Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001157.1

Orthogroup ID

OG0004366

Physical Location & Seq

Genomic Coordinates Forward (+)

30871 .. 39161

Gene Structure 8291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3411 bp

atgggaactccaaagaggaagaagaagcagaccccagagacccaattccactcttccctcactttctgctcaaggaacaaggacttaagcagcgcaatctcgctgtacgaatccgctgtttcgcagaatacgcggctcaaccagcaccattttaacaccctactctacctctgctctaactctgtcactgatccgtccctgaagcaattggccttggaatatggcttccgcgtgtttgatcacatgtcgtcgatcgaagtcctccccaacgaggccacgatcaccgccgttgctcggctcgctgcggcgaaaggtgatggtgattatgcttttgagctggtgaagggtatggagaagtataatgtattgccgaggttgcgcacttgcgatccggcattgtttggcttttgtgagaaactggaggctgataaggcgtatgaggtggaagagtatatgaataaggtgggagtgagtgtagaagagcctgagattgcagccttattaaaggtgagtgcagagacaggaagaggggagagggtttatgattacttgcacaagttgaggaatgctgtgaggtgtgttcatgaatcgacggccaagatcattgaggattggtatcgtgatggaagggctagtcaagtgggtgaggtgaattgggactcgggtagggtcaaagaggcggttttgaggaatggaggagggtggcatgggcaggggtgggttgggaagggggattggtctgtgcagagagccaatgtggattctgacagcaggtgttgctcctgtggtgagcatttggtttgtgttgacattgactgtgcagagacagataggtttgcgcagtctgttgctgctttggcaatggaaagggaggttaagttgaatttcagtgagtttcaggattggctggacaaacatgctgattatgaagctattgtggatggagctaatattgggctctaccagcagaattttgcagaaggtggattcagtcttcctcagcttgatgctgttgtgaaagaattgtacaatagaagtggagagaattggccacttgttgtcttgcataatagacgttttcggtcacttgtggaaaacccttcccacagaaaagtggttgaggagtggatggataaaggcattctttataccacaccaagtggctcaaatgatgactggtattggctttatgctgctgtgaaactcaagtgcttgctcgttacaaatgatgaaatgcgagatcatatatttgaacttctaggaagcagcttctttcttaagtggaaagagaggcatcaagtacgatatacttttgttaaaggcaatctgaaacttcagaccccacccccatattcttcagtgatccaggaatcagaaagcggatcatggcatgtacctgtagcagatgacagcgatgaggagccagcgagaacctggctctgcattacccggccaagtgcctctaaagcttctactggagctttgctatctcaaaatgcgtttctgaattcttgcacatctgagtttgttaccagtcacaacgataaaaccacaactaagacgggcttggtgacgtgtgcgcgggcgtgccaactcgcggccgagaggcctagcgaggatcgatctcggccacagggttctctctgccttggatgcaaggactttacacgattcggctttgctagccggagtgttcgtgctgtgctactcggactttctcagccacaagtaaaccagaaatcgactcatgtgagccggacctcggctgaagtgagccgggcctcggctgaggaaatatttcataagatggcctctcgggaggtcgtggacttcatcaaggagaagaagcagaccaaagggttgctgaacaggttggagatgacactgcgatctgtcaatgttgttctggatgatgctgaagagaagcagttaagtagctcagatgtggaggagtggctggatgagcttaaagaggcagtctttggtgctgaggacctgttgaccgagatcaagacagaagccatgaggagaaagttggaagctgaacaatatggaagtaccacaagtgcatggcacagactctcaatgagagtgatactcccttctacttctttggtagacgactctggtgtctatggaaggtgtgaagacaaggagaccattgctaagttgttattatcggatgatgctagtggcaataaggtaggggtgattcccatcgtgggcatgggtgggattggaaagaccaccctagctcagctcttgtacaatgatgcaagagtgaaacaacattttgatctccaagcatgggttcgtgtttcggagaattttgatgctgttagaagtgtaacaatttgtgggtctgttgacctaaatctactccaagttaatctcaaggaggctttgatggggaagaagtttctctttgttcttgatgatgtttggaatgagaattatatccactgggatgtcttaaggtgtccctttgagtttggggtgcatgaaagtaggatcattgtcacaacacgaaatgaaggtgttggatctatgatgggtactcttccaactcattatctattgcaaatatttgaagaggactgtctgtttttatttgcaaaacatgccttcagaaatgcagatcttagtgcgtatccaaatctagaagtaattgggaaacaaattgggtggtgtaaaggtcttcctctggctgcaaaatcacttggaggtctcttgtgctctaaagtgaattttatcatgcatgaccttattaagttatggagtgaaagattccaaatgttggataaggttctacatgatctattgccaacactacggtgtttgagagtgctgaacttatcaaggtatgacataaaggagttgcctagttcgattggtaacctgaaacatctaaggtacctgaatttgtcatggacttctatcgaaaagctacctgatacagtgtgtaatttgtgtaattcgcaaactttgttgttgtcccattgtgaagctcttgctcatttgccagccaacttgggaagactgacaaacttgcgccatcttgatattggagatgtgggaggtacaaatttgggaacacttcgaatttcagggattcaaaatattgctaatgctgttgatgcttttgcagccaaaatgtgggaaaagaagtctctggctcacctaatcttagaattcggaggttatactgaagattcacataaagatagagaagtgctcaataaccttcaacctcataccaacttaaatgaactcaccattgattcttacaggggatcaaggtttccaggttggttaggagatcattattcctctaatctagttcatctcgatattgtgaattgtacaaattgttgcttcttgccacctaggcctggcaacgggcgggtatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000966 GO:0001682 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004526 GO:0004540 GO:0004549 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006397 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016074 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0034470 GO:0034471 GO:0034641 GO:0034660 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0099116 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PPR_long PRORP

