Rmu_sc0001207.1_g000083

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001207.1
OG0009715
Physical Location & Seq
Reverse (-)
351097 .. 355140
4044 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 939 bp
atggaatacagacttacagagggaataaacgatacagtcgtctgttttgacacggctctgaaaaccgaaagcatttccagttttgagcttggagagatgttgatgggtcatacagatggtctttctgaatctcggtcatcgagggatcagctacttccttatgctgaatctgacttaggggatgatgacactgcagactgttctgagccaatactgtactcagcctcctttgaagagcttgccaaaaatatcgttaagtatgacaccgttatatggctctcaatatcattgatgctggttttagcttggggagttggcatcatcatgctgttatatctaccctttaagagatatattctccagaaggacatctcctcccgcaagctatatgttacacctagtgaaatagtctacaaggtgtcaaggccttcttatgtaccctttttgggcatcactacaattgagaggcatgtgcccctttccctggtgattgacatcattattgaacaaggttgtttgcagtcaaaatatggacttcatacctttcgaattgaaagtatagcatgtggaaaagctgcagctgttgatgaactacaggttcaaggggtttctaaccctagtgatttgaggaaggtcatcataacagaagcttcaaaagttatacaagatagcggtataagttggaagcctactactgtcactgcagaaggggaaagcatggctcgcacaccatccgtgactgaagcaccaattctgagatcaccagctaaaagcgtaaagatggcagcttcaccacgctatgcttcaatagaacgcagaagcatactacctagtgaattgctgcttaatagacttgaagaagtcaataaatctgtaaagaaaatcgagtttttaatagagaagtcacatactcaacctgagttagagcggctgaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

312

Amino Acids

34.81

Weight (kDa)

5.25

Isoelectric Point (pI)

