Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001509.1

Orthogroup ID

OG0005014

Physical Location & Seq

Genomic Coordinates Forward (+)

59124 .. 62921

Gene Structure 3798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

atggcgacggtgacggaatctgccatgccgttcagattgttggccgaggaagaagacgatagctcgagtccgtcggacgccgtcgcattcgtcggactgtgcttggtgttaggaatcgcatgcaggcatgtgttgcgtgggaccagagtgccctacaccgtcgctcttctaattctcggcattgccatcggttccatagaatatggtacacaccatcgtttgggcaagattggggatggcattcgaatttgggcatctattgatcctgaccttctattggccgtttttcttcctgcccttctttttgagagttcattttctatggaagtgcaccaaataaagagatgtattcttcaaatgattatactagctggcccaggtgttttgatatcaaccttctgtcttggatctgctttgaagctcactttcccttatggctggacttggaaaacatcattgttgttgggaggacttttgagtgctactgatcccgtggctgttgttgctctactaaaagagcttggtgcaagcaaaaaactgagtacaataatcgaaggagagtccttgatgaatgatgggacagcaattgtggtttatcagctattctatcaaatggtcctcggaaagagctatgactgggcagccataattaaatttctatttgaagttgcatttggagctgtaggtattggtcttgcttttggtataatatctgtcctgtggcttgggttcattttcaatgacactgtgatagagatcacactaacagtagctgtgagctatgttgcctacttcactgctcaagagggtgcagctgtgtctggcgttttggcagtgatgactttaggaatgttttatgctgcgattgcaaagacagcttttaagggtgaaagccagcaaagcttacatcatttctgtcatacttacttagatggaattgctgatgtatgtgtctacaactctgagtgtgttaatggtgaactagcagagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0005215 GO:0005451 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0006873 GO:0006885 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008324 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009636 GO:0009651 GO:0009941 GO:0009987 GO:0010035 GO:0015075 GO:0015077 GO:0015078 GO:0015079 GO:0015081 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015385 GO:0015386 GO:0015491 GO:0015672 GO:0016020 GO:0019222 GO:0019725 GO:0022804 GO:0022821 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030004 GO:0030641 GO:0031323 GO:0031967 GO:0031975 GO:0034220 GO:0035725 GO:0042221 GO:0042493 GO:0042542 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0046873 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098657 GO:0098659 GO:0098660 GO:0098662 GO:0098719 GO:0098739 GO:0098771 GO:0099516 GO:0099587 GO:1901700 GO:1902600 GO:2000377

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger cNMP_binding

Protein Analysis

330

Amino Acids

35.45

Weight (kDa)

5.06

Isoelectric Point (pI)

35.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_H_Exchanger	PF00999	36 - 307	3.4e-49	Sodium/hydrogen exchanger, transmembrane

