Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001301.1

Orthogroup ID

OG0008675

Physical Location & Seq

Genomic Coordinates Reverse (-)

103589 .. 107197

Gene Structure 3609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2814 bp

atggtgggatttagacaaggattgctcaaacaaattgtgggtgaccttgctttcgtcgactcctcacccttcgggaagcttttggactcctgcattcgtaccaagtccgcgcgtgatgcccgtcgcgtccacgcccgcgtcatcaaaacccagttttcttcagaggttttcatccagaacaggctcatcgacgcgtatgggaaatgtggttcattcgatgatgcacgtaaggtgtttgataaaatgcctgagaggaacactttcagttggaactgcatcattaccgcatttatgaagttgggttttgttgatgaggctttgcagagttttaggtcgatgccggagcccgaccagtgctcatggaactcgatggtttcggggtttgcacagcatggtcgctttgaacaagctttggaatattttgttaacatgcatggggatgattttgttctgaatgaatatacgttcggtagcgctcttagtgcttgtgcgggcttaagagagctgaaaatgggtgtccaaattcatggtttcattgcgaaatcttgttactcttcagatgtttatatggggtctgcacttattgatatgtactcgaaatgtgggaatgttgcttttgcacaaagggtatttgattgcatgagtgtgcgaaatgttgtttcttggaacagtttgattacttgttatgagcaaaatggtccagcaagcgaagccgtacaagtgtttctgaggatgatggattgtgggttcgaaccggatgagttgactttagccagtatggtaagtgcttgtgcgagcttgtccgcagtgaaagaaggtcaacaaatacatgcttgcgttatgaaatgtgataaatacaggaacgatgttgtattgggaaatgcattagttgatatgtatgcaaaatgcaacagaataaatgaggccagaagggttttcgatgggatgtctatcagaaatgtggtctcagaaacttccatagtaagtggatatgcaaaggcggcaagtgtagaagttgcaaggtcgttgtttacaaagatgatggagaggaatgtagtctcttggaatgcactcattgcagggtacacacagaatggagagaatgaagaggcccttggactctttctcctcttgaaaagagagtctgtttggcccacccactacacatttgcaaatctactcaatgcttgtgcaagtcttgttgatctgcagcttggcaagcaagctcattcacacatattgaagcatggttttcaattccaggttggtgaagagcctgatatatttgttggaaattctctaatagatatgtacatgaaatgtgggtctattgaagatggctgtcaggtgtttagaaatatgttggaaagggatcatgtctcatggaatgctatgattgtgggacatgcgcaaaatggttatgggactgaagctcttgaaatatttagaaaaatgctggtatcaggggagcaaccagaccatgttactatgattggtgttctatgtgcttgtagccacgcaggattggttgaagaggggagaaatattttttacacaatgaatgaagagcacggggtggtaccattgaaggaccattatacatgtatggttgatctacttggtcgagcgggttgccttgacgaagctaagaatttaatagaggtcatgccaatgcaacccgatgctgttatatggggttctttgcttgctgcttgtaaagttcatcgtaacattaacttggggaaatatgtggcggagaagctgttagctattgaaccaaggaattctggaccttatgttcttctctcaaacatgtatgctgagcttgggagatggagtgatgttgtaagagtaaggaagctgatgaggcaacggggggttgtcaagcagccgggttgcagttggattgaaatacagggtcttctgaatgttttcctggtgaaagataaaaggcattgtcaaaaaaatgaaatctattgtcttttgaatttgctcacagaacaaatgaagcgacatggatatgtacaagatgctggtgactacgagtcttatgaagagcaagctgaatctcaactaacttcatttttcgaaatggatatgtcagaagatgtagctgttctttcattgccttattgcaatactgatttgggttttctttcgtatgtttttctagagatggagggcggttttgctgatgagctttactcagaaagtttacagctatcaaaattgcaattgggttccacatcgaatgtcaccagtatacaaagtggtttagatgatcatgttaaggttcagttgtcagatgaagatggatcttcatggtgtggttctgataacgaagtgaatgaagcctctgatatggacaaggaatggcagaggagacgtgaccaattccatacgatgggataccgtgacggtgttatagccggtgttatggccggaaaggaagcttcttctcaggagggattcaatattggctttaagcaatcagtccttgttggttacaactggggtcttgtgagaggtgttacaagggagaagttgattgaaacagaagaacaaagaactcgatttcagggattgtatgaatctgttcattccctttctacaacagatgcccttgggttgtttaacgatgaaatcacaagtaaaaatgacagagaacaagttgaaagttcagagactagttcttttgaagttgaaactggtctggaagagcaaagatttgacctcagtggtctaggaaattactctgcaaagctccgttcacttcttttggagtcgcctggaatcaaagtcaagttcccctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009451 GO:0009743 GO:0009756 GO:0009987 GO:0010033 GO:0010182 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0023052 GO:0034641 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071322 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