Protein Analysis

1136

Amino Acids

127.63

Weight (kDa)

6.13

Isoelectric Point (pI)

38.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	5 - 212	9.2e-83	Pentacotripeptide-repeat region of PRORP
PRORP	PF16953	254 - 481	3e-58	Protein-only RNase P
RNase_Zc3h12a	PF11977	311 - 443	1.6e-07	Zc3h12a-like Ribonuclease NYN domain
Rx_N	PF18052	613 - 681	1.5e-14	Rx N-terminal domain
NB-ARC	PF00931	719 - 879	3.4e-28	NB-ARC domain
LRR_14	PF23598	941 - 1118	9.7e-18	Leucine-rich repeat region
LRR_R13L1-DRL21	PF25019	1031 - 1129	8.1e-25	R13L1/DRL21 LRRs

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16650 AT2G16650 AT4G21900 AT5G60430 AT5G60430 AT5G60430 AT5G60430
fragaria_vesca	FvH4_3g24550 FvH4_3g24550 FvH4_3g24550
malus_domestica	MD03G1141100.v1.1 MD11G1171700.v1.1
prunus_persica	Prupe.6G126500_v2.0.a1
pyrus_communis	pycom03g09600
rosa_chinensis	RchiOBHm_Chr5g0043991
rosa_laevigata	RLG00000034233 RLG00000034235
rosa_multiflora	Rmu_sc0001157.1_g000006
rosa_roxburghii	Rroxscaffold_1G00037010
rosa_rugosa	Rorug05G0209600 Rorug05G0209700 Rorug05G0209700 Rorug05G0209800 Rorug05G0209900 Rorug05G0210000 Rorug05G0210100.1 Rorug05G0210200
rosa_samantha	Rh5AG294100 Rh5BG302500 Rh5CG329700 Rh5DG311300
rosa_wichuraiana	Rw5G027270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	762
AasI	GACNNNNNNGTC	1 cut(s)	2129
Acc16I	TGCGCA	2 cut(s)	380, 840
Acc36I	ACCTGC	1 cut(s)	762
Acc65I	GGTACC	1 cut(s)	2913
AccB1I	GGYRCC	1 cut(s)	2913
AccB7I	CCANNNNNTGG	2 cut(s)	2797, 3156
AccI	GTMKAC	1 cut(s)	2118
AccII	CGCG	4 cut(s)	133, 231, 1582, 1598
AclWI	GGATC	8 cut(s)	185, 383, 1357, 1390, 1626, 2519, 2551, 3301
AcoI	YGGCCR	5 cut(s)	594, 1049, 1451, 1599, 1628
AcsI	RAATTY	9 cut(s)	883, 970, 1507, 2326, 2746, 2920, 3085, 3102, 3191
AcuI	CTGAAG	7 cut(s)	221, 1319, 1341, 1788, 1938, 2611, 3228
AdeI	CACNNNGTG	1 cut(s)	1160
AflII	CTTAAG	3 cut(s)	85, 1277, 2473
AflIII	ACRYGT	2 cut(s)	243, 1574
AgsI	TTSAA	5 cut(s)	883, 1253, 2591, 3116, 3248
AjiI	CACGTC	1 cut(s)	1575
