Rmu_sc0001567.1_g000013

Exostosin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001567.1
OG0002953
Physical Location & Seq
Reverse (-)
92922 .. 96067
3146 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1074 bp
atgtccggcagggatggcgccattgactccacctcttgcttgaaaggccagtggggcactcaggtgaaaatacacaggctactgcaagaatcgagattccgaacgaggaagaaagaggaagcagacctgttttttgtgccggcgtatgcaaaatgtgttcgaatgatgggtggtcttaatgataaagagatcaaccagacatatgtgaaggtgttgagtcaaatgccgtatttcaggcgatctggtggtcgtgatcatatttttgtatttccaagtggagctggtgctcatttatttaggtcgtgggcaaaattcatcaatcgttccattattcttacccccgagggtgatcggactgataagaaagatacaagtgcctttgatacgtggaaagatatcatcattcctgggaatgttgatgatgggatgactacaaatggtgccaccctggtccgccctttgccactatcgaagcggaagtatcttgctaactatttaggtcgtgcacaaggaaaggctggccgccttaagttgatagagctttctaagaaatttccagataagttggaatctcctgagttgaagttcagtggccctgataaattgggaaagatagattattttgaacacctgcgcaacgccaagttctgccttgctccacgtggggagtcatcttggactcttcgtttttacgagtctttctttgtggagtgcgtcccagtgatattatcggatgaagtagaacttcctttccagaatgttgttgattacacccagatatcgattaaatggccgtcaactcgaataggtcctgagcttttgcagtacctagagtcaatatcagatgaaatcatagagggaatgataagccgtggtagacaagtaagatgtttatgggcctatgcttcagaatcagcttcatgttctgcaatgcatgcaattctttgggaacttcagagaaaagtcaggttgtttcaccaatcaactgaaacattctggctgcacgacggatctattgttaatagagaccgggtcaagttttctgattggaggcctccaatgcccttgccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin NAM

Protein Analysis

357

Amino Acids

40.97

Weight (kDa)

9.31

Isoelectric Point (pI)