937

Amino Acids

105.01

Weight (kDa)

5.23

Isoelectric Point (pI)

45.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	116 - 164	3e-07	PPR repeat family
PPR	PF01535	120 - 147	6.7e-06	PPR repeat
PPR_2	PF13041	217 - 265	2.6e-09	PPR repeat family
PPR	PF01535	220 - 250	2.8e-06	PPR repeat
PPR_2	PF13041	350 - 398	2.2e-10	PPR repeat family
PPR	PF01535	353 - 382	9.7e-06	PPR repeat
PPR_2	PF13041	458 - 505	1.1e-07	PPR repeat family
PPR	PF01535	460 - 489	9.4e-07	PPR repeat
E_motif	PF20431	575 - 637	2.6e-22	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008675)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13600
fragaria_vesca	FvH4_7g02360 FvH4_7g02360
malus_domestica	MD02G1294800.v1.1 MD07G1031100.v1.1 MD07G1032100.v1.1
prunus_persica	Prupe.7G009700_v2.0.a1
pyrus_communis	pycom07g02270
rosa_chinensis	RchiOBHm_Chr1g0319691 RchiOBHm_Chr7g0218591
rosa_laevigata	RLG00000002327 RLG00000030463
rosa_multiflora	Rmu_sc0001301.1_g000024
rosa_roxburghii	Rroxscaffold_3G00240770
rosa_rugosa	Rorug01G0029400 Rorug07G0178600
rosa_samantha	Rh1BG038400 Rh7AG319700 Rh7BG311700 Rh7CG336600 Rh7DG318700
rosa_wichuraiana	Rw0G015750 Rw7G027230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1410
Acc65I	GGTACC	1 cut(s)	1579
AccB1I	GGYRCC	1 cut(s)	1579
AccB7I	CCANNNNNTGG	1 cut(s)	2404
AccBSI	CCGCTC	1 cut(s)	1628
AccI	GTMKAC	2 cut(s)	57, 2263
AccII	CGCG	5 cut(s)	110, 112, 126, 138, 194
AciI	CCGC	9 cut(s)	108, 136, 285, 491, 804, 1001, 1628, 1754, 2184
AclWI	GGATC	2 cut(s)	1380, 2323
AcoI	YGGCCR	1 cut(s)	2439
AcsI	RAATTY	5 cut(s)	522, 1294, 1651, 1783, 1987
AcuI	CTGAAG	3 cut(s)	144, 540, 1449
AdeI	CACNNNGTG	1 cut(s)	1576
AfaI	GTAC	7 cut(s)	100, 593, 717, 1085, 1313, 1581, 2025
AfeI	AGCGCT	1 cut(s)	475
AfiI	CCNNNNNNNGG	1 cut(s)	2404
AflII	CTTAAG	1 cut(s)	496
AflIII	ACRYGT	3 cut(s)	192, 1601, 1812
AhdI	GACNNNNNGTC	1 cut(s)	2044
AhlI	ACTAGT	1 cut(s)	2687
AjiI	CACGTC	1 cut(s)	2387
AjnI	CCWGG	3 cut(s)	1260, 1935, 2788
AjuI	GAANNNNNNNTTGG	2 cut(s)	1098, 1130
AloI	GAACNNNNNNTCC	6 cut(s)	193, 225, 731, 763, 1782, 1814
Alw21I	GWGCWC	2 cut(s)	359, 1572
Alw26I	GTCTC	5 cut(s)	970, 1063, 1384, 2377, 2678
