Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001035.1

Orthogroup ID

OG0015747

Physical Location & Seq

Genomic Coordinates Reverse (-)

162175 .. 163698

Gene Structure 1524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

atgatggaaaatgtcacattagagtctgaaatgataaaaagacacagacctccagaagcagttccctaccggaggacctcgcccacacctgagcttactccgatctcttcgttttcatcactaacggcgaagccgatatctgctcctacaatagcgcctctgatttgttatccaaaatcagaaacaggagaccgcaaaaataagccaagactccaagagaagagttcctatgactgtgccgacgaagtcgagtttcgacgaaaggaaaccctagccggctgtcaccacctccacgctgcagtcttgctgaggtcctccactaaatgccctctcttccacttgagagttaagagacagcaacaacatcgccatttagaacgtgatactaagcaacaaaggatggtctctgatcttgaagcaagagaacgagctgcctttgctccagacccagcagccacagaaagagaagaagaggagagaatttttaggaaacttgctgaagaggtttcgagaatacgtccaatgcatgcgagtaaaagggcgcctactgcttcagttcccaaaaaagagaatgggagagttgggaaggagagtgtgggtggtgctgagttgggaagaatagaaaaaacgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ RRM_1

Protein Analysis

210

Amino Acids

23.9

Weight (kDa)

9.63

Isoelectric Point (pI)

