1482, 1516
BssMI	GATC	5 cut(s)	315, 505, 753, 1147, 1264
BssNI	GRCGYC	1 cut(s)	294
BssT1I	CCWWGG	1 cut(s)	1482
Bst2UI	CCWGG	2 cut(s)	433, 829
Bst4CI	ACNGT	2 cut(s)	148, 1306
Bst6I	CTCTTC	5 cut(s)	852, 1007, 1104, 1246, 1368
BstACI	GRCGYC	1 cut(s)	294
BstAFI	CTTAAG	1 cut(s)	1135
BstAPI	GCANNNNNTGC	4 cut(s)	566, 838, 989, 1452
BstC8I	GCNNGC	2 cut(s)	627, 1236
BstDEI	CTNAG	9 cut(s)	62, 72, 108, 207, 485, 774, 1008, 1223, 1333
BstF5I	GGATG	6 cut(s)	328, 348, 789, 1129, 1384, 1500
BstH2I	RGCGCY	1 cut(s)	46
BstHHI	GCGC	1 cut(s)	45
BstKTI	GATC	5 cut(s)	318, 508, 756, 1150, 1267
BstMBI	GATC	5 cut(s)	315, 505, 753, 1147, 1264
BstMCI	CGRYCG	1 cut(s)	1267
BstMWI	GCNNNNNNNGC	9 cut(s)	42, 239, 308, 527, 566, 815, 838, 989, 1452
BstNI	CCWGG	2 cut(s)	433, 829
BstNSI	RCATGY	1 cut(s)	841
BstSCI	CCNGG	3 cut(s)	278, 431, 827
BstSFI	CTRYAG	3 cut(s)	555, 1453, 1524
BstSLI	GKGCMC	1 cut(s)	120
BstV1I	GCAGC	6 cut(s)	242, 530, 721, 979, 1411, 1458
BstV2I	GAAGAC	2 cut(s)	893, 1551
BstX2I	RGATCY	1 cut(s)	1147
BstYI	RGATCY	1 cut(s)	1147
Bsu15I	ATCGAT	1 cut(s)	1290
BsuTUI	ATCGAT	1 cut(s)	1290
BtrI	CACGTC	1 cut(s)	548
BtsCI	GGATG	6 cut(s)	328, 348, 789, 1129, 1384, 1500
BtsIMutI	CAGTG	3 cut(s)	69, 571, 1319
BveI	ACCTGC	2 cut(s)	961, 1318
Cac8I	GCNNGC	2 cut(s)	627, 1236
CaiI	CAGNNNCTG	1 cut(s)	1452
CfoI	GCGC	1 cut(s)	45
Cfr10I	RCCGGY	1 cut(s)	690
Cfr13I	GGNCC	4 cut(s)	282, 650, 1347, 1520
ClaI	ATCGAT	1 cut(s)	1290
CpoI	CGGWCCG	1 cut(s)	650
CseI	GACGC	1 cut(s)	283
Csp6I	GTAC	4 cut(s)	610, 1210, 1307, 1402
CspI	CGGWCCG	1 cut(s)	650
CviAII	CATG	6 cut(s)	239, 299, 794, 838, 1472, 1554
CviQI	GTAC	4 cut(s)	610, 1210, 1307, 1402
DdeI	CTNAG	9 cut(s)	62, 72, 108, 207, 485, 774, 1008, 1223, 1333
DpnI	GATC	5 cut(s)	317, 507, 755, 1149, 1266
DpnII	GATC	5 cut(s)	315, 505, 753, 1147, 1264
DraI	TTTAAA	2 cut(s)	384, 1030
DrdI	GACNNNNNNGTC	1 cut(s)	775
DseDI	GACNNNNNNGTC	1 cut(s)	775
Eam1104I	CTCTTC	5 cut(s)	852, 1007, 1104, 1246, 1368
EarI	CTCTTC	5 cut(s)	852, 1007, 1104, 1246, 1368
Eco130I	CCWWGG	1 cut(s)	1482
Eco47I	GGWCC	4 cut(s)	282, 650, 1347, 1520
Eco57I	CTGAAG	5 cut(s)	833, 905, 1085, 1343, 1545
EcoO109I	RGGNCCY	1 cut(s)	1347
EcoRI	GAATTC	1 cut(s)	448
EcoRII	CCWGG	2 cut(s)	431, 827
EcoT14I	CCWWGG	1 cut(s)	1482
EcoT22I	ATGCAT	3 cut(s)	304, 1129, 1360
ErhI	CCWWGG	1 cut(s)	1482
FaeI	CATG	6 cut(s)	242, 302, 797, 841, 1475, 1557
FalI	AAGNNNNNCTT	8 cut(s)	80, 112, 598, 630, 613, 645, 1316, 1348
FaqI	GGGAC	3 cut(s)	80, 295, 962
FatI	CATG	6 cut(s)	238, 298, 793, 837, 1471, 1553
FauI	CCCGC	2 cut(s)	618, 1137
FauNDI	CATATG	2 cut(s)	718, 1050