AjnI	CCWGG	4 cut(s)	1365, 1433, 3304, 3391
AjuI	GAANNNNNNNTTGG	2 cut(s)	2295, 2327
AleI	CACNNNNGTG	1 cut(s)	2833
Alw21I	GWGCWC	2 cut(s)	2738, 3237
Alw26I	GTCTC	6 cut(s)	32, 512, 818, 2150, 2732, 3174
AlwI	GGATC	8 cut(s)	185, 383, 1357, 1390, 1626, 2519, 2551, 3301
Ama87I	CYCGRG	2 cut(s)	661, 1815
ApeKI	GCWGC	8 cut(s)	90, 302, 494, 851, 1193, 1266, 2708, 3146
ApoI	RAATTY	9 cut(s)	883, 970, 1507, 2326, 2746, 2920, 3085, 3102, 3191
Asp700I	GAANNNNTTC	1 cut(s)	1797
Asp718I	GGTACC	1 cut(s)	2913
AspA2I	CCTAGG	1 cut(s)	3386
AspLEI	GCGC	5 cut(s)	95, 381, 841, 1582, 3054
AspS9I	GGNCC	3 cut(s)	1758, 1779, 1993
AsuC2I	CCSGG	2 cut(s)	1450, 1778
AsuII	TTCGAA	1 cut(s)	3100
AsuNHI	GCTAGC	1 cut(s)	1682
AvaI	CYCGRG	2 cut(s)	661, 1815
AvaII	GGWCC	2 cut(s)	1758, 1993
AvrII	CCTAGG	1 cut(s)	3386
BalI	TGGCCA	1 cut(s)	1051
BanI	GGYRCC	1 cut(s)	2913
BanII	GRGCYC	1 cut(s)	960
BbsI	GAAGAC	4 cut(s)	986, 2154, 2690, 3043
Bbv12I	GWGCWC	2 cut(s)	2738, 3237
BbvCI	CCTCAGC	3 cut(s)	999, 1788, 1989
BbvI	GCAGC	8 cut(s)	102, 289, 506, 838, 1180, 1278, 2695, 3158
BccI	CCATC	9 cut(s)	311, 617, 935, 1123, 1801, 2225, 2401, 2545, 3063
BceAI	ACGGC	2 cut(s)	272, 609
BciT130I	CCWGG	4 cut(s)	1367, 1435, 3306, 3393
BciVI	GTATCC	1 cut(s)	2661
BclI	TGATCA	1 cut(s)	238
BcnI	CCSGG	2 cut(s)	1450, 1778
BcoDI	GTCTC	6 cut(s)	32, 512, 818, 2150, 2732, 3174
BfmI	CTRYAG	1 cut(s)	1398
BfrI	CTTAAG	3 cut(s)	85, 1277, 2473
BfuAI	ACCTGC	1 cut(s)	762
BfuI	GTATCC	1 cut(s)	2661
BglI	GCCNNNNNGGC	1 cut(s)	3388
BglII	AGATCT	1 cut(s)	2638
BlnI	CCTAGG	1 cut(s)	3386
BlpI	GCTNAGC	1 cut(s)	2256
Bme1390I	CCNGG	6 cut(s)	1367, 1435, 1450, 1778, 3306, 3393
Bme18I	GGWCC	2 cut(s)	1758, 1993
BmeT110I	CYCGRG	2 cut(s)	661, 1815
BmgBI	CACGTC	1 cut(s)	1575
BmgT120I	GGNCC	3 cut(s)	1758, 1779, 1993
BmiI	GGNNCC	2 cut(s)	1422, 2915
BmrFI	CCNGG	6 cut(s)	1367, 1435, 1450, 1778, 3306, 3393
BmrI	ACTGGG	1 cut(s)	2473
BmsI	GCATC	8 cut(s)	997, 1303, 1643, 1903, 2176, 2263, 2323, 3127
BmtI	GCTAGC	1 cut(s)	1686
BmuI	ACTGGG	1 cut(s)	2473
BpiI	GAAGAC	4 cut(s)	986, 2154, 2690, 3043