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14660 AT1G14660 AT2G01980
fragaria_vesca	FvH4_4g35880 FvH4_4g35880 FvH4_4g35880 FvH4_4g35880 FvH4_4g35880 FvH4_4g35890
malus_domestica	MD13G1014200.v1.1 MD16G1011300.v1.1 MD16G1011400.v1.1 MD16G1011500.v1.1
prunus_persica	Prupe.1G339200_v2.0.a1 Prupe.1G339200_v2.0.a1
pyrus_communis	pycom13g01220 pycom13g01230 pycom16g01100 pycom16g01110
rosa_chinensis	RchiOBHm_Chr4g0445491
rosa_laevigata	RLG00000005737
rosa_multiflora	Rmu_sc0001509.1_g000010 Rmu_sc0010466.1_g000001
rosa_roxburghii	Rroxscaffold_5G00385970
rosa_rugosa	Rorug04G0361700
rosa_samantha	Rh4AG423100 Rh4BG435100 Rh4CG450000 Rh4DG431400
rosa_wichuraiana	Rw4G036290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	220
AccI	GTMKAC	1 cut(s)	954
AclWI	GGATC	3 cut(s)	257, 415, 482
AcoI	YGGCCR	2 cut(s)	42, 279
AcsI	RAATTY	2 cut(s)	246, 653
AcyI	GRCGYC	1 cut(s)	78
AfaI	GTAC	2 cut(s)	208, 544
AfiI	CCNNNNNNNGG	2 cut(s)	220, 277
AgsI	TTSAA	4 cut(s)	356, 418, 665, 739
AjnI	CCWGG	1 cut(s)	376
AjuI	GAANNNNNNNTTGG	2 cut(s)	657, 689
Alw21I	GWGCWC	1 cut(s)	333
Alw44I	GTGCAC	1 cut(s)	329
AlwI	GGATC	3 cut(s)	257, 415, 482
AlwNI	CAGNNNCTG	1 cut(s)	773
Ama87I	CYCGRG	1 cut(s)	64
AoxI	GGCC	3 cut(s)	42, 279, 373
ApaLI	GTGCAC	1 cut(s)	329
ApeKI	GCWGC	3 cut(s)	641, 812, 860
ApoI	RAATTY	2 cut(s)	246, 653
AspS9I	GGNCC	3 cut(s)	141, 374, 616
AsuHPI	GGTGA	3 cut(s)	22, 899, 989
AsuII	TTCGAA	1 cut(s)	244
AvaI	CYCGRG	1 cut(s)	64
AvaII	GGWCC	2 cut(s)	141, 616
BaeGI	GKGCMC	2 cut(s)	153, 333
BbsI	GAAGAC	1 cut(s)	60
Bbv12I	GWGCWC	1 cut(s)	333
BbvI	GCAGC	3 cut(s)	653, 824, 847
BccI	CCATC	5 cut(s)	194, 222, 230, 569, 926
BceAI	ACGGC	3 cut(s)	13, 65, 266
BcgI	CGANNNNNNTGC	2 cut(s)	169, 203
BciT130I	CCWGG	1 cut(s)	378
BfaI	CTAG	2 cut(s)	368, 983
BfmI	CTRYAG	1 cut(s)	681
BisI	GCNGC	3 cut(s)	642, 813, 861
BlsI	GCNGC	3 cut(s)	643, 814, 862
Bme1390I	CCNGG	1 cut(s)	378
Bme18I	GGWCC	2 cut(s)	141, 616
BmeT110I	CYCGRG	1 cut(s)	64
BmgT120I	GGNCC	3 cut(s)	141, 374, 616
BmiI	GGNNCC	2 cut(s)	142, 193
BmrFI	CCNGG	1 cut(s)	378
BmrI	ACTGGG	1 cut(s)	646
BmsI	GCATC	1 cut(s)	263
BmuI	ACTGGG	1 cut(s)	646
BpiI	GAAGAC	1 cut(s)	60
Bpu14I	TTCGAA	1 cut(s)	244
BpuEI	CTTGAG	1 cut(s)	786
BsaBI	GATNNNNATC	1 cut(s)	755
