Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001294.1

Orthogroup ID

OG0006058

Physical Location & Seq

Genomic Coordinates Reverse (-)

118624 .. 119316

Gene Structure 693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

atgttcgtctactccgacgtcaaggatctcaagattggcaaaggggctctggagtgcgcagtgtgcttgagcgagtttgaggactacgaaactctgcgattgctgccgaaatgccaccacgtattccatcccgactgcatcgacgcgtggttggcctcgcacatcacgtgtccggtttgccgcgcaaagctgatgcccgactcaaatcacccgctttccgagtcaaataacaattcgaatcaccaagaaagtaccggtacaaatgaaattaatgatgatcagcaacagaacgacgcggttgttgtgaatgtaagtgaaaatcagagcagcgaagcgattgagatagagaaccgtccggcgagatctggaatattcgggaagtttccaaggtcacactcgacgggtcactcagtagttcaaccgggagagaacacggagcggtacacgttgagactgccggattcagtgaggaggcagctggtttcgagccggaacaataagctcaagcggtcaagtagctacgacgtcgttctgccgcggcttggaagttcaagaaaaggctatagatacggtggcgaagggagtagtagcagtagagggaaaattagtcttgatcatcaaaccgggcggttcgacccgtgggtgttgttgaaaacgccaccgttctttggtaggggtggtggttccaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0042742 GO:0043161 GO:0043170 GO:0043207 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044464 GO:0045087 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

230

Amino Acids

25.6

Weight (kDa)

8.2

Isoelectric Point (pI)