BplI	GAGNNNNNCTC	4 cut(s)	2082, 2114, 3219, 3251
BpmI	CTGGAG	2 cut(s)	440, 1497
Bpu10I	CCTNAGC	3 cut(s)	999, 1788, 1989
Bpu1102I	GCTNAGC	1 cut(s)	2256
Bpu14I	TTCGAA	1 cut(s)	3100
BpuEI	CTTGAG	3 cut(s)	55, 1190, 2378
BpuMI	CCSGG	2 cut(s)	1450, 1778
Bsa29I	ATCGAT	1 cut(s)	1621
BsaBI	GATNNNNATC	2 cut(s)	615, 2216
BsaI	GGTCTC	3 cut(s)	32, 2150, 2732
BsaJI	CCNNGG	6 cut(s)	213, 371, 1648, 1761, 1782, 3386
BsaXI	ACNNNNNCTCC	6 cut(s)	459, 489, 863, 893, 1681, 1711
Bse1I	ACTGG	5 cut(s)	423, 1181, 1480, 1533, 2468
Bse3DI	GCAATG	2 cut(s)	867, 2160
Bse8I	GATNNNNATC	2 cut(s)	615, 2216
BseBI	CCWGG	4 cut(s)	1367, 1435, 3306, 3393
BseCI	ATCGAT	1 cut(s)	1621
BseDI	CCNNGG	6 cut(s)	213, 371, 1648, 1761, 1782, 3386
BseGI	GGATG	7 cut(s)	946, 1134, 1658, 1915, 1966, 2188, 2473
BseJI	GATNNNNATC	2 cut(s)	615, 2216
BseMI	GCAATG	2 cut(s)	867, 2160
BseMII	CTCAG	8 cut(s)	477, 1013, 1512, 1733, 1779, 1953, 1980, 2270
BseNI	ACTGG	5 cut(s)	423, 1181, 1480, 1533, 2468
BseRI	GAGGAG	5 cut(s)	711, 1136, 1433, 1964, 2041
BseX3I	CGGCCG	1 cut(s)	1599
BseXI	GCAGC	8 cut(s)	102, 289, 506, 838, 1180, 1278, 2695, 3158
BsgI	GTGCAG	3 cut(s)	534, 764, 840
Bsh1236I	CGCG	4 cut(s)	133, 231, 1582, 1598
Bsh1285I	CGRYCG	2 cut(s)	255, 1602
BshNI	GGYRCC	1 cut(s)	2913
BshVI	ATCGAT	1 cut(s)	1621
BsiEI	CGRYCG	2 cut(s)	255, 1602
BsiHKAI	GWGCWC	2 cut(s)	2738, 3237
BsiHKCI	CYCGRG	2 cut(s)	661, 1815
BsiSI	CCGG	5 cut(s)	392, 1450, 1687, 1756, 1777
BslFI	GGGAC	4 cut(s)	181, 671, 2466, 2980
BsmAI	GTCTC	6 cut(s)	32, 512, 818, 2150, 2732, 3174
BsmFI	GGGAC	4 cut(s)	181, 671, 2466, 2980
BsmI	GAATGC	2 cut(s)	571, 1140
Bso31I	GGTCTC	3 cut(s)	32, 2150, 2732
BsoBI	CYCGRG	2 cut(s)	661, 1815
Bsp119I	TTCGAA	1 cut(s)	3100
Bsp1286I	GDGCHC	3 cut(s)	960, 2738, 3237
Bsp1407I	TGTACA	3 cut(s)	1026, 2265, 3362
Bsp1720I	GCTNAGC	1 cut(s)	2256
BspCNI	CTCAG	8 cut(s)	478, 1012, 1513, 1732, 1780, 1952, 1981, 2269
BspDI	ATCGAT	1 cut(s)	1621
BspFNI	CGCG	4 cut(s)	133, 231, 1582, 1598
BspHI	TCATGA	1 cut(s)	583
BspLI	GGNNCC	2 cut(s)	1422, 2915