BsaHI	GRCGYC	1 cut(s)	78
BsaJI	CCNNGG	4 cut(s)	45, 376, 492, 619
Bsc4I	CCNNNNNNNGG	2 cut(s)	220, 277
Bse1I	ACTGG	1 cut(s)	641
Bse3DI	GCAATG	1 cut(s)	180
Bse8I	GATNNNNATC	1 cut(s)	755
BseBI	CCWGG	1 cut(s)	378
BseDI	CCNNGG	4 cut(s)	45, 376, 492, 619
BseGI	GGATG	1 cut(s)	241
BseJI	GATNNNNATC	1 cut(s)	755
BseLI	CCNNNNNNNGG	2 cut(s)	220, 277
BseMI	GCAATG	1 cut(s)	180
BseMII	CTCAG	2 cut(s)	530, 954
BseNI	ACTGG	1 cut(s)	641
BseSI	GKGCMC	2 cut(s)	153, 333
BseXI	GCAGC	3 cut(s)	653, 824, 847
BsgI	GTGCAG	1 cut(s)	831
BshFI	GGCC	3 cut(s)	44, 281, 375
BsiHKAI	GWGCWC	1 cut(s)	333
BsiHKCI	CYCGRG	1 cut(s)	64
BslFI	GGGAC	2 cut(s)	154, 592
BslI	CCNNNNNNNGG	2 cut(s)	220, 277
BsmFI	GGGAC	2 cut(s)	154, 592
BsmI	GAATGC	2 cut(s)	86, 240
BsnI	GGCC	3 cut(s)	44, 281, 375
BsoBI	CYCGRG	1 cut(s)	64
Bsp119I	TTCGAA	1 cut(s)	244
Bsp1286I	GDGCHC	2 cut(s)	153, 333
Bsp143I	GATC	4 cut(s)	262, 407, 487, 756
BspANI	GGCC	3 cut(s)	44, 281, 375
BspCNI	CTCAG	2 cut(s)	531, 955
BspLI	GGNNCC	2 cut(s)	142, 193
BspPI	GGATC	3 cut(s)	257, 415, 482
BspQI	GCTCTTC	1 cut(s)	171
BspT104I	TTCGAA	1 cut(s)	244
BsrDI	GCAATG	1 cut(s)	180
BsrI	ACTGG	1 cut(s)	641
BssECI	CCNNGG	4 cut(s)	45, 376, 492, 619
BssMI	GATC	4 cut(s)	262, 407, 487, 756
BssNI	GRCGYC	1 cut(s)	78
Bst2UI	CCWGG	1 cut(s)	378
Bst4CI	ACNGT	5 cut(s)	10, 99, 160, 748, 769
Bst6I	CTCTTC	1 cut(s)	171
BstACI	GRCGYC	1 cut(s)	78
BstAPI	GCANNNNNTGC	1 cut(s)	133
BstBI	TTCGAA	1 cut(s)	244
BstC8I	GCNNGC	5 cut(s)	121, 125, 373, 529, 896
BstDEI	CTNAG	3 cut(s)	539, 928, 963
BstDSI	CCRYGG	1 cut(s)	492
BstF5I	GGATG	1 cut(s)	241
BstKTI	GATC	4 cut(s)	265, 410, 490, 759
BstMBI	GATC	4 cut(s)	262, 407, 487, 756
BstMWI	GCNNNNNNNGC	6 cut(s)	133, 503, 677, 866, 875, 900
BstNI	CCWGG	1 cut(s)	378
BstNSI	RCATGY	2 cut(s)	123, 131
BstSCI	CCNGG	1 cut(s)	376
BstSFI	CTRYAG	1 cut(s)	681
BstSLI	GKGCMC	2 cut(s)	153, 333
BstV1I	GCAGC	3 cut(s)	653, 824, 847
BstV2I	GAAGAC	1 cut(s)	60
BstX2I	RGATCY	1 cut(s)	407
BstYI	RGATCY	1 cut(s)	407
BsuRI	GGCC	3 cut(s)	44, 281, 375
BtgI	CCRYGG	1 cut(s)	492
BtsCI	GGATG	1 cut(s)	241
BtsI	GCAGTG	2 cut(s)	795, 840
BtsIMutI	CAGTG	3 cut(s)	744, 795, 840
Cac8I	GCNNGC	5 cut(s)	121, 125, 373, 529, 896
CaiI	CAGNNNCTG	1 cut(s)	773
Cfr13I	GGNCC	3 cut(s)	141, 374, 616