57.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	18 - 61	9.5e-14	Ring finger domain
zf-RING_11	PF17123	18 - 47	2.8e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	18 - 60	7.7e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	19 - 60	1.9e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	31 - 61	2.2e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09110 AT4G09120 AT4G09130
fragaria_vesca	FvH4_1g20110
malus_domestica	MD15G1316800.v1.1
prunus_persica	Prupe.6G195100_v2.0.a1
pyrus_communis	pycom01g06440 pycom15g27950
rosa_chinensis	RchiOBHm_Chr2g0112141 RchiOBHm_Chr7g0233001
rosa_laevigata	RLG00000001306 RLG00000017954
rosa_multiflora	Rmu_sc0000360.1_g000026 Rmu_sc0001294.1_g000027 Rmu_ssc0000018.1_g000029
rosa_roxburghii	Rroxscaffold_2G00131730
rosa_rugosa	Rorug02G0178700
rosa_samantha	Rh2AG230700 Rh2BG244000 Rh2CG235300 Rh2DG238600 Rh7AG432600 Rh7BG405400 Rh7CG451900 Rh7DG421400
rosa_wichuraiana	Rw2G017900 Rw7G035670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	21, 528
Acc16I	TGCGCA	1 cut(s)	58
AccBSI	CCGCTC	1 cut(s)	439
AccI	GTMKAC	1 cut(s)	9
AccII	CGCG	4 cut(s)	146, 183, 296, 538
AciI	CCGC	8 cut(s)	181, 212, 296, 439, 508, 536, 538, 628
AclWI	GGATC	1 cut(s)	33
AcvI	CACGTG	1 cut(s)	168
AcyI	GRCGYC	2 cut(s)	18, 525
AfaI	GTAC	3 cut(s)	253, 259, 443
AfiI	CCNNNNNNNGG	2 cut(s)	542, 668
AflIII	ACRYGT	3 cut(s)	144, 167, 444
AgeI	ACCGGT	1 cut(s)	254
AgsI	TTSAA	3 cut(s)	419, 552, 652
AluBI	AGCT	4 cut(s)	190, 478, 502, 519
AluI	AGCT	4 cut(s)	190, 478, 502, 519
Alw26I	GTCTC	1 cut(s)	445
AlwI	GGATC	1 cut(s)	33
AoxI	GGCC	1 cut(s)	153
ApeKI	GCWGC	3 cut(s)	103, 327, 475
AseI	ATTAAT	1 cut(s)	270
AsiGI	ACCGGT	1 cut(s)	254
AspLEI	GCGC	2 cut(s)	59, 185
AsuC2I	CCSGG	2 cut(s)	423, 625
AsuHPI	GGTGA	2 cut(s)	200, 233
AsuII	TTCGAA	1 cut(s)	236
BanII	GRGCYC	1 cut(s)	49
BbrPI	CACGTG	1 cut(s)	168
BbvI	GCAGC	3 cut(s)	90, 339, 487
BccI	CCATC	1 cut(s)	135
BclI	TGATCA	2 cut(s)	277, 613
BcnI	CCSGG	2 cut(s)	423, 625
BcoDI	GTCTC	1 cut(s)	445
BfmI	CTRYAG	1 cut(s)	562
BglII	AGATCT	1 cut(s)	362
BisI	GCNGC	6 cut(s)	104, 181, 328, 476, 536, 539
BlsI	GCNGC	6 cut(s)	105, 182, 329, 477, 537, 540
Bme1390I	CCNGG	2 cut(s)	423, 625
BmiI	GGNNCC	1 cut(s)	685
BmrFI	CCNGG	2 cut(s)	423, 625
BmsI	GCATC	2 cut(s)	147, 183
BpmI	CTGGAG	1 cut(s)	71
Bpu14I	TTCGAA	1 cut(s)	236
BpuEI	CTTGAG	3 cut(s)	14, 88, 488
BpuMI	CCSGG	2 cut(s)	423, 625
BsaAI	YACGTR	2 cut(s)	121, 168
BsaHI	GRCGYC	2 cut(s)	18, 525
BsaJI	CCNNGG	3 cut(s)	386, 536, 638
BsaWI	WCCGGW	2 cut(s)	172, 254
Bsc4I	CCNNNNNNNGG	2 cut(s)	542, 668
Bse118I	RCCGGY	1 cut(s)	254
BseDI	CCNNGG	3 cut(s)	386, 536, 638
BseGI	GGATG	1 cut(s)	127
BseLI	CCNNNNNNNGG	2 cut(s)	542, 668
BseMII	CTCAG	1 cut(s)	423
BseRI	GAGGAG	1 cut(s)	484
BseXI	GCAGC	3 cut(s)	90, 339, 487
Bsh1236I	CGCG	4 cut(s)	146, 183, 296, 538
BshFI	GGCC	1 cut(s)	155
BshTI	ACCGGT	1 cut(s)	254
BsiSI	CCGG	7 cut(s)	173, 255, 356, 422, 458, 490, 624
BslI	CCNNNNNNNGG	2 cut(s)	542, 668