BspMI	ACCTGC	1 cut(s)	762
BspOI	GCTAGC	1 cut(s)	1686
BspPI	GGATC	8 cut(s)	185, 383, 1357, 1390, 1626, 2519, 2551, 3301
BspQI	GCTCTTC	1 cut(s)	474
BspT104I	TTCGAA	1 cut(s)	3100
BspT107I	GGYRCC	1 cut(s)	2913
BspTI	CTTAAG	3 cut(s)	85, 1277, 2473
BspTNI	GGTCTC	3 cut(s)	32, 2150, 2732
BsrDI	GCAATG	2 cut(s)	867, 2160
BsrGI	TGTACA	3 cut(s)	1026, 2265, 3362
BsrI	ACTGG	5 cut(s)	423, 1181, 1480, 1533, 2468
BssECI	CCNNGG	6 cut(s)	213, 371, 1648, 1761, 1782, 3386
BssT1I	CCWWGG	3 cut(s)	213, 1648, 3386
Bst2UI	CCWGG	4 cut(s)	1367, 1435, 3306, 3393
Bst4CI	ACNGT	4 cut(s)	818, 2600, 2835, 2959
Bst6I	CTCTTC	7 cut(s)	58, 441, 474, 520, 1914, 2565, 2586
BstAFI	CTTAAG	3 cut(s)	85, 1277, 2473
BstAPI	GCANNNNNTGC	2 cut(s)	777, 2621
BstAUI	TGTACA	3 cut(s)	1026, 2265, 3362
BstBI	TTCGAA	1 cut(s)	3100
BstC8I	GCNNGC	7 cut(s)	300, 1214, 1425, 1584, 1588, 1684, 3024
BstEII	GGTNACC	1 cut(s)	2894
BstF5I	GGATG	7 cut(s)	946, 1134, 1658, 1915, 1966, 2188, 2473
BstFNI	CGCG	4 cut(s)	133, 231, 1582, 1598
BstHHI	GCGC	5 cut(s)	95, 381, 841, 1582, 3054
BstMAI	GTCTC	6 cut(s)	32, 512, 818, 2150, 2732, 3174
BstMCI	CGRYCG	2 cut(s)	255, 1602
BstNI	CCWGG	4 cut(s)	1367, 1435, 3306, 3393
BstNSI	RCATGY	4 cut(s)	247, 920, 1394, 2624
BstPI	GGTNACC	1 cut(s)	2894
BstSCI	CCNGG	6 cut(s)	1365, 1433, 1448, 1776, 3304, 3391
BstSFI	CTRYAG	1 cut(s)	1398
BstUI	CGCG	4 cut(s)	133, 231, 1582, 1598
BstV1I	GCAGC	8 cut(s)	102, 289, 506, 838, 1180, 1278, 2695, 3158
BstV2I	GAAGAC	4 cut(s)	986, 2154, 2690, 3043
BstX2I	RGATCY	2 cut(s)	2543, 2638
BstYI	RGATCY	2 cut(s)	2543, 2638
BstZI	CGGCCG	1 cut(s)	1599
Bsu15I	ATCGAT	1 cut(s)	1621
BsuI	GTATCC	1 cut(s)	2661
BsuTUI	ATCGAT	1 cut(s)	1621
BtgZI	GCGATG	1 cut(s)	1428
BtrI	CACGTC	1 cut(s)	1575
BtsCI	GGATG	7 cut(s)	946, 1134, 1658, 1915, 1966, 2188, 2473
BtsI	GCAGTG	1 cut(s)	1883
BtsIMutI	CAGTG	6 cut(s)	186, 895, 1365, 1883, 2461, 2964
BveI	ACCTGC	1 cut(s)	762
Cac8I	GCNNGC	7 cut(s)	300, 1214, 1425, 1584, 1588, 1684, 3024
CciI	TCATGA	1 cut(s)	583
CfoI	GCGC	5 cut(s)	95, 381, 841, 1582, 3054
