Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000863.1

Orthogroup ID

OG0009307

Physical Location & Seq

Genomic Coordinates Forward (+)

19208 .. 19738

Gene Structure 531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

atgtggcttcagacaaagcaggggatgagcactacaacctcatctatgagaggaagtgatgccaatgctgctatttattggttggcaaggatgcttgagggagggcaggagcctctgtacattgcgcgcaggcttgtgaggtttgccagcgaagatgtggggctggcggacccgttggcacataatcaagctgtggcttgttaccaagcttgtcactttattggaatgccagagtgcaatgtgattcttgcacagtgtgtggcttacttggctttggctccgaaaccggttactgtttataaagcaatgaatagtgcagcagaagtggtgaggagttcggttggacagaatgagggggtgcctcttcatctcaggaatgcaccgactaagctgatgaaggattttgggtatgggaaaggatatatatacactcctgacgatccctctgcagaacagagatttctaccgccatcacttgaaggttacaagtttctggattggccaatcagtaatgatactgatggacgataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000731 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006275 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010556 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030174 GO:0031323 GO:0031326 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0071897 GO:0080090 GO:0090304 GO:0090329 GO:1901360 GO:1901362 GO:1901576 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc_2 MgsA_C UBA

Protein Analysis

176

Amino Acids

19.39

Weight (kDa)

6.28

Isoelectric Point (pI)