63.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015747)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0493811
rosa_laevigata	RLG00000012914 RLG00000019721 RLG00000022619 RLG00000022927 RLG00000025063 RLG00000036784
rosa_multiflora	Rmu_sc0001035.1_g000033 Rmu_sc0019527.1_g000001
rosa_rugosa	Rorug02G0255200
rosa_samantha	Rh3AG072100 Rh3BG074000 Rh3BG322000 Rh5AG212100 Rh5BG211300 Rh7CG103800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	541
AciI	CCGC	1 cut(s)	193
AcsI	RAATTY	1 cut(s)	480
AcuI	CTGAAG	2 cut(s)	519, 537
AcyI	GRCGYC	1 cut(s)	542
AfiI	CCNNNNNNNGG	1 cut(s)	72
AgsI	TTSAA	1 cut(s)	416
AluBI	AGCT	2 cut(s)	94, 431
AluI	AGCT	2 cut(s)	94, 431
Alw26I	GTCTC	3 cut(s)	183, 346, 409
ApeKI	GCWGC	3 cut(s)	296, 431, 452
ApoI	RAATTY	1 cut(s)	480
Asp700I	GAANNNNTTC	1 cut(s)	60
AspLEI	GCGC	2 cut(s)	157, 544
AspS9I	GGNCC	2 cut(s)	75, 312
AsuHPI	GGTGA	1 cut(s)	275
AvaII	GGWCC	2 cut(s)	75, 312
BanI	GGYRCC	1 cut(s)	541
BbvCI	CCTCAGC	1 cut(s)	308
BbvI	GCAGC	3 cut(s)	283, 418, 464
BccI	CCATC	1 cut(s)	394
BceAI	ACGGC	1 cut(s)	141
BcgI	CGANNNNNNTGC	2 cut(s)	347, 381
BcoDI	GTCTC	3 cut(s)	183, 346, 409
BfaI	CTAG	1 cut(s)	272
BfmI	CTRYAG	1 cut(s)	297
BfoI	RGCGCY	2 cut(s)	158, 545
BisI	GCNGC	3 cut(s)	297, 432, 453
BlsI	GCNGC	3 cut(s)	298, 433, 454
Bme18I	GGWCC	2 cut(s)	75, 312
BmgT120I	GGNCC	2 cut(s)	75, 312
BmiI	GGNNCC	1 cut(s)	543
BpmI	CTGGAG	2 cut(s)	36, 426
Bpu10I	CCTNAGC	2 cut(s)	90, 308
BpuEI	CTTGAG	1 cut(s)	361
BsaHI	GRCGYC	1 cut(s)	542
BsaI	GGTCTC	2 cut(s)	183, 409
BsaWI	WCCGGW	1 cut(s)	69
Bsc4I	CCNNNNNNNGG	1 cut(s)	72
Bse118I	RCCGGY	1 cut(s)	275
BseGI	GGATG	1 cut(s)	405
BseLI	CCNNNNNNNGG	1 cut(s)	72
BseMII	CTCAG	3 cut(s)	81, 299, 597
BseRI	GAGGAG	1 cut(s)	488
BseXI	GCAGC	3 cut(s)	283, 418, 464
BseYI	CCCAGC	1 cut(s)	448
BshNI	GGYRCC	1 cut(s)	541
BsiSI	CCGG	2 cut(s)	70, 276
BslI	CCNNNNNNNGG	1 cut(s)	72
BsmAI	GTCTC	3 cut(s)	183, 346, 409
Bso31I	GGTCTC	2 cut(s)	183, 409
Bsp143I	GATC	2 cut(s)	102, 409
BspACI	CCGC	1 cut(s)	193
BspCNI	CTCAG	3 cut(s)	82, 300, 598
BspLI	GGNNCC	1 cut(s)	543
BspMAI	CTGCAG	1 cut(s)	301
BspT107I	GGYRCC	1 cut(s)	541
BspTNI	GGTCTC	2 cut(s)	183, 409
BsrFI	RCCGGY	1 cut(s)	275
BssAI	RCCGGY	1 cut(s)	275
BssMI	GATC	2 cut(s)	102, 409
BssNI	GRCGYC	1 cut(s)	542
Bst4CI	ACNGT	1 cut(s)	236
Bst6I	CTCTTC	5 cut(s)	112, 215, 338, 465, 495
BstACI	GRCGYC	1 cut(s)	542
BstC8I	GCNNGC	2 cut(s)	277, 528
BstDEI	CTNAG	4 cut(s)	90, 308, 387, 606
BstENI	CCTNNNNNAGG	1 cut(s)	70
BstF5I	GGATG	1 cut(s)	405
BstH2I	RGCGCY	2 cut(s)	158, 545
BstHHI	GCGC	2 cut(s)	157, 544
BstKTI	GATC	2 cut(s)	105, 412
BstMAI	GTCTC	3 cut(s)	183, 346, 409
BstMBI	GATC	2 cut(s)	102, 409
BstMWI	GCNNNNNNNGC	2 cut(s)	437, 548
BstNSI	RCATGY	1 cut(s)	530
BstSFI	CTRYAG	1 cut(s)	297
BstV1I	GCAGC	3 cut(s)	283, 418, 464
BtgZI	GCGATG	1 cut(s)	350
BtsCI	GGATG	1 cut(s)	405
Cac8I	GCNNGC	2 cut(s)	277, 528
CfoI	GCGC	2 cut(s)	157, 544
Cfr10I	RCCGGY	1 cut(s)	275
Cfr13I	GGNCC	2 cut(s)	75, 312
CviAII	CATG	1 cut(s)	527
CviJI	RGCY	7 cut(s)	94, 133, 205, 275, 279, 431, 455
CviKI_1	RGCY	7 cut(s)	94, 133, 205, 275, 279, 431, 455
DdeI	CTNAG	4 cut(s)	90, 308, 387, 606
DinI	GGCGCC	1 cut(s)	543
DpnI	GATC	2 cut(s)	104, 411
DpnII	GATC	2 cut(s)	102, 409
Eam1104I	CTCTTC	5 cut(s)	112, 215, 338, 465, 495
EarI	CTCTTC	5 cut(s)	112, 215, 338, 465, 495
Eco31I	GGTCTC	2 cut(s)	183, 409
Eco32I	GATATC	1 cut(s)	138
Eco47I	GGWCC	2 cut(s)	75, 312
Eco57I	CTGAAG	2 cut(s)	519, 537
EcoNI	CCTNNNNNAGG	1 cut(s)	70
EcoO109I	RGGNCCY	2 cut(s)	75, 312
EcoRV	GATATC	1 cut(s)	138
