Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000909.1

Orthogroup ID

OG0005423

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 5244

Gene Structure 5244 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

gaaaaagagattatatttgcattgtcacagactgcttatggactgtgcttgttctcagggtattgggtctactttcttcgttttcgtccatatagaagttctgctcttttccccttcagagcaaagaataagaagaattatgatggggagctgttaaagatgtgtgagttgtttgctttgcaatcctgtgtgaaattgatccttcaggaaggacaaaattttgttcttttacagtgggcaacatattataaccaagctgtatatggatttgtggacaatttagggagcctggtggtgaggatggtgtttcttccttttgaagaaagtacctatgctacatttgcaaggtctgcatcaggaaaagacccagataaggacaagaggttgggaggtagccttacagaagcccttaagctggttttgttaataggtcttatatttatggcgtttggcccgagttatgcttattctctcatcagattggtgtatggtcaaaaatggagtgatggggaagcatcaacagccctgggatattattgcttttatattattgttttggctgtgaatggaacttctgaagcatttgtacatgcagttgccaagaagaaccaacttctgtggtcaaatcttccatctgttctgataacaattatatatgtggtactgaatatcctgctggtaaactccgctggcgcggttggcttaattttggcaaattcattaaatatgattttgagaatattatactctggggcattcatcaagcattacttccaggattcttcctcattttctttttacaaatgcttacctgaaggatggaaggtcttgctgttttcaggaataaccactatcatttctgagagaatatttctagacaggaagaatttctgggcgacttttgttgttcattttaccattggggtcgcttgcttctgcacttcggcatttgtcatatatcgtcatgagagatcccttatcaacaaaatcattcccatcaacaggattttcccaagcatcaacaaaattgtccgcttccgtgatcactcagactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0006869 GO:0008150 GO:0009987 GO:0010876 GO:0012505 GO:0016020 GO:0016043 GO:0031984 GO:0033036 GO:0034203 GO:0034204 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046836 GO:0051179 GO:0051234 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071840 GO:0097035 GO:0098827 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rft-1

Protein Analysis

351

Amino Acids

39.93

Weight (kDa)

9.29

Isoelectric Point (pI)