44.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MgsA_C	PF12002	18 - 164	2.7e-55	MgsA AAA+ ATPase C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24290
fragaria_vesca	FvH4_5g33930 FvH4_5g33930
malus_domestica	MD03G1299000.v1.1
pyrus_communis	pycom03g23710
rosa_chinensis	RchiOBHm_Chr7g0233321
rosa_laevigata	RLG00000001279
rosa_multiflora	Rmu_sc0000863.1_g000006 Rmu_sc0000863.1_g000007 Rmu_sc0000863.1_g000049 Rmu_sc0003865.1_g000005 Rmu_sc0010461.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227410
rosa_rugosa	Rorug07G0279900 Rorug07G0279900
rosa_samantha	Rh7AG435800 Rh7BG408100 Rh7BG408500 Rh7CG455000 Rh7DG424500 Rh7DG424900
rosa_wichuraiana	Rw7G035840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	300
AccB1I	GGYRCC	1 cut(s)	358
AccII	CGCG	1 cut(s)	127
AciI	CCGC	2 cut(s)	167, 467
AclWI	GGATC	1 cut(s)	434
AcoI	YGGCCR	1 cut(s)	500
AdeI	CACNNNGTG	1 cut(s)	257
AfaI	GTAC	1 cut(s)	119
AgeI	ACCGGT	1 cut(s)	286
AgsI	TTSAA	1 cut(s)	479
AluBI	AGCT	3 cut(s)	191, 209, 391
AluI	AGCT	3 cut(s)	191, 209, 391
Alw21I	GWGCWC	1 cut(s)	32
AlwI	GGATC	1 cut(s)	434
AoxI	GGCC	1 cut(s)	500
ApeKI	GCWGC	2 cut(s)	68, 317
AsiGI	ACCGGT	1 cut(s)	286
AspLEI	GCGC	2 cut(s)	127, 129
AspS9I	GGNCC	1 cut(s)	169
AsuHPI	GGTGA	1 cut(s)	340
AvaII	GGWCC	1 cut(s)	169
BalI	TGGCCA	1 cut(s)	502
BanI	GGYRCC	1 cut(s)	358
Bbv12I	GWGCWC	1 cut(s)	32
BbvI	GCAGC	2 cut(s)	55, 329
BccI	CCATC	2 cut(s)	478, 515
BcgI	CGANNNNNNTGC	2 cut(s)	428, 462
BfmI	CTRYAG	1 cut(s)	447
BisI	GCNGC	2 cut(s)	69, 318
BlsI	GCNGC	2 cut(s)	70, 319
Bme18I	GGWCC	1 cut(s)	169
BmgT120I	GGNCC	1 cut(s)	169
BmiI	GGNNCC	4 cut(s)	111, 171, 279, 360
BmsI	GCATC	2 cut(s)	49, 81
BpuEI	CTTGAG	1 cut(s)	116
BsaWI	WCCGGW	1 cut(s)	286
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bse118I	RCCGGY	1 cut(s)	286
Bse3DI	GCAATG	3 cut(s)	120, 244, 312
BseGI	GGATG	2 cut(s)	30, 96
BseMI	GCAATG	3 cut(s)	120, 244, 312
BseMII	CTCAG	1 cut(s)	385
BsePI	GCGCGC	1 cut(s)	125
BseRI	GAGGAG	1 cut(s)	346
BseXI	GCAGC	2 cut(s)	55, 329
BsgI	GTGCAG	1 cut(s)	336
Bsh1236I	CGCG	1 cut(s)	127
BshFI	GGCC	1 cut(s)	502
BshNI	GGYRCC	1 cut(s)	358
BshTI	ACCGGT	1 cut(s)	286
BsiHKAI	GWGCWC	1 cut(s)	32
BsiSI	CCGG	1 cut(s)	287
BsmI	GAATGC	2 cut(s)	231, 382
BsnI	GGCC	1 cut(s)	502
Bsp1286I	GDGCHC	1 cut(s)	32
Bsp1407I	TGTACA	1 cut(s)	117
Bsp143I	GATC	1 cut(s)	439
BspACI	CCGC	2 cut(s)	167, 467
BspANI	GGCC	1 cut(s)	502
BspCNI	CTCAG	1 cut(s)	384
BspFNI	CGCG	1 cut(s)	127
BspLI	GGNNCC	4 cut(s)	111, 171, 279, 360
BspMAI	CTGCAG	1 cut(s)	451
BspPI	GGATC	1 cut(s)	434
BspT107I	GGYRCC	1 cut(s)	358
BsrDI	GCAATG	3 cut(s)	120, 244, 312
BsrFI	RCCGGY	1 cut(s)	286
BsrGI	TGTACA	1 cut(s)	117
BssAI	RCCGGY	1 cut(s)	286
BssHII	GCGCGC	1 cut(s)	125
BssMI	GATC	1 cut(s)	439
Bst4CI	ACNGT	2 cut(s)	255, 295
Bst6I	CTCTTC	1 cut(s)	369
BstAUI	TGTACA	1 cut(s)	117
BstC8I	GCNNGC	4 cut(s)	127, 131, 148, 165
BstDEI	CTNAG	2 cut(s)	371, 387
BstF5I	GGATG	2 cut(s)	30, 96
BstFNI	CGCG	1 cut(s)	127
BstHHI	GCGC	2 cut(s)	127, 129
BstKTI	GATC	1 cut(s)	442
BstMBI	GATC	1 cut(s)	439