48.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 10 - 269 5.3e-40 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 639
Acc16I TGCGCA 1 cut(s) 635
Acc36I ACCTGC 1 cut(s) 639
AccB1I GGYRCC 2 cut(s) 17, 440
AccI GTMKAC 1 cut(s) 877
AciI CCGC 3 cut(s) 454, 475, 523
AclWI GGATC 1 cut(s) 1018
AcoI YGGCCR 2 cut(s) 520, 791
AcsI RAATTY 2 cut(s) 311, 551
AcuI CTGAAG 2 cut(s) 891, 938
AcvI CACGTG 1 cut(s) 662
AcyI GRCGYC 1 cut(s) 18
AfaI GTAC 1 cut(s) 827
AflII CTTAAG 1 cut(s) 527
AgsI TTSAA 3 cut(s) 43, 583, 626
AjnI CCWGG 2 cut(s) 406, 447
AleI CACNNNNGTG 1 cut(s) 62
AloI GAACNNNNNNTCC 2 cut(s) 735, 767
AluBI AGCT 4 cut(s) 281, 541, 817, 917
AluI AGCT 4 cut(s) 281, 541, 817, 917
Alw21I GWGCWC 2 cut(s) 289, 508
Alw26I GTCTC 1 cut(s) 1020
Alw44I GTGCAC 1 cut(s) 504
AlwI GGATC 1 cut(s) 1018
Ama87I CYCGRG 1 cut(s) 341
AoxI GGCC 6 cut(s) 46, 520, 592, 791, 897, 1052
ApaLI GTGCAC 1 cut(s) 504
ApeKI GCWGC 1 cut(s) 1000
ApoI RAATTY 2 cut(s) 311, 551
ArsI GACNNNNNNTTYG 2 cut(s) 116, 148
AspLEI GCGC 2 cut(s) 20, 636
AspS9I GGNCC 4 cut(s) 451, 593, 809, 897
AsuC2I CCSGG 1 cut(s) 1031
AsuHPI GGTGA 3 cut(s) 76, 359, 968
AsuII TTCGAA 1 cut(s) 160
AvaI CYCGRG 1 cut(s) 341
AvaII GGWCC 2 cut(s) 451, 809
BaeGI GKGCMC 2 cut(s) 59, 508
BanI GGYRCC 2 cut(s) 17, 440
BbrPI CACGTG 1 cut(s) 662
Bbv12I GWGCWC 2 cut(s) 289, 508
BbvI GCAGC 1 cut(s) 987
BccI CCATC 3 cut(s) 8, 160, 416
BceAI ACGGC 3 cut(s) 211, 778, 855
BciT130I CCWGG 2 cut(s) 408, 449
BclI TGATCA 1 cut(s) 253
BcnI CCSGG 1 cut(s) 1031
BcoDI GTCTC 1 cut(s) 1020
BfaI CTAG 1 cut(s) 830
BfoI RGCGCY 1 cut(s) 21
BfrI CTTAAG 1 cut(s) 527
BfuAI ACCTGC 1 cut(s) 639
BglI GCCNNNNNGGC 1 cut(s) 54
BisI GCNGC 2 cut(s) 523, 1001
BlsI GCNGC 2 cut(s) 524, 1002
Bme1390I CCNGG 3 cut(s) 408, 449, 1031
Bme18I GGWCC 2 cut(s) 451, 809
BmeT110I CYCGRG 1 cut(s) 341
BmgT120I GGNCC 4 cut(s) 451, 593, 809, 897
BmiI GGNNCC 2 cut(s) 19, 442
BmrFI CCNGG 3 cut(s) 408, 449, 1031
BmrI ACTGGG 1 cut(s) 713
BmuI ACTGGG 1 cut(s) 713
Bpu10I CCTNAGC 1 cut(s) 813
Bpu14I TTCGAA 1 cut(s) 160
BpuMI CCSGG 1 cut(s) 1031
Bsa29I ATCGAT 1 cut(s) 782
BsaAI YACGTR 2 cut(s) 387, 662
BsaHI GRCGYC 1 cut(s) 18
BsaI GGTCTC 1 cut(s) 1020
BsaJI CCNNGG 4 cut(s) 342, 407, 447, 871
Bse118I RCCGGY 1 cut(s) 139
Bse1I ACTGG 2 cut(s) 49, 719
Bse3DI GCAATG 1 cut(s) 936
BseBI CCWGG 2 cut(s) 408, 449
BseCI ATCGAT 1 cut(s) 782
BseDI CCNNGG 4 cut(s) 342, 407, 447, 871
BseGI GGATG 3 cut(s) 19, 432, 739
BseMI GCAATG 1 cut(s) 936
BseMII CTCAG 3 cut(s) 74, 567, 804
BseNI ACTGG 2 cut(s) 49, 719