Cfr13I	GGNCC	3 cut(s)	1758, 1779, 1993
ClaI	ATCGAT	1 cut(s)	1621
CspCI	CAANNNNNGTGG	4 cut(s)	1018, 1053, 2666, 2701
DraIII	CACNNNGTG	1 cut(s)	1160
DrdI	GACNNNNNNGTC	1 cut(s)	2129
DseDI	GACNNNNNNGTC	1 cut(s)	2129
EaeI	YGGCCR	5 cut(s)	594, 1049, 1451, 1599, 1628
EagI	CGGCCG	1 cut(s)	1599
Eam1104I	CTCTTC	7 cut(s)	58, 441, 474, 520, 1914, 2565, 2586
EarI	CTCTTC	7 cut(s)	58, 441, 474, 520, 1914, 2565, 2586
EclXI	CGGCCG	1 cut(s)	1599
Eco130I	CCWWGG	3 cut(s)	213, 1648, 3386
Eco147I	AGGCCT	2 cut(s)	1609, 3391
Eco24I	GRGCYC	1 cut(s)	960
Eco31I	GGTCTC	3 cut(s)	32, 2150, 2732
Eco47I	GGWCC	2 cut(s)	1758, 1993
Eco52I	CGGCCG	1 cut(s)	1599
Eco57I	CTGAAG	7 cut(s)	221, 1319, 1341, 1788, 1938, 2611, 3228
Eco88I	CYCGRG	2 cut(s)	661, 1815
Eco91I	GGTNACC	1 cut(s)	2894
EcoO109I	RGGNCCY	1 cut(s)	1993
EcoO65I	GGTNACC	1 cut(s)	2894
EcoRI	GAATTC	2 cut(s)	1507, 3191
EcoRII	CCWGG	4 cut(s)	1365, 1433, 3304, 3391
EcoT14I	CCWWGG	3 cut(s)	213, 1648, 3386
EcoT22I	ATGCAT	1 cut(s)	2760
EcoT38I	GRGCYC	1 cut(s)	960
ErhI	CCWWGG	3 cut(s)	213, 1648, 3386
FalI	AAGNNNNNCTT	6 cut(s)	1128, 1160, 1550, 1582, 2408, 2440
FaqI	GGGAC	4 cut(s)	181, 671, 2466, 2980
FauI	CCCGC	2 cut(s)	1575, 3396
FbaI	TGATCA	1 cut(s)	238
FblI	GTMKAC	1 cut(s)	2118
FokI	GGATG	7 cut(s)	953, 1141, 1665, 1922, 1973, 2195, 2480
FriOI	GRGCYC	1 cut(s)	960
FspI	TGCGCA	2 cut(s)	380, 840
GlaI	GCGC	5 cut(s)	94, 380, 840, 1581, 3053
GsuI	CTGGAG	2 cut(s)	440, 1497
HapII	CCGG	5 cut(s)	392, 1450, 1687, 1756, 1777
HhaI	GCGC	5 cut(s)	95, 381, 841, 1582, 3054
Hin6I	GCGC	5 cut(s)	93, 379, 839, 1580, 3052
HinP1I	GCGC	5 cut(s)	93, 379, 839, 1580, 3052
HincII	GTYRAC	3 cut(s)	808, 2001, 2368
HindII	GTYRAC	3 cut(s)	808, 2001, 2368
HindIII	AAGCTT	1 cut(s)	1467
HpaII	CCGG	5 cut(s)	392, 1450, 1687, 1756, 1777
Hpy166II	GTNNAC	6 cut(s)	808, 1732, 1828, 2001, 2119, 2368
Hpy8I	GTNNAC	6 cut(s)	808, 1732, 1828, 2001, 2119, 2368
Hpy99I	CGWCG	2 cut(s)	253, 595
HpyCH4III	ACNGT	4 cut(s)	818, 2600, 2835, 2959
HpyCH4IV	ACGT	2 cut(s)	1075, 1574