CseI	GACGC	1 cut(s)	86
Csp6I	GTAC	2 cut(s)	207, 543
CviAII	CATG	3 cut(s)	25, 120, 128
CviQI	GTAC	2 cut(s)	207, 543
DdeI	CTNAG	3 cut(s)	539, 928, 963
DpnI	GATC	4 cut(s)	264, 409, 489, 758
DpnII	GATC	4 cut(s)	262, 407, 487, 756
EaeI	YGGCCR	2 cut(s)	42, 279
Eam1104I	CTCTTC	1 cut(s)	171
EarI	CTCTTC	1 cut(s)	171
Eco32I	GATATC	1 cut(s)	390
Eco47I	GGWCC	2 cut(s)	141, 616
Eco88I	CYCGRG	1 cut(s)	64
EcoRII	CCWGG	1 cut(s)	376
EcoRV	GATATC	1 cut(s)	390
FaeI	CATG	3 cut(s)	28, 123, 131
FaqI	GGGAC	2 cut(s)	154, 592
FatI	CATG	3 cut(s)	24, 119, 127
FblI	GTMKAC	1 cut(s)	954
Fnu4HI	GCNGC	3 cut(s)	642, 813, 861
FokI	GGATG	1 cut(s)	248
Fsp4HI	GCNGC	3 cut(s)	642, 813, 861
FspBI	CTAG	2 cut(s)	368, 983
GluI	GCNGC	3 cut(s)	642, 813, 861
HaeIII	GGCC	3 cut(s)	44, 281, 375
HgaI	GACGC	1 cut(s)	86
Hin1I	GRCGYC	1 cut(s)	78
Hin1II	CATG	3 cut(s)	28, 123, 131
HindIII	AAGCTT	1 cut(s)	901
HinfI	GANTC	4 cut(s)	17, 67, 114, 560
HphI	GGTGA	3 cut(s)	22, 899, 989
Hpy166II	GTNNAC	4 cut(s)	209, 331, 955, 980
Hpy188I	TCNGA	5 cut(s)	35, 76, 95, 623, 964
Hpy188III	TCNNGA	2 cut(s)	266, 803
Hpy8I	GTNNAC	4 cut(s)	209, 331, 955, 980
Hpy99I	CGWCG	5 cut(s)	10, 76, 86, 95, 164
HpyAV	CCTTC	4 cut(s)	281, 308, 406, 548
HpyCH4III	ACNGT	5 cut(s)	10, 99, 160, 748, 769
HpyCH4V	TGCA	6 cut(s)	123, 331, 527, 671, 812, 869
HpyF10VI	GCNNNNNNNGC	6 cut(s)	133, 503, 677, 866, 875, 900
HpyF3I	CTNAG	3 cut(s)	539, 928, 963
Hsp92I	GRCGYC	1 cut(s)	78
Hsp92II	CATG	3 cut(s)	28, 123, 131
Kzo9I	GATC	4 cut(s)	262, 407, 487, 756
LguI	GCTCTTC	1 cut(s)	171
LmnI	GCTCC	1 cut(s)	677
Lsp1109I	GCAGC	3 cut(s)	653, 824, 847
LweI	GCATC	1 cut(s)	263
MaeI	CTAG	2 cut(s)	368, 983
MaeIII	GTNAC	1 cut(s)	10
MalI	GATC	4 cut(s)	264, 409, 489, 758
MboI	GATC	4 cut(s)	262, 407, 487, 756
MboII	GAAGA	5 cut(s)	62, 65, 158, 281, 344
MfeI	CAATTG	1 cut(s)	585
MflI	RGATCY	1 cut(s)	407
MhlI	GDGCHC	2 cut(s)	153, 333
MluCI	AATT	6 cut(s)	171, 246, 585, 648, 653, 936
MlyI	GAGTC	2 cut(s)	76, 569
MmeI	TCCRAC	2 cut(s)	54, 73
MnlI	CCTC	4 cut(s)	40, 461, 629, 799
MseI	TTAA	3 cut(s)	651, 882, 972
MspA1I	CMGCKG	1 cut(s)	815
MspR9I	CCNGG	1 cut(s)	378
MunI	CAATTG	1 cut(s)	585
Mva1269I	GAATGC	2 cut(s)	86, 240
MvaI	CCWGG	1 cut(s)	378
MwoI	GCNNNNNNNGC	6 cut(s)	133, 503, 677, 866, 875, 900