EcoT22I	ATGCAT	1 cut(s)	528
EgeI	GGCGCC	1 cut(s)	543
EheI	GGCGCC	1 cut(s)	543
FaeI	CATG	1 cut(s)	530
FaiI	YATR	2 cut(s)	231, 528
FatI	CATG	1 cut(s)	526
Fnu4HI	GCNGC	3 cut(s)	297, 432, 453
FokI	GGATG	1 cut(s)	412
Fsp4HI	GCNGC	3 cut(s)	297, 432, 453
FspBI	CTAG	1 cut(s)	272
GlaI	GCGC	2 cut(s)	156, 543
GluI	GCNGC	3 cut(s)	297, 432, 453
GsaI	CCCAGC	1 cut(s)	452
GsuI	CTGGAG	2 cut(s)	36, 426
HaeII	RGCGCY	2 cut(s)	158, 545
HapII	CCGG	2 cut(s)	70, 276
HhaI	GCGC	2 cut(s)	157, 544
Hin1I	GRCGYC	1 cut(s)	542
Hin1II	CATG	1 cut(s)	530
Hin6I	GCGC	2 cut(s)	155, 542
HinP1I	GCGC	2 cut(s)	155, 542
HinfI	GANTC	2 cut(s)	23, 210
HpaII	CCGG	2 cut(s)	70, 276
HphI	GGTGA	1 cut(s)	275
Hpy188I	TCNGA	5 cut(s)	28, 102, 162, 181, 409
Hpy188III	TCNNGA	4 cut(s)	53, 413, 443, 510
Hpy99I	CGWCG	2 cut(s)	245, 261
HpyAV	CCTTC	1 cut(s)	580
HpyCH4III	ACNGT	1 cut(s)	236
HpyCH4IV	ACGT	3 cut(s)	379, 517, 629
HpyCH4V	TGCA	2 cut(s)	299, 526
HpyF10VI	GCNNNNNNNGC	2 cut(s)	437, 548
HpyF3I	CTNAG	4 cut(s)	90, 308, 387, 606
HpySE526I	ACGT	3 cut(s)	379, 517, 629
Hsp92I	GRCGYC	1 cut(s)	542
Hsp92II	CATG	1 cut(s)	530
HspAI	GCGC	2 cut(s)	155, 542
KasI	GGCGCC	1 cut(s)	541
KroI	GCCGGC	1 cut(s)	275
KroNI	GCCGGC	1 cut(s)	277
Kzo9I	GATC	2 cut(s)	102, 409
LmnI	GCTCC	2 cut(s)	148, 445
LpnPI	CCDG	7 cut(s)	66, 83, 102, 171, 289, 456, 462
Lsp1109I	GCAGC	3 cut(s)	283, 418, 464
MaeI	CTAG	1 cut(s)	272
MaeII	ACGT	3 cut(s)	379, 517, 629
MaeIII	GTNAC	2 cut(s)	13, 281
MalI	GATC	2 cut(s)	104, 411
MboI	GATC	2 cut(s)	102, 409
MboII	GAAGA	7 cut(s)	99, 232, 325, 479, 482, 512, 627
MluCI	AATT	1 cut(s)	480
Mly113I	GGCGCC	1 cut(s)	542
MlyI	GAGTC	2 cut(s)	32, 204
Mph1103I	ATGCAT	1 cut(s)	528
MroNI	GCCGGC	1 cut(s)	275
MroXI	GAANNNNTTC	1 cut(s)	60
MseI	TTAA	1 cut(s)	348
MspI	CCGG	2 cut(s)	70, 276
MwoI	GCNNNNNNNGC	2 cut(s)	437, 548
NaeI	GCCGGC	1 cut(s)	277
NarI	GGCGCC	1 cut(s)	542
NdeII	GATC	2 cut(s)	102, 409
NgoMIV	GCCGGC	1 cut(s)	275
NlaIII	CATG	1 cut(s)	530
NlaIV	GGNNCC	1 cut(s)	543
NmuCI	GTSAC	2 cut(s)	13, 281
NsiI	ATGCAT	1 cut(s)	528
NspI	RCATGY	1 cut(s)	530
PaeI	GCATGC	1 cut(s)	530
PcsI	WCGNNNNNNNCGW	1 cut(s)	131
PdiI	GCCGGC	1 cut(s)	277
PdmI	GAANNNNTTC	1 cut(s)	60
PflFI	GACNNNGTC	1 cut(s)	245
PkrI	GCNGC	3 cut(s)	298, 433, 454
PleI	GAGTC	2 cut(s)	31, 204
PluTI	GGCGCC	1 cut(s)	545
PpsI	GAGTC	2 cut(s)	31, 204
PpuMI	RGGWCCY	2 cut(s)	75, 312
Psp5II	RGGWCCY	2 cut(s)	75, 312
PspFI	CCCAGC	1 cut(s)	448
PspN4I	GGNNCC	1 cut(s)	543
PspPI	GGNCC	2 cut(s)	75, 312
PspPPI	RGGWCCY	2 cut(s)	75, 312
PstI	CTGCAG	1 cut(s)	301
PsyI	GACNNNGTC	1 cut(s)	245
SaqAI	TTAA	1 cut(s)	348
SatI	GCNGC	3 cut(s)	297, 432, 453
Sau3AI	GATC	2 cut(s)	102, 409
Sau96I	GGNCC	2 cut(s)	75, 312
SchI	GAGTC	2 cut(s)	32, 204
SfcI	CTRYAG	1 cut(s)	297
SfoI	GGCGCC	1 cut(s)	543
SinI	GGWCC	2 cut(s)	75, 312
SmlI	CTYRAG	1 cut(s)	340
SmoI	CTYRAG	1 cut(s)	340
SphI	GCATGC	1 cut(s)	530
Sse9I	AATT	1 cut(s)	480
SsiI	CCGC	1 cut(s)	193
SspDI	GGCGCC	1 cut(s)	541
SspMI	CTAG	1 cut(s)	272
TaaI	ACNGT	1 cut(s)	236
TaiI	ACGT	3 cut(s)	382, 520, 632
TaqI	TCGA	3 cut(s)	249, 256, 509
TasI	AATT	1 cut(s)	480
Tru1I	TTAA	1 cut(s)	348
Tru9I	TTAA	1 cut(s)	348
TseFI	GTSAC	2 cut(s)	13, 281
TseI	GCWGC	3 cut(s)	296, 431, 452
Tsp45I	GTSAC	2 cut(s)	13, 281
TspDTI	ATGAA	1 cut(s)	105
Tth111I	GACNNNGTC	1 cut(s)	245
VpaK11BI	GGWCC	2 cut(s)	75, 312
XagI	CCTNNNNNAGG	1 cut(s)	70
XapI	RAATTY	1 cut(s)	480
XceI	RCATGY	1 cut(s)	530
XmnI	GAANNNNTTC	1 cut(s)	60
XspI	CTAG	1 cut(s)	272
Zsp2I	ATGCAT	1 cut(s)	528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.