HpySE526I	ACGT	2 cut(s)	1075, 1574
HspAI	GCGC	5 cut(s)	93, 379, 839, 1580, 3052
KpnI	GGTACC	1 cut(s)	2917
Ksp22I	TGATCA	1 cut(s)	238
LguI	GCTCTTC	1 cut(s)	474
LmnI	GCTCC	4 cut(s)	785, 944, 1420, 1478
Lsp1109I	GCAGC	8 cut(s)	102, 289, 506, 838, 1180, 1278, 2695, 3158
LweI	GCATC	8 cut(s)	997, 1303, 1643, 1903, 2176, 2263, 2323, 3127
MaeII	ACGT	2 cut(s)	1075, 1574
MaeIII	GTNAC	9 cut(s)	184, 1083, 1219, 1528, 1535, 1570, 2347, 2518, 2894
MfeI	CAATTG	1 cut(s)	206
MflI	RGATCY	2 cut(s)	2543, 2638
MhlI	GDGCHC	3 cut(s)	960, 2738, 3237
MlsI	TGGCCA	1 cut(s)	1051
MluNI	TGGCCA	1 cut(s)	1051
MlyI	GAGTC	4 cut(s)	653, 1738, 2073, 2117
MmeI	TCCRAC	5 cut(s)	1854, 2016, 2521, 2588, 2778
Mox20I	TGGCCA	1 cut(s)	1051
Mph1103I	ATGCAT	1 cut(s)	2760
MroXI	GAANNNNTTC	1 cut(s)	1797
MscI	TGGCCA	1 cut(s)	1051
MslI	CAYNNNNRTG	2 cut(s)	2466, 2833
Msp20I	TGGCCA	1 cut(s)	1051
MspA1I	CMGCKG	1 cut(s)	116
MspCI	CTTAAG	3 cut(s)	85, 1277, 2473
MspI	CCGG	5 cut(s)	392, 1450, 1687, 1756, 1777
MspR9I	CCNGG	6 cut(s)	1367, 1435, 1450, 1778, 3306, 3393
MunI	CAATTG	1 cut(s)	206
Mva1269I	GAATGC	2 cut(s)	571, 1140
MvaI	CCWGG	4 cut(s)	1367, 1435, 3306, 3393
MvnI	CGCG	4 cut(s)	133, 231, 1582, 1598
NciI	CCSGG	2 cut(s)	1450, 1778
NheI	GCTAGC	1 cut(s)	1682
NlaIV	GGNNCC	2 cut(s)	1422, 2915
NmeAIII	GCCGAG	6 cut(s)	274, 396, 1606, 1627, 1742, 1763
NmuCI	GTSAC	5 cut(s)	184, 1083, 1535, 1570, 2518
NsbI	TGCGCA	2 cut(s)	380, 840
NsiI	ATGCAT	1 cut(s)	2760
NspI	RCATGY	4 cut(s)	247, 920, 1394, 2624
NspV	TTCGAA	1 cut(s)	3100
OliI	CACNNNNGTG	1 cut(s)	2833
PagI	TCATGA	1 cut(s)	583
PaqCI	CACCTGC	1 cut(s)	762
PceI	AGGCCT	2 cut(s)	1609, 3391
PciI	ACATGT	1 cut(s)	243
PciSI	GCTCTTC	1 cut(s)	474
PctI	GAATGC	2 cut(s)	571, 1140
PdmI	GAANNNNTTC	1 cut(s)	1797
PflMI	CCANNNNNTGG	2 cut(s)	2797, 3156
PfoI	TCCNGGA	1 cut(s)	1365
Ple19I	CGATCG	1 cut(s)	255
PleI	GAGTC	4 cut(s)	653, 1738, 2073, 2117
PpsI	GAGTC	4 cut(s)	653, 1738, 2073, 2117
PpuMI	RGGWCCY	1 cut(s)	1993
PscI	ACATGT	1 cut(s)	243
Psp5II	RGGWCCY	1 cut(s)	1993