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 269
BstSFI	CTRYAG	1 cut(s)	447
BstUI	CGCG	1 cut(s)	127
BstV1I	GCAGC	2 cut(s)	55, 329
BsuRI	GGCC	1 cut(s)	502
BtsCI	GGATG	2 cut(s)	30, 96
BtsIMutI	CAGTG	1 cut(s)	260
Cac8I	GCNNGC	4 cut(s)	127, 131, 148, 165
CfoI	GCGC	2 cut(s)	127, 129
Cfr10I	RCCGGY	1 cut(s)	286
Cfr13I	GGNCC	1 cut(s)	169
Csp6I	GTAC	1 cut(s)	118
CspAI	ACCGGT	1 cut(s)	286
CviQI	GTAC	1 cut(s)	118
DdeI	CTNAG	2 cut(s)	371, 387
DpnI	GATC	1 cut(s)	441
DpnII	GATC	1 cut(s)	439
DraIII	CACNNNGTG	1 cut(s)	257
EaeI	YGGCCR	1 cut(s)	500
Eam1104I	CTCTTC	1 cut(s)	369
EarI	CTCTTC	1 cut(s)	369
EciI	GGCGGA	1 cut(s)	182
Eco47I	GGWCC	1 cut(s)	169
FaiI	YATR	7 cut(s)	47, 183, 300, 411, 423, 425, 427
Fnu4HI	GCNGC	2 cut(s)	69, 318
FokI	GGATG	2 cut(s)	37, 103
Fsp4HI	GCNGC	2 cut(s)	69, 318
GlaI	GCGC	2 cut(s)	126, 128
GluI	GCNGC	2 cut(s)	69, 318
HaeIII	GGCC	1 cut(s)	502
HapII	CCGG	1 cut(s)	287
HhaI	GCGC	2 cut(s)	127, 129
Hin6I	GCGC	2 cut(s)	125, 127
HinP1I	GCGC	2 cut(s)	125, 127
HindIII	AAGCTT	1 cut(s)	207
HinfI	GANTC	1 cut(s)	244
HpaII	CCGG	1 cut(s)	287
HphI	GGTGA	1 cut(s)	340
Hpy188I	TCNGA	2 cut(s)	12, 282
Hpy188III	TCNNGA	3 cut(s)	373, 434, 494
HpyAV	CCTTC	2 cut(s)	391, 473
HpyCH4III	ACNGT	2 cut(s)	255, 295
HpyCH4V	TGCA	5 cut(s)	237, 251, 317, 380, 449
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 269
HpyF3I	CTNAG	2 cut(s)	371, 387
HspAI	GCGC	2 cut(s)	125, 127
Kzo9I	GATC	1 cut(s)	439
LmnI	GCTCC	2 cut(s)	109, 283
Lsp1109I	GCAGC	2 cut(s)	55, 329
LweI	GCATC	2 cut(s)	49, 81
MaeIII	GTNAC	4 cut(s)	200, 212, 289, 482
MalI	GATC	1 cut(s)	441
MboI	GATC	1 cut(s)	439
MboII	GAAGA	2 cut(s)	164, 356
MhlI	GDGCHC	1 cut(s)	32
MlsI	TGGCCA	1 cut(s)	502
MluNI	TGGCCA	1 cut(s)	502
MmeI	TCCRAC	1 cut(s)	322
Mox20I	TGGCCA	1 cut(s)	502
MscI	TGGCCA	1 cut(s)	502
Msp20I	TGGCCA	1 cut(s)	502
MspI	CCGG	1 cut(s)	287
Mva1269I	GAATGC	2 cut(s)	231, 382
MvnI	CGCG	1 cut(s)	127
MwoI	GCNNNNNNNGC	2 cut(s)	68, 269
NdeII	GATC	1 cut(s)	439
NlaIV	GGNNCC	4 cut(s)	111, 171, 279, 360
NmuCI	GTSAC	1 cut(s)	212
PauI	GCGCGC	1 cut(s)	125
PctI	GAATGC	2 cut(s)	231, 382
PfeI	GAWTC	1 cut(s)	244
PinAI	ACCGGT	1 cut(s)	286
PkrI	GCNGC	2 cut(s)	70, 319
PsiI	TTATAA	1 cut(s)	300
PspN4I	GGNNCC	4 cut(s)	111, 171, 279, 360
PspPI	GGNCC	1 cut(s)	169
PstI	CTGCAG	1 cut(s)	451
PteI	GCGCGC	1 cut(s)	125
RsaI	GTAC	1 cut(s)	119
RsaNI	GTAC	1 cut(s)	118
SatI	GCNGC	2 cut(s)	69, 318
Sau3AI	GATC	1 cut(s)	439
Sau96I	GGNCC	1 cut(s)	169
SduI	GDGCHC	1 cut(s)	32
SetI	ASST	6 cut(s)	41, 143, 193, 211, 393, 484
SfaNI	GCATC	2 cut(s)	49, 81
SfcI	CTRYAG	1 cut(s)	447
SinI	GGWCC	1 cut(s)	169
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
SsiI	CCGC	2 cut(s)	167, 467
TaaI	ACNGT	2 cut(s)	255, 295
TatI	WGTACW	1 cut(s)	117
TfiI	GAWTC	1 cut(s)	244
TscAI	CASTG	1 cut(s)	260
TseFI	GTSAC	1 cut(s)	212
TseI	GCWGC	2 cut(s)	68, 317
Tsp45I	GTSAC	1 cut(s)	212
TspDTI	ATGAA	3 cut(s)	323, 356, 410
TspRI	CASTG	1 cut(s)	260
VpaK11BI	GGWCC	1 cut(s)	169
XcmI	CCANNNNNNNNNTGG	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.