AlwI	GGATC	2 cut(s)	1380, 2323
Aor51HI	AGCGCT	1 cut(s)	475
AoxI	GGCC	4 cut(s)	924, 1110, 1151, 2439
ApeKI	GCWGC	3 cut(s)	1210, 1709, 1888
ApoI	RAATTY	5 cut(s)	522, 1294, 1651, 1783, 1987
ArsI	GACNNNNNNTTYG	2 cut(s)	35, 67
Asp700I	GAANNNNTTC	3 cut(s)	260, 1931, 2595
Asp718I	GGTACC	1 cut(s)	1579
AspLEI	GCGC	3 cut(s)	112, 476, 1411
AspS9I	GGNCC	5 cut(s)	698, 1111, 1152, 1591, 1790
AsuC2I	CCSGG	1 cut(s)	1893
AsuHPI	GGTGA	6 cut(s)	53, 57, 1280, 1951, 2048, 2248
AsuII	TTCGAA	2 cut(s)	750, 2088
AvaII	GGWCC	3 cut(s)	698, 1591, 1790
BanI	GGYRCC	1 cut(s)	1579
BanII	GRGCYC	1 cut(s)	348
BbsI	GAAGAC	1 cut(s)	1913
Bbv12I	GWGCWC	2 cut(s)	359, 1572
BbvI	GCAGC	3 cut(s)	1222, 1696, 1900
BccI	CCATC	9 cut(s)	364, 730, 935, 1036, 1331, 1827, 2170, 2306, 2398
BceAI	ACGGC	1 cut(s)	698
BcgI	CGANNNNNNTGC	2 cut(s)	1614, 1648
BciT130I	CCWGG	3 cut(s)	1262, 1937, 2790
BciVI	GTATCC	1 cut(s)	2402
BclI	TGATCA	1 cut(s)	2281
BcnI	CCSGG	1 cut(s)	1893
BcoDI	GTCTC	5 cut(s)	970, 1063, 1384, 2377, 2678
BcuI	ACTAGT	1 cut(s)	2687
BfaI	CTAG	4 cut(s)	2171, 2688, 2744, 2812
BfmI	CTRYAG	1 cut(s)	1208
BfoI	RGCGCY	1 cut(s)	477
BfrI	CTTAAG	1 cut(s)	496
BfuI	GTATCC	1 cut(s)	2402
BisI	GCNGC	4 cut(s)	1002, 1211, 1710, 1889
BlpI	GCTNAGC	1 cut(s)	1821
BlsI	GCNGC	4 cut(s)	1003, 1212, 1711, 1890
Bme1390I	CCNGG	4 cut(s)	1262, 1893, 1937, 2790
Bme18I	GGWCC	3 cut(s)	698, 1591, 1790
BmeRI	GACNNNNNGTC	1 cut(s)	2044
BmgBI	CACGTC	1 cut(s)	2387
BmgT120I	GGNCC	5 cut(s)	698, 1111, 1152, 1591, 1790
BmiI	GGNNCC	3 cut(s)	345, 1581, 2242
BmrFI	CCNGG	4 cut(s)	1262, 1893, 1937, 2790
BmrI	ACTGGG	2 cut(s)	145, 2521
BmsI	GCATC	7 cut(s)	106, 211, 285, 327, 1672, 2020, 2608
BmuI	ACTGGG	2 cut(s)	145, 2521
BpiI	GAAGAC	1 cut(s)	1913
BplI	GAGNNNNNCTC	2 cut(s)	2189, 2221
Bpu1102I	GCTNAGC	1 cut(s)	1821
Bpu14I	TTCGAA	2 cut(s)	750, 2088
BpuMI	CCSGG	1 cut(s)	1893
BsaAI	YACGTR	1 cut(s)	227
BsaBI	GATNNNNATC	1 cut(s)	950
BsaI	GGTCTC	1 cut(s)	970
BsaJI	CCNNGG	3 cut(s)	1114, 1778, 2623
BsaWI	WCCGGW	1 cut(s)	754
BsaXI	ACNNNNNCTCC	6 cut(s)	1110, 1140, 1748, 1778, 1822, 1852
Bsc4I	CCNNNNNNNGG	1 cut(s)	2404
Bse118I	RCCGGY	1 cut(s)	2429