62.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7642 PF24649 122 - 221 1.2e-46 Domain of unknown function (DUF7642)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 928
AccI GTMKAC 1 cut(s) 411
AciI CCGC 3 cut(s) 379, 672, 928
AclWI GGATC 1 cut(s) 153
AcuI CTGAAG 1 cut(s) 762
AdeI CACNNNGTG 1 cut(s) 401
AfaI GTAC 2 cut(s) 218, 438
AfiI CCNNNNNNNGG 3 cut(s) 273, 446, 484
AgsI TTSAA 7 cut(s) 233, 506, 554, 602, 654, 807, 857
AjnI CCWGG 1 cut(s) 483
AlwI GGATC 1 cut(s) 153
AoxI GGCC 1 cut(s) 425
ApeKI GCWGC 4 cut(s) 575, 578, 785, 841
AsuHPI GGTGA 3 cut(s) 499, 753, 783
AsuII TTCGAA 1 cut(s) 547
BaeGI GKGCMC 1 cut(s) 477
BaeI ACNNNNGTAYC 2 cut(s) 24, 57
BbvI GCAGC 4 cut(s) 562, 590, 797, 828
BccI CCATC 4 cut(s) 97, 110, 739, 775
BceAI ACGGC 1 cut(s) 69
BciT130I CCWGG 1 cut(s) 485
BfaI CTAG 3 cut(s) 399, 618, 831
BfmI CTRYAG 4 cut(s) 192, 576, 593, 702
BisI GCNGC 5 cut(s) 576, 579, 786, 842, 929
BlsI GCNGC 5 cut(s) 577, 580, 787, 843, 930
Bme1390I CCNGG 1 cut(s) 485
BmrFI CCNGG 1 cut(s) 485
BmsI GCATC 3 cut(s) 282, 327, 459
BpmI CTGGAG 1 cut(s) 344
Bpu14I TTCGAA 1 cut(s) 547
BsaBI GATNNNNATC 1 cut(s) 494
BsaJI CCNNGG 1 cut(s) 483
BsaXI ACNNNNNCTCC 4 cut(s) 209, 239, 359, 389
Bsc4I CCNNNNNNNGG 3 cut(s) 273, 446, 484
Bse1I ACTGG 1 cut(s) 78
Bse8I GATNNNNATC 1 cut(s) 494
BseBI CCWGG 1 cut(s) 485
BseDI CCNNGG 1 cut(s) 483
BseGI GGATG 2 cut(s) 187, 731
BseJI GATNNNNATC 1 cut(s) 494
BseLI CCNNNNNNNGG 3 cut(s) 273, 446, 484
BseMII CTCAG 4 cut(s) 195, 234, 746, 909
BseNI ACTGG 1 cut(s) 78
BseRI GAGGAG 1 cut(s) 364
BseSI GKGCMC 1 cut(s) 477
BseXI GCAGC 4 cut(s) 562, 590, 797, 828
BshFI GGCC 1 cut(s) 427
BslI CCNNNNNNNGG 3 cut(s) 273, 446, 484
BsnI GGCC 1 cut(s) 427
Bsp119I TTCGAA 1 cut(s) 547
Bsp1286I GDGCHC 1 cut(s) 477
Bsp143I GATC 2 cut(s) 145, 758
BspACI CCGC 3 cut(s) 379, 672, 928
BspANI GGCC 1 cut(s) 427
BspCNI CTCAG 4 cut(s) 196, 233, 747, 910
BspMAI CTGCAG 3 cut(s) 196, 580, 706
BspPI GGATC 1 cut(s) 153
BspQI GCTCTTC 1 cut(s) 228
BspT104I TTCGAA 1 cut(s) 547
BsrBI CCGCTC 1 cut(s) 928
BsrI ACTGG 1 cut(s) 78
BssECI CCNNGG 1 cut(s) 483
BssMI GATC 2 cut(s) 145, 758
Bst2UI CCWGG 1 cut(s) 485
Bst4CI ACNGT 5 cut(s) 37, 200, 216, 268, 697
Bst6I CTCTTC 1 cut(s) 228
BstBI TTCGAA 1 cut(s) 547
BstC8I GCNNGC 3 cut(s) 240, 383, 724
BstDEI CTNAG 5 cut(s) 175, 204, 220, 755, 918
BstF5I GGATG 2 cut(s) 187, 731
BstKTI GATC 2 cut(s) 148, 761
BstMBI GATC 2 cut(s) 145, 758
BstMWI GCNNNNNNNGC 1 cut(s) 723
BstNI CCWGG 1 cut(s) 485
BstNSI RCATGY 2 cut(s) 473, 567
BstSCI CCNGG 1 cut(s) 483
BstSFI CTRYAG 4 cut(s) 192, 576, 593, 702
BstSLI GKGCMC 1 cut(s) 477
BstV1I GCAGC 4 cut(s) 562, 590, 797, 828
BsuRI GGCC 1 cut(s) 427
BtsCI GGATG 2 cut(s) 187, 731
BtsI GCAGTG 2 cut(s) 189, 699
BtsIMutI CAGTG 2 cut(s) 189, 699
Cac8I GCNNGC 3 cut(s) 240, 383, 724
Csp6I GTAC 2 cut(s) 217, 437
CviAII CATG 4 cut(s) 325, 470, 564, 718
CviQI GTAC 2 cut(s) 217, 437
DdeI CTNAG 5 cut(s) 175, 204, 220, 755, 918
DpnI GATC 2 cut(s) 147, 760
DpnII GATC 2 cut(s) 145, 758
DraIII CACNNNGTG 1 cut(s) 401
Eam1104I CTCTTC 1 cut(s) 228
EarI CTCTTC 1 cut(s) 228
Eco147I AGGCCT 1 cut(s) 427
Eco57I CTGAAG 1 cut(s) 762
EcoRII CCWGG 1 cut(s) 483
FaeI CATG 4 cut(s) 328, 473, 567, 721
FalI AAGNNNNNCTT 2 cut(s) 415, 447
FatI CATG 4 cut(s) 324, 469, 563, 717