41.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rft-1	PF04506	4 - 331	2.8e-88	Rft protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005423)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07630 AT5G07630
fragaria_vesca	FvH4_3g41750 FvH4_3g41750 FvH4_3g41750 FvH4_3g41750 FvH4_3g41750 FvH4_3g41750 FvH4_3g41750
malus_domestica	MD11G1042200.v1.1
prunus_persica	Prupe.6G033300_v2.0.a1 Prupe.6G033300_v2.0.a1 Prupe.6G033300_v2.0.a1 Prupe.6G033300_v2.0.a1 Prupe.6G033300_v2.0.a1
pyrus_communis	pycom11g03630
rosa_chinensis	RchiOBHm_Chr5g0074831
rosa_laevigata	RLG00000036509
rosa_multiflora	Rmu_sc0000909.1_g000001 Rmu_sc0003945.1_g000001 Rmu_sc0005365.1_g000010
rosa_roxburghii	Rroxscaffold_1G00006740
rosa_rugosa	Rorug05G0434700 Rorug05G0434800
rosa_samantha	Rh5AG492100 Rh5BG513500 Rh5CG537200 Rh5DG525600
rosa_wichuraiana	Rw5G045590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	249
AccI	GTMKAC	1 cut(s)	69
AccII	CGCG	1 cut(s)	695
AciI	CCGC	3 cut(s)	687, 695, 1033
AclWI	GGATC	2 cut(s)	193, 966
AcsI	RAATTY	3 cut(s)	217, 715, 886
AcuI	CTGAAG	4 cut(s)	100, 188, 597, 834
AfaI	GTAC	3 cut(s)	328, 588, 663
AfiI	CCNNNNNNNGG	3 cut(s)	373, 415, 1002
AflII	CTTAAG	1 cut(s)	410
AgsI	TTSAA	1 cut(s)	320
AjnI	CCWGG	3 cut(s)	288, 525, 774
AluBI	AGCT	3 cut(s)	151, 257, 415
AluI	AGCT	3 cut(s)	151, 257, 415
AlwI	GGATC	2 cut(s)	193, 966
Ama87I	CYCGRG	1 cut(s)	454
AoxI	GGCC	1 cut(s)	451
ApoI	RAATTY	3 cut(s)	217, 715, 886
Asp700I	GAANNNNTTC	1 cut(s)	887
AspLEI	GCGC	1 cut(s)	695
AspS9I	GGNCC	1 cut(s)	452
AsuHPI	GGTGA	1 cut(s)	307
AvaI	CYCGRG	1 cut(s)	454
BarI	GAAGNNNNNNTAC	2 cut(s)	570, 602
BccI	CCATC	6 cut(s)	137, 295, 500, 640, 813, 1004
BciT130I	CCWGG	3 cut(s)	290, 527, 776
BclI	TGATCA	1 cut(s)	1042
BfaI	CTAG	1 cut(s)	875
BfrI	CTTAAG	1 cut(s)	410
Bme1390I	CCNGG	3 cut(s)	290, 527, 776
BmeT110I	CYCGRG	1 cut(s)	454
BmgT120I	GGNCC	1 cut(s)	452
BmiI	GGNNCC	1 cut(s)	287
BmrFI	CCNGG	3 cut(s)	290, 527, 776
BmsI	GCATC	3 cut(s)	362, 524, 1026
BsaJI	CCNNGG	2 cut(s)	525, 526
Bsc4I	CCNNNNNNNGG	3 cut(s)	373, 415, 1002
BseBI	CCWGG	3 cut(s)	290, 527, 776
BseDI	CCNNGG	2 cut(s)	525, 526
BseGI	GGATG	2 cut(s)	306, 824
BseLI	CCNNNNNNNGG	3 cut(s)	373, 415, 1002
BseMII	CTCAG	2 cut(s)	69, 852
BsgI	GTGCAG	1 cut(s)	922
Bsh1236I	CGCG	1 cut(s)	695
BshFI	GGCC	1 cut(s)	453
BsiHKCI	CYCGRG	1 cut(s)	454
BslI	CCNNNNNNNGG	3 cut(s)	373, 415, 1002
BsmI	GAATGC	1 cut(s)	755