Bse1I	ACTGG	6 cut(s)	151, 352, 774, 2259, 2516, 2713
Bse3DI	GCAATG	3 cut(s)	534, 1074, 2123
Bse8I	GATNNNNATC	1 cut(s)	950
BseBI	CCWGG	3 cut(s)	1262, 1937, 2790
BseDI	CCNNGG	3 cut(s)	1114, 1778, 2623
BseGI	GGATG	5 cut(s)	171, 445, 738, 763, 951
BseJI	GATNNNNATC	1 cut(s)	950
BseLI	CCNNNNNNNGG	1 cut(s)	2404
BseMI	GCAATG	3 cut(s)	534, 1074, 2123
BseMII	CTCAG	7 cut(s)	240, 719, 981, 1812, 2220, 2474, 2749
BseNI	ACTGG	6 cut(s)	151, 352, 774, 2259, 2516, 2713
BseRI	GAGGAG	3 cut(s)	52, 1118, 2395
BseXI	GCAGC	3 cut(s)	1222, 1696, 1900
BsgI	GTGCAG	1 cut(s)	561
Bsh1236I	CGCG	5 cut(s)	110, 112, 126, 138, 194
BshFI	GGCC	4 cut(s)	926, 1112, 1153, 2441
BshNI	GGYRCC	1 cut(s)	1579
BsiHKAI	GWGCWC	2 cut(s)	359, 1572
BsiSI	CCGG	5 cut(s)	341, 755, 1892, 2430, 2442
BslFI	GGGAC	2 cut(s)	1416, 1438
BslI	CCNNNNNNNGG	1 cut(s)	2404
BsmAI	GTCTC	5 cut(s)	970, 1063, 1384, 2377, 2678
BsmBI	CGTCTC	1 cut(s)	2377
BsmFI	GGGAC	2 cut(s)	1416, 1438
BsmI	GAATGC	3 cut(s)	93, 1072, 1393
BsnI	GGCC	4 cut(s)	926, 1112, 1153, 2441
Bso31I	GGTCTC	1 cut(s)	970
Bsp119I	TTCGAA	2 cut(s)	750, 2088
Bsp1286I	GDGCHC	3 cut(s)	348, 359, 1572
Bsp1407I	TGTACA	2 cut(s)	1311, 2023
Bsp143I	GATC	5 cut(s)	1204, 1372, 1612, 2281, 2315
Bsp1720I	GCTNAGC	1 cut(s)	1821
BspACI	CCGC	9 cut(s)	108, 136, 285, 491, 804, 1001, 1628, 1754, 2184
BspANI	GGCC	4 cut(s)	926, 1112, 1153, 2441
BspCNI	CTCAG	7 cut(s)	241, 720, 980, 1813, 2219, 2473, 2748
BspFNI	CGCG	5 cut(s)	110, 112, 126, 138, 194
BspLI	GGNNCC	3 cut(s)	345, 1581, 2242
BspMAI	CTGCAG	1 cut(s)	1212
BspPI	GGATC	2 cut(s)	1380, 2323
BspQI	GCTCTTC	4 cut(s)	1266, 1560, 2049, 2712
BspT104I	TTCGAA	2 cut(s)	750, 2088
BspT107I	GGYRCC	1 cut(s)	1579
BspTI	CTTAAG	1 cut(s)	496
BspTNI	GGTCTC	1 cut(s)	970
BsrBI	CCGCTC	1 cut(s)	1628
BsrDI	GCAATG	3 cut(s)	534, 1074, 2123
BsrFI	RCCGGY	1 cut(s)	2429
BsrGI	TGTACA	2 cut(s)	1311, 2023
BsrI	ACTGG	6 cut(s)	151, 352, 774, 2259, 2516, 2713
BssAI	RCCGGY	1 cut(s)	2429
BssECI	CCNNGG	3 cut(s)	1114, 1778, 2623
BssMI	GATC	5 cut(s)	1204, 1372, 1612, 2281, 2315
BssNAI	GTATAC	1 cut(s)	2264
BssT1I	CCWWGG	3 cut(s)	1114, 1778, 2623
Bst1107I	GTATAC	1 cut(s)	2264