FblI	GTMKAC	1 cut(s)	935
Fnu4HI	GCNGC	7 cut(s)	231, 519, 735, 968, 1425, 1447, 1571
FokI	GGATG	6 cut(s)	335, 335, 776, 1136, 1391, 1487
Fsp4HI	GCNGC	7 cut(s)	231, 519, 735, 968, 1425, 1447, 1571
FspBI	CTAG	1 cut(s)	1576
GlaI	GCGC	1 cut(s)	44
GluI	GCNGC	7 cut(s)	231, 519, 735, 968, 1425, 1447, 1571
GsuI	CTGGAG	1 cut(s)	192
HaeII	RGCGCY	1 cut(s)	46
HapII	CCGG	3 cut(s)	279, 653, 691
HgaI	GACGC	1 cut(s)	283
HhaI	GCGC	1 cut(s)	45
Hin1I	GRCGYC	1 cut(s)	294
Hin1II	CATG	6 cut(s)	242, 302, 797, 841, 1475, 1557
Hin6I	GCGC	1 cut(s)	43
HinP1I	GCGC	1 cut(s)	43
HincII	GTYRAC	1 cut(s)	936
HindII	GTYRAC	1 cut(s)	936
HindIII	AAGCTT	1 cut(s)	1032
HinfI	GANTC	9 cut(s)	138, 161, 200, 426, 513, 769, 776, 1156, 1544
HpaII	CCGG	3 cut(s)	279, 653, 691
HphI	GGTGA	4 cut(s)	142, 734, 929, 1073
Hpy166II	GTNNAC	3 cut(s)	936, 1022, 1319
Hpy188III	TCNNGA	3 cut(s)	50, 773, 851
Hpy8I	GTNNAC	3 cut(s)	936, 1022, 1319
HpyAV	CCTTC	2 cut(s)	467, 1294
HpyCH4III	ACNGT	2 cut(s)	148, 1306
HpyCH4IV	ACGT	2 cut(s)	547, 1340
HpyF10VI	GCNNNNNNNGC	9 cut(s)	42, 239, 308, 527, 566, 815, 838, 989, 1452
HpyF3I	CTNAG	9 cut(s)	62, 72, 108, 207, 485, 774, 1008, 1223, 1333
HpySE526I	ACGT	2 cut(s)	547, 1340
Hsp92I	GRCGYC	1 cut(s)	294
Hsp92II	CATG	6 cut(s)	242, 302, 797, 841, 1475, 1557
HspAI	GCGC	1 cut(s)	43
Kzo9I	GATC	5 cut(s)	315, 505, 753, 1147, 1264
LguI	GCTCTTC	1 cut(s)	1246
LmnI	GCTCC	1 cut(s)	535
Lsp1109I	GCAGC	6 cut(s)	242, 530, 721, 979, 1411, 1458
LweI	GCATC	4 cut(s)	954, 1114, 1498, 1509
MaeI	CTAG	1 cut(s)	1576
MaeII	ACGT	2 cut(s)	547, 1340
MaeIII	GTNAC	4 cut(s)	148, 550, 637, 1176
MalI	GATC	5 cut(s)	317, 507, 755, 1149, 1266
MbiI	CCGCTC	1 cut(s)	1144
MboI	GATC	5 cut(s)	315, 505, 753, 1147, 1264
MboII	GAAGA	9 cut(s)	839, 898, 1024, 1091, 1211, 1263, 1336, 1385, 1551
MfeI	CAATTG	1 cut(s)	597
MflI	RGATCY	1 cut(s)	1147
MhlI	GDGCHC	1 cut(s)	120
MlyI	GAGTC	3 cut(s)	763, 785, 1553
Mph1103I	ATGCAT	3 cut(s)	304, 1129, 1360
MseI	TTAA	5 cut(s)	186, 383, 1029, 1136, 1533
MspCI	CTTAAG	1 cut(s)	1135
MspI	CCGG	3 cut(s)	279, 653, 691
MspR9I	CCNGG	3 cut(s)	280, 433, 829
MunI	CAATTG	1 cut(s)	597
Mva1269I	GAATGC	3 cut(s)	521, 809, 1385
MvaI	CCWGG	2 cut(s)	433, 829
MwoI	GCNNNNNNNGC	9 cut(s)	42, 239, 308, 527, 566, 815, 838, 989, 1452
NciI	CCSGG	1 cut(s)	280
NdeI	CATATG	2 cut(s)	718, 1050
NdeII	GATC	5 cut(s)	315, 505, 753, 1147, 1264
NlaIII	CATG	6 cut(s)	242, 302, 797, 841, 1475, 1557
NlaIV	GGNNCC	3 cut(s)	19, 283, 531
NmuCI	GTSAC	2 cut(s)	148, 1176
NsiI	ATGCAT	3 cut(s)	304, 1129, 1360
NspI	RCATGY	1 cut(s)	841
PasI	CCCWGGG	1 cut(s)	432
PciSI	GCTCTTC	1 cut(s)	1246