Psp6I	CCWGG	4 cut(s)	1365, 1433, 3304, 3391
PspEI	GGTNACC	1 cut(s)	2894
PspGI	CCWGG	4 cut(s)	1365, 1433, 3304, 3391
PspN4I	GGNNCC	2 cut(s)	1422, 2915
PspPI	GGNCC	3 cut(s)	1758, 1779, 1993
PspPPI	RGGWCCY	1 cut(s)	1993
PsuI	RGATCY	2 cut(s)	2543, 2638
PvuI	CGATCG	1 cut(s)	255
RseI	CAYNNNNRTG	2 cut(s)	2466, 2833
SapI	GCTCTTC	1 cut(s)	474
Sau96I	GGNCC	3 cut(s)	1758, 1779, 1993
SchI	GAGTC	4 cut(s)	653, 1738, 2073, 2117
ScrFI	CCNGG	6 cut(s)	1367, 1435, 1450, 1778, 3306, 3393
SduI	GDGCHC	3 cut(s)	960, 2738, 3237
SfaNI	GCATC	8 cut(s)	997, 1303, 1643, 1903, 2176, 2263, 2323, 3127
SfcI	CTRYAG	1 cut(s)	1398
SfuI	TTCGAA	1 cut(s)	3100
SinI	GGWCC	2 cut(s)	1758, 1993
SmiMI	CAYNNNNRTG	2 cut(s)	2466, 2833
SmlI	CTYRAG	6 cut(s)	70, 85, 1205, 1277, 2393, 2473
SmoI	CTYRAG	6 cut(s)	70, 85, 1205, 1277, 2393, 2473
SseBI	AGGCCT	2 cut(s)	1609, 3391
SspI	AATATT	4 cut(s)	952, 1797, 2586, 3121
StuI	AGGCCT	2 cut(s)	1609, 3391
StyD4I	CCNGG	6 cut(s)	1365, 1433, 1448, 1776, 3304, 3391
StyI	CCWWGG	3 cut(s)	213, 1648, 3386
TaaI	ACNGT	4 cut(s)	818, 2600, 2835, 2959
TaiI	ACGT	2 cut(s)	1078, 1577
TaqI	TCGA	9 cut(s)	251, 255, 590, 1621, 1742, 2888, 2940, 3100, 3348
TaqII	GACCGA	2 cut(s)	1071, 2018
TatI	WGTACW	3 cut(s)	1026, 2265, 3362
TauI	GCSGC	3 cut(s)	136, 308, 1601
TscAI	CASTG	6 cut(s)	193, 895, 1365, 1890, 2468, 2964
TseFI	GTSAC	5 cut(s)	184, 1083, 1535, 1570, 2518
TseI	GCWGC	8 cut(s)	90, 302, 494, 851, 1193, 1266, 2708, 3146
Tsp45I	GTSAC	5 cut(s)	184, 1083, 1535, 1570, 2518
TspGWI	ACGGA	1 cut(s)	183
TspRI	CASTG	6 cut(s)	193, 895, 1365, 1890, 2468, 2964
Van91I	CCANNNNNTGG	2 cut(s)	2797, 3156
Vha464I	CTTAAG	3 cut(s)	85, 1277, 2473
VpaK11BI	GGWCC	2 cut(s)	1758, 1993
XapI	RAATTY	9 cut(s)	883, 970, 1507, 2326, 2746, 2920, 3085, 3102, 3191
XbaI	TCTAGA	1 cut(s)	2659
XceI	RCATGY	4 cut(s)	247, 920, 1394, 2624
XcmI	CCANNNNNNNNNTGG	3 cut(s)	1431, 2224, 3062
XmaJI	CCTAGG	1 cut(s)	3386
XmiI	GTMKAC	1 cut(s)	2118
XmnI	GAANNNNTTC	1 cut(s)	1797
Zsp2I	ATGCAT	1 cut(s)	2760

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.