Bst2UI	CCWGG	3 cut(s)	1262, 1937, 2790
Bst4CI	ACNGT	3 cut(s)	671, 2414, 2420
Bst6I	CTCTTC	7 cut(s)	559, 1101, 1266, 1527, 1560, 2049, 2712
BstAFI	CTTAAG	1 cut(s)	496
BstAPI	GCANNNNNTGC	1 cut(s)	1076
BstAUI	TGTACA	2 cut(s)	1311, 2023
BstBAI	YACGTR	1 cut(s)	227
BstBI	TTCGAA	2 cut(s)	750, 2088
BstC8I	GCNNGC	9 cut(s)	136, 493, 706, 796, 835, 1220, 1224, 1707, 2061
BstDEI	CTNAG	9 cut(s)	249, 479, 728, 967, 1647, 1821, 2206, 2460, 2735
BstEII	GGTNACC	1 cut(s)	41
BstF5I	GGATG	5 cut(s)	171, 445, 738, 763, 951
BstFNI	CGCG	5 cut(s)	110, 112, 126, 138, 194
BstH2I	RGCGCY	1 cut(s)	477
BstHHI	GCGC	3 cut(s)	112, 476, 1411
BstKTI	GATC	5 cut(s)	1207, 1375, 1615, 2284, 2318
BstMAI	GTCTC	5 cut(s)	970, 1063, 1384, 2377, 2678
BstMBI	GATC	5 cut(s)	1204, 1372, 1612, 2281, 2315
BstMWI	GCNNNNNNNGC	7 cut(s)	116, 482, 710, 1001, 1076, 1219, 1867
BstNI	CCWGG	3 cut(s)	1262, 1937, 2790
BstNSI	RCATGY	5 cut(s)	433, 833, 1409, 1605, 1816
BstPI	GGTNACC	1 cut(s)	41
BstSCI	CCNGG	4 cut(s)	1260, 1891, 1935, 2788
BstSFI	CTRYAG	1 cut(s)	1208
BstUI	CGCG	5 cut(s)	110, 112, 126, 138, 194
BstV1I	GCAGC	3 cut(s)	1222, 1696, 1900
BstV2I	GAAGAC	1 cut(s)	1913
BstX2I	RGATCY	1 cut(s)	2315
BstXI	CCANNNNNNTGG	1 cut(s)	527
BstYI	RGATCY	1 cut(s)	2315
BstZ17I	GTATAC	1 cut(s)	2264
BsuI	GTATCC	1 cut(s)	2402
BsuRI	GGCC	4 cut(s)	926, 1112, 1153, 2441
BtrI	CACGTC	1 cut(s)	2387
BtsCI	GGATG	5 cut(s)	171, 445, 738, 763, 951
BtsI	GCAGTG	1 cut(s)	813
BtsIMutI	CAGTG	3 cut(s)	359, 813, 2743
Cac8I	GCNNGC	9 cut(s)	136, 493, 706, 796, 835, 1220, 1224, 1707, 2061
CfoI	GCGC	3 cut(s)	112, 476, 1411
Cfr10I	RCCGGY	1 cut(s)	2429
Cfr13I	GGNCC	5 cut(s)	698, 1111, 1152, 1591, 1790
CseI	GACGC	3 cut(s)	115, 127, 200
Csp6I	GTAC	7 cut(s)	99, 592, 716, 1084, 1312, 1580, 2024
CviQI	GTAC	7 cut(s)	99, 592, 716, 1084, 1312, 1580, 2024
DdeI	CTNAG	9 cut(s)	249, 479, 728, 967, 1647, 1821, 2206, 2460, 2735
DpnI	GATC	5 cut(s)	1206, 1374, 1614, 2283, 2317
DpnII	GATC	5 cut(s)	1204, 1372, 1612, 2281, 2315
DraIII	CACNNNGTG	1 cut(s)	1576
DriI	GACNNNNNGTC	1 cut(s)	2044
EaeI	YGGCCR	1 cut(s)	2439
Eam1104I	CTCTTC	7 cut(s)	559, 1101, 1266, 1527, 1560, 2049, 2712