BsnI	GGCC	1 cut(s)	453
BsoBI	CYCGRG	1 cut(s)	454
Bsp1407I	TGTACA	1 cut(s)	586
Bsp143I	GATC	3 cut(s)	198, 971, 1042
BspACI	CCGC	3 cut(s)	687, 695, 1033
BspANI	GGCC	1 cut(s)	453
BspCNI	CTCAG	2 cut(s)	68, 853
BspFNI	CGCG	1 cut(s)	695
BspHI	TCATGA	1 cut(s)	964
BspLI	GGNNCC	1 cut(s)	287
BspPI	GGATC	2 cut(s)	193, 966
BspTI	CTTAAG	1 cut(s)	410
BsrGI	TGTACA	1 cut(s)	586
BssECI	CCNNGG	2 cut(s)	525, 526
BssMI	GATC	3 cut(s)	198, 971, 1042
Bst2UI	CCWGG	3 cut(s)	290, 527, 776
Bst4CI	ACNGT	2 cut(s)	45, 234
BstAFI	CTTAAG	1 cut(s)	410
BstAPI	GCANNNNNTGC	1 cut(s)	350
BstAUI	TGTACA	1 cut(s)	586
BstC8I	GCNNGC	2 cut(s)	691, 931
BstDEI	CTNAG	3 cut(s)	55, 861, 1048
BstF5I	GGATG	2 cut(s)	306, 824
BstFNI	CGCG	1 cut(s)	695
BstHHI	GCGC	1 cut(s)	695
BstKTI	GATC	3 cut(s)	201, 974, 1045
BstMBI	GATC	3 cut(s)	198, 971, 1042
BstMWI	GCNNNNNNNGC	4 cut(s)	341, 350, 521, 699
BstNI	CCWGG	3 cut(s)	290, 527, 776
BstNSI	RCATGY	1 cut(s)	593
BstSCI	CCNGG	3 cut(s)	288, 525, 774
BstUI	CGCG	1 cut(s)	695
BstX2I	RGATCY	1 cut(s)	971
BstYI	RGATCY	1 cut(s)	971
BsuRI	GGCC	1 cut(s)	453
BtsCI	GGATG	2 cut(s)	306, 824
BtsIMutI	CAGTG	1 cut(s)	239
Cac8I	GCNNGC	2 cut(s)	691, 931
CciI	TCATGA	1 cut(s)	964
CfoI	GCGC	1 cut(s)	695
Cfr13I	GGNCC	1 cut(s)	452
Csp6I	GTAC	3 cut(s)	327, 587, 662
CspCI	CAANNNNNGTGG	2 cut(s)	599, 634
CviAII	CATG	2 cut(s)	590, 965
CviQI	GTAC	3 cut(s)	327, 587, 662
DdeI	CTNAG	3 cut(s)	55, 861, 1048
DpnI	GATC	3 cut(s)	200, 973, 1044
DpnII	GATC	3 cut(s)	198, 971, 1042
Eco57I	CTGAAG	4 cut(s)	100, 188, 597, 834
Eco88I	CYCGRG	1 cut(s)	454
EcoRII	CCWGG	3 cut(s)	288, 525, 774
FaeI	CATG	2 cut(s)	593, 968
FalI	AAGNNNNNCTT	2 cut(s)	755, 787
FatI	CATG	2 cut(s)	589, 964
FbaI	TGATCA	1 cut(s)	1042
FblI	GTMKAC	1 cut(s)	69
FokI	GGATG	2 cut(s)	313, 831
FspBI	CTAG	1 cut(s)	875
GlaI	GCGC	1 cut(s)	694
HaeIII	GGCC	1 cut(s)	453
HhaI	GCGC	1 cut(s)	695
Hin1II	CATG	2 cut(s)	593, 968
Hin6I	GCGC	1 cut(s)	693
HinP1I	GCGC	1 cut(s)	693
HinfI	GANTC	1 cut(s)	779
HphI	GGTGA	1 cut(s)	307
Hpy166II	GTNNAC	3 cut(s)	70, 274, 682
Hpy188I	TCNGA	6 cut(s)	119, 479, 577, 642, 862, 1051
Hpy188III	TCNNGA	5 cut(s)	206, 357, 840, 875, 965
Hpy8I	GTNNAC	3 cut(s)	70, 274, 682
HpyAV	CCTTC	5 cut(s)	124, 203, 212, 809, 817
HpyCH4III	ACNGT	2 cut(s)	45, 234
HpyCH4V	TGCA	6 cut(s)	20, 181, 344, 353, 593, 939
HpyF10VI	GCNNNNNNNGC	4 cut(s)	341, 350, 521, 699
HpyF3I	CTNAG	3 cut(s)	55, 861, 1048
Hsp92II	CATG	2 cut(s)	593, 968