FauI CCCGC 1 cut(s) 386
FblI GTMKAC 1 cut(s) 411
Fnu4HI GCNGC 5 cut(s) 576, 579, 786, 842, 929
FokI GGATG 2 cut(s) 194, 718
Fsp4HI GCNGC 5 cut(s) 576, 579, 786, 842, 929
FspBI CTAG 3 cut(s) 399, 618, 831
GluI GCNGC 5 cut(s) 576, 579, 786, 842, 929
GsuI CTGGAG 1 cut(s) 344
HaeIII GGCC 1 cut(s) 427
Hin1II CATG 4 cut(s) 328, 473, 567, 721
HindIII AAGCTT 1 cut(s) 648
HinfI GANTC 2 cut(s) 128, 167
HphI GGTGA 3 cut(s) 499, 753, 783
Hpy166II GTNNAC 1 cut(s) 412
Hpy188I TCNGA 5 cut(s) 60, 127, 172, 205, 756
Hpy188III TCNNGA 1 cut(s) 361
Hpy8I GTNNAC 1 cut(s) 412
HpyAV CCTTC 4 cut(s) 358, 438, 625, 701
HpyCH4III ACNGT 5 cut(s) 37, 200, 216, 268, 697
HpyCH4V TGCA 4 cut(s) 194, 520, 578, 704
HpyF10VI GCNNNNNNNGC 1 cut(s) 723
HpyF3I CTNAG 5 cut(s) 175, 204, 220, 755, 918
Hsp92II CATG 4 cut(s) 328, 473, 567, 721
Kzo9I GATC 2 cut(s) 145, 758
LguI GCTCTTC 1 cut(s) 228
LpnPI CCDG 8 cut(s) 91, 281, 374, 470, 497, 581, 777, 930
Lsp1109I GCAGC 4 cut(s) 562, 590, 797, 828
LweI GCATC 3 cut(s) 282, 327, 459
MaeI CTAG 3 cut(s) 399, 618, 831
MaeIII GTNAC 4 cut(s) 391, 697, 736, 903
MalI GATC 2 cut(s) 147, 760
MbiI CCGCTC 1 cut(s) 928
MboI GATC 2 cut(s) 145, 758
MboII GAAGA 2 cut(s) 245, 869
MfeI CAATTG 1 cut(s) 459
MhlI GDGCHC 1 cut(s) 477
MluCI AATT 5 cut(s) 459, 549, 750, 836, 934
MmeI TCCRAC 1 cut(s) 662
MnlI CCTC 6 cut(s) 13, 135, 235, 385, 459, 621
MseI TTAA 4 cut(s) 255, 345, 846, 893
MslI CAYNNNNRTG 2 cut(s) 114, 323
MspA1I CMGCKG 1 cut(s) 581
MspR9I CCNGG 1 cut(s) 485
MunI CAATTG 1 cut(s) 459
MvaI CCWGG 1 cut(s) 485
MwoI GCNNNNNNNGC 1 cut(s) 723
NdeII GATC 2 cut(s) 145, 758
NlaIII CATG 4 cut(s) 328, 473, 567, 721
NmuCI GTSAC 3 cut(s) 697, 736, 903
NspI RCATGY 2 cut(s) 473, 567
NspV TTCGAA 1 cut(s) 547
PceI AGGCCT 1 cut(s) 427
PciSI GCTCTTC 1 cut(s) 228
PcsI WCGNNNNNNNCGW 1 cut(s) 36
PfeI GAWTC 2 cut(s) 128, 167
PkrI GCNGC 5 cut(s) 577, 580, 787, 843, 930
Psp6I CCWGG 1 cut(s) 483
PspGI CCWGG 1 cut(s) 483
PstI CTGCAG 3 cut(s) 196, 580, 706
PvuII CAGCTG 1 cut(s) 581
RsaI GTAC 2 cut(s) 218, 438
RsaNI GTAC 2 cut(s) 217, 437
RseI CAYNNNNRTG 2 cut(s) 114, 323
SapI GCTCTTC 1 cut(s) 228
SaqAI TTAA 4 cut(s) 255, 345, 846, 893
SatI GCNGC 5 cut(s) 576, 579, 786, 842, 929
Sau3AI GATC 2 cut(s) 145, 758
ScrFI CCNGG 1 cut(s) 485
SduI GDGCHC 1 cut(s) 477
SfaNI GCATC 3 cut(s) 282, 327, 459
SfcI CTRYAG 4 cut(s) 192, 576, 593, 702
SfuI TTCGAA 1 cut(s) 547
SmiMI CAYNNNNRTG 2 cut(s) 114, 323
Sse9I AATT 5 cut(s) 459, 549, 750, 836, 934
SseBI AGGCCT 1 cut(s) 427
SsiI CCGC 3 cut(s) 379, 672, 928
SspMI CTAG 3 cut(s) 399, 618, 831
StuI AGGCCT 1 cut(s) 427
StyD4I CCNGG 1 cut(s) 483
TaaI ACNGT 5 cut(s) 37, 200, 216, 268, 697
TaqI TCGA 3 cut(s) 140, 547, 885
TaqII GACCGA 1 cut(s) 123
TasI AATT 5 cut(s) 459, 549, 750, 836, 934
TatI WGTACW 1 cut(s) 216
TauI GCSGC 1 cut(s) 931
TfiI GAWTC 2 cut(s) 128, 167
Tru1I TTAA 4 cut(s) 255, 345, 846, 893
Tru9I TTAA 4 cut(s) 255, 345, 846, 893
TscAI CASTG 2 cut(s) 196, 706
TseFI GTSAC 3 cut(s) 697, 736, 903
TseI GCWGC 4 cut(s) 575, 578, 785, 841
Tsp45I GTSAC 3 cut(s) 697, 736, 903
TspDTI ATGAA 2 cut(s) 527, 603
TspGWI ACGGA 1 cut(s) 724
TspRI CASTG 2 cut(s) 196, 706
XceI RCATGY 2 cut(s) 473, 567
XmiI GTMKAC 1 cut(s) 411
XspI CTAG 3 cut(s) 399, 618, 831
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.