Eam1105I	GACNNNNNGTC	1 cut(s)	2044
EarI	CTCTTC	7 cut(s)	559, 1101, 1266, 1527, 1560, 2049, 2712
EciI	GGCGGA	1 cut(s)	1769
Eco130I	CCWWGG	3 cut(s)	1114, 1778, 2623
Eco24I	GRGCYC	1 cut(s)	348
Eco31I	GGTCTC	1 cut(s)	970
Eco47I	GGWCC	3 cut(s)	698, 1591, 1790
Eco47III	AGCGCT	1 cut(s)	475
Eco57I	CTGAAG	3 cut(s)	144, 540, 1449
Eco91I	GGTNACC	1 cut(s)	41
EcoO109I	RGGNCCY	1 cut(s)	1111
EcoO65I	GGTNACC	1 cut(s)	41
EcoRI	GAATTC	1 cut(s)	1783
EcoRII	CCWGG	3 cut(s)	1260, 1935, 2788
EcoT14I	CCWWGG	3 cut(s)	1114, 1778, 2623
EcoT22I	ATGCAT	2 cut(s)	435, 886
EcoT38I	GRGCYC	1 cut(s)	348
ErhI	CCWWGG	3 cut(s)	1114, 1778, 2623
Esp3I	CGTCTC	1 cut(s)	2377
FalI	AAGNNNNNCTT	2 cut(s)	1098, 1130
FaqI	GGGAC	2 cut(s)	1416, 1438
FauI	CCCGC	3 cut(s)	143, 484, 1621
FbaI	TGATCA	1 cut(s)	2281
FblI	GTMKAC	2 cut(s)	57, 2263
Fnu4HI	GCNGC	4 cut(s)	1002, 1211, 1710, 1889
FokI	GGATG	5 cut(s)	158, 452, 745, 770, 958
FriOI	GRGCYC	1 cut(s)	348
Fsp4HI	GCNGC	4 cut(s)	1002, 1211, 1710, 1889
FspBI	CTAG	4 cut(s)	2171, 2688, 2744, 2812
FspI	TGCGCA	1 cut(s)	1410
GlaI	GCGC	3 cut(s)	111, 475, 1410
GluI	GCNGC	4 cut(s)	1002, 1211, 1710, 1889
HaeII	RGCGCY	1 cut(s)	477
HaeIII	GGCC	4 cut(s)	926, 1112, 1153, 2441
HapII	CCGG	5 cut(s)	341, 755, 1892, 2430, 2442
HgaI	GACGC	3 cut(s)	115, 127, 200
HhaI	GCGC	3 cut(s)	112, 476, 1411
Hin6I	GCGC	3 cut(s)	110, 474, 1409
HinP1I	GCGC	3 cut(s)	110, 474, 1409
HincII	GTYRAC	4 cut(s)	58, 427, 765, 821
HindII	GTYRAC	4 cut(s)	58, 427, 765, 821
HindIII	AAGCTT	3 cut(s)	77, 408, 2451
HpaI	GTTAAC	1 cut(s)	427
HpaII	CCGG	5 cut(s)	341, 755, 1892, 2430, 2442
HphI	GGTGA	6 cut(s)	53, 57, 1280, 1951, 2048, 2248
Hpy188III	TCNNGA	8 cut(s)	73, 175, 1132, 1436, 1788, 2171, 2462, 2714
Hpy99I	CGWCG	3 cut(s)	59, 126, 194
HpyAV	CCTTC	4 cut(s)	79, 809, 924, 1582
HpyCH4III	ACNGT	3 cut(s)	671, 2414, 2420
HpyCH4IV	ACGT	3 cut(s)	226, 464, 2386
HpyF10VI	GCNNNNNNNGC	7 cut(s)	116, 482, 710, 1001, 1076, 1219, 1867
HpyF3I	CTNAG	9 cut(s)	249, 479, 728, 967, 1647, 1821, 2206, 2460, 2735
HpySE526I	ACGT	3 cut(s)	226, 464, 2386
HspAI	GCGC	3 cut(s)	110, 474, 1409
KpnI	GGTACC	1 cut(s)	1583