NdeII	GATC	4 cut(s)	262, 407, 487, 756
NlaIII	CATG	3 cut(s)	28, 123, 131
NlaIV	GGNNCC	2 cut(s)	142, 193
NmeAIII	GCCGAG	2 cut(s)	70, 156
NmuCI	GTSAC	1 cut(s)	10
NspI	RCATGY	2 cut(s)	123, 131
NspV	TTCGAA	1 cut(s)	244
PaeI	GCATGC	1 cut(s)	123
PaeR7I	CTCGAG	1 cut(s)	64
PciSI	GCTCTTC	1 cut(s)	171
PctI	GAATGC	2 cut(s)	86, 240
PfeI	GAWTC	2 cut(s)	17, 114
PflFI	GACNNNGTC	1 cut(s)	80
PflMI	CCANNNNNTGG	1 cut(s)	220
PkrI	GCNGC	3 cut(s)	643, 814, 862
PleI	GAGTC	2 cut(s)	75, 568
PpsI	GAGTC	2 cut(s)	75, 568
Psp6I	CCWGG	1 cut(s)	376
PspGI	CCWGG	1 cut(s)	376
PspN4I	GGNNCC	2 cut(s)	142, 193
PspPI	GGNCC	3 cut(s)	141, 374, 616
PspXI	VCTCGAGB	1 cut(s)	64
PstNI	CAGNNNCTG	1 cut(s)	773
PsuI	RGATCY	1 cut(s)	407
PsyI	GACNNNGTC	1 cut(s)	80
PvuII	CAGCTG	1 cut(s)	815
RsaI	GTAC	2 cut(s)	208, 544
RsaNI	GTAC	2 cut(s)	207, 543
SapI	GCTCTTC	1 cut(s)	171
SaqAI	TTAA	3 cut(s)	651, 882, 972
SatI	GCNGC	3 cut(s)	642, 813, 861
Sau3AI	GATC	4 cut(s)	262, 407, 487, 756
Sau96I	GGNCC	3 cut(s)	141, 374, 616
SchI	GAGTC	2 cut(s)	76, 569
ScrFI	CCNGG	1 cut(s)	378
SduI	GDGCHC	2 cut(s)	153, 333
SfaNI	GCATC	1 cut(s)	263
SfcI	CTRYAG	1 cut(s)	681
Sfr274I	CTCGAG	1 cut(s)	64
SfuI	TTCGAA	1 cut(s)	244
SinI	GGWCC	2 cut(s)	141, 616
SlaI	CTCGAG	1 cut(s)	64
SmlI	CTYRAG	2 cut(s)	64, 801
SmoI	CTYRAG	2 cut(s)	64, 801
SphI	GCATGC	1 cut(s)	123
Sse9I	AATT	6 cut(s)	171, 246, 585, 648, 653, 936
SspMI	CTAG	2 cut(s)	368, 983
StyD4I	CCNGG	1 cut(s)	376
TaaI	ACNGT	5 cut(s)	10, 99, 160, 748, 769
TaqI	TCGA	3 cut(s)	65, 244, 552
TasI	AATT	6 cut(s)	171, 246, 585, 648, 653, 936
TatI	WGTACW	1 cut(s)	542
TfiI	GAWTC	2 cut(s)	17, 114
Tru1I	TTAA	3 cut(s)	651, 882, 972
Tru9I	TTAA	3 cut(s)	651, 882, 972
TscAI	CASTG	3 cut(s)	751, 802, 840
TseFI	GTSAC	1 cut(s)	10
TseI	GCWGC	3 cut(s)	641, 812, 860
Tsp45I	GTSAC	1 cut(s)	10
TspDTI	ATGAA	3 cut(s)	303, 584, 721
TspGWI	ACGGA	2 cut(s)	29, 60
TspRI	CASTG	3 cut(s)	751, 802, 840
Tth111I	GACNNNGTC	1 cut(s)	80
Van91I	CCANNNNNTGG	1 cut(s)	220
VneI	GTGCAC	1 cut(s)	329
VpaK11BI	GGWCC	2 cut(s)	141, 616
XapI	RAATTY	2 cut(s)	246, 653
XceI	RCATGY	2 cut(s)	123, 131
XhoI	CTCGAG	1 cut(s)	64
XmiI	GTMKAC	1 cut(s)	954
XspI	CTAG	2 cut(s)	368, 983

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.