BsmAI	GTCTC	1 cut(s)	445
BsnI	GGCC	1 cut(s)	155
Bsp119I	TTCGAA	1 cut(s)	236
Bsp1286I	GDGCHC	1 cut(s)	49
Bsp143I	GATC	4 cut(s)	25, 277, 362, 613
BspACI	CCGC	8 cut(s)	181, 212, 296, 439, 508, 536, 538, 628
BspANI	GGCC	1 cut(s)	155
BspCNI	CTCAG	1 cut(s)	422
BspFNI	CGCG	4 cut(s)	146, 183, 296, 538
BspLI	GGNNCC	1 cut(s)	685
BspPI	GGATC	1 cut(s)	33
BspT104I	TTCGAA	1 cut(s)	236
BsrBI	CCGCTC	1 cut(s)	439
BsrFI	RCCGGY	1 cut(s)	254
BssAI	RCCGGY	1 cut(s)	254
BssECI	CCNNGG	3 cut(s)	386, 536, 638
BssMI	GATC	4 cut(s)	25, 277, 362, 613
BssNI	GRCGYC	2 cut(s)	18, 525
BssT1I	CCWWGG	1 cut(s)	386
Bst4CI	ACNGT	3 cut(s)	353, 572, 663
BstACI	GRCGYC	2 cut(s)	18, 525
BstBAI	YACGTR	2 cut(s)	121, 168
BstBI	TTCGAA	1 cut(s)	236
BstDEI	CTNAG	1 cut(s)	409
BstDSI	CCRYGG	2 cut(s)	536, 638
BstF5I	GGATG	1 cut(s)	127
BstFNI	CGCG	4 cut(s)	146, 183, 296, 538
BstHHI	GCGC	2 cut(s)	59, 185
BstKTI	GATC	4 cut(s)	28, 280, 365, 616
BstMAI	GTCTC	1 cut(s)	445
BstMBI	GATC	4 cut(s)	25, 277, 362, 613
BstMWI	GCNNNNNNNGC	3 cut(s)	63, 103, 152
BstSCI	CCNGG	2 cut(s)	421, 623
BstSFI	CTRYAG	1 cut(s)	562
BstUI	CGCG	4 cut(s)	146, 183, 296, 538
BstV1I	GCAGC	3 cut(s)	90, 339, 487
BstX2I	RGATCY	2 cut(s)	25, 362
BstYI	RGATCY	2 cut(s)	25, 362
BsuRI	GGCC	1 cut(s)	155
BtgI	CCRYGG	2 cut(s)	536, 638
BtsCI	GGATG	1 cut(s)	127
BtsI	GCAGTG	1 cut(s)	66
BtsIMutI	CAGTG	2 cut(s)	66, 471
CfoI	GCGC	2 cut(s)	59, 185
Cfr10I	RCCGGY	1 cut(s)	254
Cfr42I	CCGCGG	1 cut(s)	539
CseI	GACGC	2 cut(s)	152, 302
Csp6I	GTAC	3 cut(s)	252, 258, 442
CspAI	ACCGGT	1 cut(s)	254
CviJI	RGCY	9 cut(s)	47, 155, 190, 478, 489, 502, 519, 541, 561
CviKI_1	RGCY	9 cut(s)	47, 155, 190, 478, 489, 502, 519, 541, 561
CviQI	GTAC	3 cut(s)	252, 258, 442
DdeI	CTNAG	1 cut(s)	409
DpnI	GATC	4 cut(s)	27, 279, 364, 615
DpnII	GATC	4 cut(s)	25, 277, 362, 613
Eco130I	CCWWGG	1 cut(s)	386
Eco24I	GRGCYC	1 cut(s)	49
Eco72I	CACGTG	1 cut(s)	168
EcoT14I	CCWWGG	1 cut(s)	386
EcoT38I	GRGCYC	1 cut(s)	49
ErhI	CCWWGG	1 cut(s)	386
FaiI	YATR	1 cut(s)	564
FauI	CCCGC	1 cut(s)	219
FbaI	TGATCA	2 cut(s)	277, 613
FblI	GTMKAC	1 cut(s)	9
Fnu4HI	GCNGC	6 cut(s)	104, 181, 328, 476, 536, 539
FokI	GGATG	1 cut(s)	114
FriOI	GRGCYC	1 cut(s)	49
Fsp4HI	GCNGC	6 cut(s)	104, 181, 328, 476, 536, 539
FspI	TGCGCA	1 cut(s)	58
GlaI	GCGC	2 cut(s)	58, 184
GluI	GCNGC	6 cut(s)	104, 181, 328, 476, 536, 539
GsuI	CTGGAG	1 cut(s)	71
HaeIII	GGCC	1 cut(s)	155
HapII	CCGG	7 cut(s)	173, 255, 356, 422, 458, 490, 624
HgaI	GACGC	2 cut(s)	152, 302
HhaI	GCGC	2 cut(s)	59, 185
Hin1I	GRCGYC	2 cut(s)	18, 525
Hin6I	GCGC	2 cut(s)	57, 183
HinP1I	GCGC	2 cut(s)	57, 183
HinfI	GANTC	4 cut(s)	200, 221, 238, 461
HpaII	CCGG	7 cut(s)	173, 255, 356, 422, 458, 490, 624
HphI	GGTGA	2 cut(s)	200, 233
Hpy166II	GTNNAC	2 cut(s)	10, 444
Hpy188I	TCNGA	3 cut(s)	16, 220, 324
Hpy188III	TCNNGA	7 cut(s)	31, 50, 131, 366, 376, 552, 611
Hpy8I	GTNNAC	2 cut(s)	10, 444
Hpy99I	CGWCG	6 cut(s)	20, 146, 296, 403, 527, 530
HpyAV	CCTTC	1 cut(s)	572