Ksp22I	TGATCA	1 cut(s)	2281
KspAI	GTTAAC	1 cut(s)	427
Kzo9I	GATC	5 cut(s)	1204, 1372, 1612, 2281, 2315
LguI	GCTCTTC	4 cut(s)	1266, 1560, 2049, 2712
LmnI	GCTCC	3 cut(s)	343, 1468, 2769
Lsp1109I	GCAGC	3 cut(s)	1222, 1696, 1900
LweI	GCATC	7 cut(s)	106, 211, 285, 327, 1672, 2020, 2608
MaeI	CTAG	4 cut(s)	2171, 2688, 2744, 2812
MaeII	ACGT	3 cut(s)	226, 464, 2386
MalI	GATC	5 cut(s)	1206, 1374, 1614, 2283, 2317
MbiI	CCGCTC	1 cut(s)	1628
MboI	GATC	5 cut(s)	1204, 1372, 1612, 2281, 2315
MfeI	CAATTG	1 cut(s)	2234
MflI	RGATCY	1 cut(s)	2315
MhlI	GDGCHC	3 cut(s)	348, 359, 1572
MluI	ACGCGT	1 cut(s)	192
MlyI	GAGTC	6 cut(s)	53, 80, 1113, 1151, 2054, 2792
MmeI	TCCRAC	4 cut(s)	248, 1270, 1344, 1883
Mph1103I	ATGCAT	2 cut(s)	435, 886
MroXI	GAANNNNTTC	3 cut(s)	260, 1931, 2595
MseI	TTAA	7 cut(s)	426, 497, 1655, 1734, 2289, 2484, 2634
MslI	CAYNNNNRTG	4 cut(s)	438, 644, 1670, 2019
MspCI	CTTAAG	1 cut(s)	496
MspI	CCGG	5 cut(s)	341, 755, 1892, 2430, 2442
MspR9I	CCNGG	4 cut(s)	1262, 1893, 1937, 2790
MunI	CAATTG	1 cut(s)	2234
Mva1269I	GAATGC	3 cut(s)	93, 1072, 1393
MvaI	CCWGG	3 cut(s)	1262, 1937, 2790
MvnI	CGCG	5 cut(s)	110, 112, 126, 138, 194
MwoI	GCNNNNNNNGC	7 cut(s)	116, 482, 710, 1001, 1076, 1219, 1867
NciI	CCSGG	1 cut(s)	1893
NdeII	GATC	5 cut(s)	1204, 1372, 1612, 2281, 2315
NlaIV	GGNNCC	3 cut(s)	345, 1581, 2242
NmuCI	GTSAC	5 cut(s)	41, 2036, 2254, 2387, 2414
NsbI	TGCGCA	1 cut(s)	1410
NsiI	ATGCAT	2 cut(s)	435, 886
NspI	RCATGY	5 cut(s)	433, 833, 1409, 1605, 1816
NspV	TTCGAA	2 cut(s)	750, 2088
PciI	ACATGT	2 cut(s)	1601, 1812
PciSI	GCTCTTC	4 cut(s)	1266, 1560, 2049, 2712
PctI	GAATGC	3 cut(s)	93, 1072, 1393
PdmI	GAANNNNTTC	3 cut(s)	260, 1931, 2595
PfeI	GAWTC	4 cut(s)	2066, 2469, 2591, 2793
PflMI	CCANNNNNTGG	1 cut(s)	2404
PkrI	GCNGC	4 cut(s)	1003, 1212, 1711, 1890
PleI	GAGTC	6 cut(s)	53, 80, 1113, 1150, 2053, 2791
PpsI	GAGTC	6 cut(s)	53, 80, 1113, 1150, 2053, 2791
Ppu21I	YACGTR	1 cut(s)	227
PscI	ACATGT	2 cut(s)	1601, 1812
Psp6I	CCWGG	3 cut(s)	1260, 1935, 2788
PspEI	GGTNACC	1 cut(s)	41
PspGI	CCWGG	3 cut(s)	1260, 1935, 2788
PspN4I	GGNNCC	3 cut(s)	345, 1581, 2242
PspPI	GGNCC	5 cut(s)	698, 1111, 1152, 1591, 1790