PctI	GAATGC	3 cut(s)	521, 809, 1385
PfeI	GAWTC	6 cut(s)	138, 161, 200, 426, 513, 1156
PflFI	GACNNNGTC	1 cut(s)	419
PfoI	TCCNGGA	1 cut(s)	278
PkrI	GCNGC	7 cut(s)	232, 520, 736, 969, 1426, 1448, 1572
Ple19I	CGATCG	1 cut(s)	1267
PleI	GAGTC	3 cut(s)	763, 784, 1552
PpsI	GAGTC	3 cut(s)	763, 784, 1552
PpuMI	RGGWCCY	1 cut(s)	1347
PshBI	ATTAAT	1 cut(s)	186
PsiI	TTATAA	1 cut(s)	1001
Psp5II	RGGWCCY	1 cut(s)	1347
Psp6I	CCWGG	2 cut(s)	431, 827
PspGI	CCWGG	2 cut(s)	431, 827
PspN4I	GGNNCC	3 cut(s)	19, 283, 531
PspPI	GGNCC	4 cut(s)	282, 650, 1347, 1520
PspPPI	RGGWCCY	1 cut(s)	1347
PstI	CTGCAG	1 cut(s)	1457
PstNI	CAGNNNCTG	1 cut(s)	1452
PsuI	RGATCY	1 cut(s)	1147
PsyI	GACNNNGTC	1 cut(s)	419
PvuI	CGATCG	1 cut(s)	1267
RsaI	GTAC	4 cut(s)	611, 1211, 1308, 1403
RsaNI	GTAC	4 cut(s)	610, 1210, 1307, 1402
Rsr2I	CGGWCCG	1 cut(s)	650
RsrII	CGGWCCG	1 cut(s)	650
SalI	GTCGAC	1 cut(s)	934
SapI	GCTCTTC	1 cut(s)	1246
SaqAI	TTAA	5 cut(s)	186, 383, 1029, 1136, 1533
SatI	GCNGC	7 cut(s)	231, 519, 735, 968, 1425, 1447, 1571
Sau3AI	GATC	5 cut(s)	315, 505, 753, 1147, 1264
Sau96I	GGNCC	4 cut(s)	282, 650, 1347, 1520
ScaI	AGTACT	1 cut(s)	1211
SchI	GAGTC	3 cut(s)	763, 785, 1553
ScrFI	CCNGG	3 cut(s)	280, 433, 829
SduI	GDGCHC	1 cut(s)	120
SfaNI	GCATC	4 cut(s)	954, 1114, 1498, 1509
SfcI	CTRYAG	3 cut(s)	555, 1453, 1524
SinI	GGWCC	4 cut(s)	282, 650, 1347, 1520
SmlI	CTYRAG	1 cut(s)	1135
SmoI	CTYRAG	1 cut(s)	1135
SsiI	CCGC	4 cut(s)	468, 625, 898, 1144
SspI	AATATT	1 cut(s)	1275
SspMI	CTAG	1 cut(s)	1576
StyD4I	CCNGG	3 cut(s)	278, 431, 827
StyI	CCWWGG	1 cut(s)	1482
TaaI	ACNGT	2 cut(s)	148, 1306
TaiI	ACGT	2 cut(s)	550, 1343
TaqI	TCGA	8 cut(s)	133, 141, 403, 779, 935, 1110, 1267, 1290
TaqII	GACCGA	1 cut(s)	1508
TatI	WGTACW	1 cut(s)	1209
TfiI	GAWTC	6 cut(s)	138, 161, 200, 426, 513, 1156
Tru1I	TTAA	5 cut(s)	186, 383, 1029, 1136, 1533
Tru9I	TTAA	5 cut(s)	186, 383, 1029, 1136, 1533
TscAI	CASTG	3 cut(s)	76, 571, 1326
TseFI	GTSAC	2 cut(s)	148, 1176
TseI	GCWGC	7 cut(s)	230, 518, 734, 967, 1424, 1446, 1570
Tsp45I	GTSAC	2 cut(s)	148, 1176
TspDTI	ATGAA	4 cut(s)	17, 1067, 1276, 1542
TspGWI	ACGGA	3 cut(s)	341, 663, 1427
TspRI	CASTG	3 cut(s)	76, 571, 1326
Tth111I	GACNNNGTC	1 cut(s)	419
Vha464I	CTTAAG	1 cut(s)	1135
VpaK11BI	GGWCC	4 cut(s)	282, 650, 1347, 1520
VspI	ATTAAT	1 cut(s)	186
XapI	RAATTY	6 cut(s)	4, 439, 448, 920, 1112, 1549
XceI	RCATGY	1 cut(s)	841
XcmI	CCANNNNNNNNNTGG	1 cut(s)	320
XmiI	GTMKAC	1 cut(s)	935
XspI	CTAG	1 cut(s)	1576
ZrmI	AGTACT	1 cut(s)	1211
Zsp2I	ATGCAT	3 cut(s)	304, 1129, 1360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.