HpyCH4III	ACNGT	3 cut(s)	353, 572, 663
HpyCH4IV	ACGT	5 cut(s)	18, 120, 167, 446, 525
HpyCH4V	TGCA	1 cut(s)	138
HpyF10VI	GCNNNNNNNGC	3 cut(s)	63, 103, 152
HpyF3I	CTNAG	1 cut(s)	409
HpySE526I	ACGT	5 cut(s)	18, 120, 167, 446, 525
Hsp92I	GRCGYC	2 cut(s)	18, 525
HspAI	GCGC	2 cut(s)	57, 183
Ksp22I	TGATCA	2 cut(s)	277, 613
KspI	CCGCGG	1 cut(s)	539
Kzo9I	GATC	4 cut(s)	25, 277, 362, 613
LmnI	GCTCC	1 cut(s)	436
Lsp1109I	GCAGC	3 cut(s)	90, 339, 487
LweI	GCATC	2 cut(s)	147, 183
MaeII	ACGT	5 cut(s)	18, 120, 167, 446, 525
MaeIII	GTNAC	2 cut(s)	390, 404
MalI	GATC	4 cut(s)	27, 279, 364, 615
MbiI	CCGCTC	1 cut(s)	439
MboI	GATC	4 cut(s)	25, 277, 362, 613
MflI	RGATCY	2 cut(s)	25, 362
MhlI	GDGCHC	1 cut(s)	49
MluCI	AATT	3 cut(s)	232, 267, 603
MluI	ACGCGT	1 cut(s)	144
MlyI	GAGTC	2 cut(s)	194, 230
MmeI	TCCRAC	1 cut(s)	39
MnlI	CCTC	5 cut(s)	73, 166, 462, 465, 590
MseI	TTAA	1 cut(s)	270
MspA1I	CMGCKG	2 cut(s)	478, 538
MspI	CCGG	7 cut(s)	173, 255, 356, 422, 458, 490, 624
MspR9I	CCNGG	2 cut(s)	423, 625
MvnI	CGCG	4 cut(s)	146, 183, 296, 538
MwoI	GCNNNNNNNGC	3 cut(s)	63, 103, 152
NciI	CCSGG	2 cut(s)	423, 625
NdeII	GATC	4 cut(s)	25, 277, 362, 613
NlaIV	GGNNCC	1 cut(s)	685
NmuCI	GTSAC	2 cut(s)	390, 404
NsbI	TGCGCA	1 cut(s)	58
NspV	TTCGAA	1 cut(s)	236
PcsI	WCGNNNNNNNCGW	2 cut(s)	12, 164
PfeI	GAWTC	2 cut(s)	238, 461
PinAI	ACCGGT	1 cut(s)	254
PkrI	GCNGC	6 cut(s)	105, 182, 329, 477, 537, 540
PleI	GAGTC	2 cut(s)	194, 229
PmaCI	CACGTG	1 cut(s)	168
PmlI	CACGTG	1 cut(s)	168
PpsI	GAGTC	2 cut(s)	194, 229
Ppu21I	YACGTR	2 cut(s)	121, 168
PshBI	ATTAAT	1 cut(s)	270
PspCI	CACGTG	1 cut(s)	168
PspN4I	GGNNCC	1 cut(s)	685
PsuI	RGATCY	2 cut(s)	25, 362
PvuII	CAGCTG	1 cut(s)	478
RsaI	GTAC	3 cut(s)	253, 259, 443
RsaNI	GTAC	3 cut(s)	252, 258, 442
SacII	CCGCGG	1 cut(s)	539
SaqAI	TTAA	1 cut(s)	270
SatI	GCNGC	6 cut(s)	104, 181, 328, 476, 536, 539
Sau3AI	GATC	4 cut(s)	25, 277, 362, 613
SchI	GAGTC	2 cut(s)	194, 230
ScrFI	CCNGG	2 cut(s)	423, 625
SduI	GDGCHC	1 cut(s)	49
SfaNI	GCATC	2 cut(s)	147, 183
SfcI	CTRYAG	1 cut(s)	562
Sfr303I	CCGCGG	1 cut(s)	539
SfuI	TTCGAA	1 cut(s)	236
SgrBI	CCGCGG	1 cut(s)	539
SmlI	CTYRAG	3 cut(s)	29, 67, 503
SmoI	CTYRAG	3 cut(s)	29, 67, 503
Sse9I	AATT	3 cut(s)	232, 267, 603
SsiI	CCGC	8 cut(s)	181, 212, 296, 439, 508, 536, 538, 628
SspI	AATATT	1 cut(s)	372
StyD4I	CCNGG	2 cut(s)	421, 623
StyI	CCWWGG	1 cut(s)	386
TaaI	ACNGT	3 cut(s)	353, 572, 663
TaiI	ACGT	5 cut(s)	21, 123, 170, 449, 528
TaqI	TCGA	5 cut(s)	141, 236, 398, 485, 633
TasI	AATT	3 cut(s)	232, 267, 603
TauI	GCSGC	3 cut(s)	183, 538, 541
TfiI	GAWTC	2 cut(s)	238, 461
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TscAI	CASTG	2 cut(s)	66, 471
TseFI	GTSAC	2 cut(s)	390, 404
TseI	GCWGC	3 cut(s)	103, 327, 475
Tsp45I	GTSAC	2 cut(s)	390, 404
TspDTI	ATGAA	1 cut(s)	279
TspGWI	ACGGA	1 cut(s)	449
TspRI	CASTG	2 cut(s)	66, 471
VspI	ATTAAT	1 cut(s)	270
XmiI	GTMKAC	1 cut(s)	9
ZraI	GACGTC	2 cut(s)	19, 526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.