PstI	CTGCAG	1 cut(s)	1212
PsuI	RGATCY	1 cut(s)	2315
RsaI	GTAC	7 cut(s)	100, 593, 717, 1085, 1313, 1581, 2025
RsaNI	GTAC	7 cut(s)	99, 592, 716, 1084, 1312, 1580, 2024
RseI	CAYNNNNRTG	4 cut(s)	438, 644, 1670, 2019
SalI	GTCGAC	1 cut(s)	56
SapI	GCTCTTC	4 cut(s)	1266, 1560, 2049, 2712
SaqAI	TTAA	7 cut(s)	426, 497, 1655, 1734, 2289, 2484, 2634
SatI	GCNGC	4 cut(s)	1002, 1211, 1710, 1889
Sau3AI	GATC	5 cut(s)	1204, 1372, 1612, 2281, 2315
Sau96I	GGNCC	5 cut(s)	698, 1111, 1152, 1591, 1790
SchI	GAGTC	6 cut(s)	53, 80, 1113, 1151, 2054, 2792
ScrFI	CCNGG	4 cut(s)	1262, 1893, 1937, 2790
SduI	GDGCHC	3 cut(s)	348, 359, 1572
SfaNI	GCATC	7 cut(s)	106, 211, 285, 327, 1672, 2020, 2608
SfcI	CTRYAG	1 cut(s)	1208
SfuI	TTCGAA	2 cut(s)	750, 2088
SinI	GGWCC	3 cut(s)	698, 1591, 1790
SmiMI	CAYNNNNRTG	4 cut(s)	438, 644, 1670, 2019
SmlI	CTYRAG	1 cut(s)	496
SmoI	CTYRAG	1 cut(s)	496
SpeI	ACTAGT	1 cut(s)	2687
SsiI	CCGC	9 cut(s)	108, 136, 285, 491, 804, 1001, 1628, 1754, 2184
SspI	AATATT	4 cut(s)	419, 1443, 1546, 2476
SspMI	CTAG	4 cut(s)	2171, 2688, 2744, 2812
StyD4I	CCNGG	4 cut(s)	1260, 1891, 1935, 2788
StyI	CCWWGG	3 cut(s)	1114, 1778, 2623
TaaI	ACNGT	3 cut(s)	671, 2414, 2420
TaiI	ACGT	3 cut(s)	229, 467, 2389
TatI	WGTACW	3 cut(s)	591, 1311, 2023
TauI	GCSGC	1 cut(s)	1004
TfiI	GAWTC	4 cut(s)	2066, 2469, 2591, 2793
Tru1I	TTAA	7 cut(s)	426, 497, 1655, 1734, 2289, 2484, 2634
Tru9I	TTAA	7 cut(s)	426, 497, 1655, 1734, 2289, 2484, 2634
TscAI	CASTG	3 cut(s)	359, 813, 2743
TseFI	GTSAC	5 cut(s)	41, 2036, 2254, 2387, 2414
TseI	GCWGC	3 cut(s)	1210, 1709, 1888
Tsp45I	GTSAC	5 cut(s)	41, 2036, 2254, 2387, 2414
TspGWI	ACGGA	1 cut(s)	2756
TspRI	CASTG	3 cut(s)	359, 813, 2743
Van91I	CCANNNNNTGG	1 cut(s)	2404
Vha464I	CTTAAG	1 cut(s)	496
VpaK11BI	GGWCC	3 cut(s)	698, 1591, 1790
XapI	RAATTY	5 cut(s)	522, 1294, 1651, 1783, 1987
XbaI	TCTAGA	1 cut(s)	2170
XceI	RCATGY	5 cut(s)	433, 833, 1409, 1605, 1816
XmiI	GTMKAC	2 cut(s)	57, 2263
XmnI	GAANNNNTTC	3 cut(s)	260, 1931, 2595
XspI	CTAG	4 cut(s)	2171, 2688, 2744, 2812
Zsp2I	ATGCAT	2 cut(s)	435, 886

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.