HspAI	GCGC	1 cut(s)	693
Ksp22I	TGATCA	1 cut(s)	1042
Kzo9I	GATC	3 cut(s)	198, 971, 1042
LmnI	GCTCC	2 cut(s)	148, 285
LweI	GCATC	3 cut(s)	362, 524, 1026
MaeI	CTAG	1 cut(s)	875
MaeIII	GTNAC	1 cut(s)	24
MalI	GATC	3 cut(s)	200, 973, 1044
MboI	GATC	3 cut(s)	198, 971, 1042
MboII	GAAGA	8 cut(s)	68, 145, 302, 332, 616, 620, 774, 895
MflI	RGATCY	1 cut(s)	971
MluCI	AATT	9 cut(s)	136, 194, 217, 277, 648, 705, 715, 886, 1026
MnlI	CCTC	4 cut(s)	291, 375, 383, 796
MroXI	GAANNNNTTC	1 cut(s)	887
MseI	TTAA	5 cut(s)	155, 411, 425, 704, 722
MspA1I	CMGCKG	1 cut(s)	689
MspCI	CTTAAG	1 cut(s)	410
MspR9I	CCNGG	3 cut(s)	290, 527, 776
Mva1269I	GAATGC	1 cut(s)	755
MvaI	CCWGG	3 cut(s)	290, 527, 776
MvnI	CGCG	1 cut(s)	695
MwoI	GCNNNNNNNGC	4 cut(s)	341, 350, 521, 699
NdeII	GATC	3 cut(s)	198, 971, 1042
NlaIII	CATG	2 cut(s)	593, 968
NlaIV	GGNNCC	1 cut(s)	287
NmuCI	GTSAC	1 cut(s)	24
NspI	RCATGY	1 cut(s)	593
PagI	TCATGA	1 cut(s)	964
PasI	CCCWGGG	1 cut(s)	526
PctI	GAATGC	1 cut(s)	755
PdmI	GAANNNNTTC	1 cut(s)	887
PfeI	GAWTC	1 cut(s)	779
PfoI	TCCNGGA	1 cut(s)	774
PsiI	TTATAA	1 cut(s)	249
Psp6I	CCWGG	3 cut(s)	288, 525, 774
PspGI	CCWGG	3 cut(s)	288, 525, 774
PspN4I	GGNNCC	1 cut(s)	287
PspPI	GGNCC	1 cut(s)	452
PsuI	RGATCY	1 cut(s)	971
RsaI	GTAC	3 cut(s)	328, 588, 663
RsaNI	GTAC	3 cut(s)	327, 587, 662
SaqAI	TTAA	5 cut(s)	155, 411, 425, 704, 722
Sau3AI	GATC	3 cut(s)	198, 971, 1042
Sau96I	GGNCC	1 cut(s)	452
ScrFI	CCNGG	3 cut(s)	290, 527, 776
SfaNI	GCATC	3 cut(s)	362, 524, 1026
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
Sse9I	AATT	9 cut(s)	136, 194, 217, 277, 648, 705, 715, 886, 1026
SsiI	CCGC	3 cut(s)	687, 695, 1033
SspI	AATATT	2 cut(s)	741, 870
SspMI	CTAG	1 cut(s)	875
StyD4I	CCNGG	3 cut(s)	288, 525, 774
TaaI	ACNGT	2 cut(s)	45, 234
TasI	AATT	9 cut(s)	136, 194, 217, 277, 648, 705, 715, 886, 1026
TatI	WGTACW	1 cut(s)	586
TfiI	GAWTC	1 cut(s)	779
Tru1I	TTAA	5 cut(s)	155, 411, 425, 704, 722
Tru9I	TTAA	5 cut(s)	155, 411, 425, 704, 722
TscAI	CASTG	1 cut(s)	239
TseFI	GTSAC	1 cut(s)	24
Tsp45I	GTSAC	1 cut(s)	24
TspDTI	ATGAA	3 cut(s)	708, 748, 899
TspGWI	ACGGA	1 cut(s)	1028
TspRI	CASTG	1 cut(s)	239
Vha464I	CTTAAG	1 cut(s)	410
XapI	RAATTY	3 cut(s)	217, 715, 886
XbaI	TCTAGA	1 cut(s)	874
XceI	RCATGY	1 cut(s)	593
XcmI	CCANNNNNNNNNTGG	1 cut(s)	260
XmiI	GTMKAC	1 cut(s)	69
XmnI	GAANNNNTTC	1 cut(s)	887
XspI	CTAG	1 cut(s)	875

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.