BseSI GKGCMC 2 cut(s) 59, 508
BseXI GCAGC 1 cut(s) 987
BsgI GTGCAG 1 cut(s) 986
BshFI GGCC 6 cut(s) 48, 522, 594, 793, 899, 1054
BshNI GGYRCC 2 cut(s) 17, 440
BshVI ATCGAT 1 cut(s) 782
BsiHKAI GWGCWC 2 cut(s) 289, 508
BsiHKCI CYCGRG 1 cut(s) 341
BsiSI CCGG 3 cut(s) 6, 140, 1030
BslFI GGGAC 1 cut(s) 701
BsmAI GTCTC 1 cut(s) 1020
BsmFI GGGAC 1 cut(s) 701
BsnI GGCC 6 cut(s) 48, 522, 594, 793, 899, 1054
Bso31I GGTCTC 1 cut(s) 1020
BsoBI CYCGRG 1 cut(s) 341
Bsp119I TTCGAA 1 cut(s) 160
Bsp1286I GDGCHC 3 cut(s) 59, 289, 508
Bsp143I GATC 5 cut(s) 189, 239, 253, 349, 1010
BspACI CCGC 3 cut(s) 454, 475, 523
BspANI GGCC 6 cut(s) 48, 522, 594, 793, 899, 1054
BspCNI CTCAG 3 cut(s) 73, 568, 805
BspDI ATCGAT 1 cut(s) 782
BspLI GGNNCC 2 cut(s) 19, 442
BspMI ACCTGC 1 cut(s) 639
BspPI GGATC 1 cut(s) 1018
BspT104I TTCGAA 1 cut(s) 160
BspT107I GGYRCC 2 cut(s) 17, 440
BspTI CTTAAG 1 cut(s) 527
BspTNI GGTCTC 1 cut(s) 1020
BsrDI GCAATG 1 cut(s) 936
BsrFI RCCGGY 1 cut(s) 139
BsrI ACTGG 2 cut(s) 49, 719
BssAI RCCGGY 1 cut(s) 139
BssECI CCNNGG 4 cut(s) 342, 407, 447, 871
BssMI GATC 5 cut(s) 189, 239, 253, 349, 1010
BssNI GRCGYC 1 cut(s) 18
Bst2UI CCWGG 2 cut(s) 408, 449
Bst6I CTCTTC 1 cut(s) 687
BstACI GRCGYC 1 cut(s) 18
BstAFI CTTAAG 1 cut(s) 527
BstAPI GCANNNNNTGC 1 cut(s) 935
BstBAI YACGTR 2 cut(s) 387, 662
BstBI TTCGAA 1 cut(s) 160
BstC8I GCNNGC 3 cut(s) 141, 520, 936
BstDEI CTNAG 4 cut(s) 60, 546, 576, 813
BstDSI CCRYGG 1 cut(s) 871
BstF5I GGATG 3 cut(s) 19, 432, 739
BstH2I RGCGCY 1 cut(s) 21
BstHHI GCGC 2 cut(s) 20, 636
BstKTI GATC 5 cut(s) 192, 242, 256, 352, 1013
BstMAI GTCTC 1 cut(s) 1020
BstMBI GATC 5 cut(s) 189, 239, 253, 349, 1010
BstMWI GCNNNNNNNGC 5 cut(s) 15, 45, 54, 935, 1060
BstNI CCWGG 2 cut(s) 408, 449
BstNSI RCATGY 1 cut(s) 938
BstSCI CCNGG 3 cut(s) 406, 447, 1029
BstSLI GKGCMC 2 cut(s) 59, 508
BstV1I GCAGC 1 cut(s) 987
BstX2I RGATCY 1 cut(s) 1010
BstYI RGATCY 1 cut(s) 1010
Bsu15I ATCGAT 1 cut(s) 782
BsuRI GGCC 6 cut(s) 48, 522, 594, 793, 899, 1054
BsuTUI ATCGAT 1 cut(s) 782
BtgI CCRYGG 1 cut(s) 871
BtsCI GGATG 3 cut(s) 19, 432, 739
BtsIMutI CAGTG 3 cut(s) 56, 595, 726
BveI ACCTGC 1 cut(s) 639
Cac8I GCNNGC 3 cut(s) 141, 520, 936
CfoI GCGC 2 cut(s) 20, 636
Cfr10I RCCGGY 1 cut(s) 139
Cfr13I GGNCC 4 cut(s) 451, 593, 809, 897
ClaI ATCGAT 1 cut(s) 782
CseI GACGC 1 cut(s) 703
Csp6I GTAC 1 cut(s) 826
CviAII CATG 2 cut(s) 921, 935
CviQI GTAC 1 cut(s) 826
DdeI CTNAG 4 cut(s) 60, 546, 576, 813
DinI GGCGCC 1 cut(s) 19
DpnI GATC 5 cut(s) 191, 241, 255, 351, 1012
DpnII GATC 5 cut(s) 189, 239, 253, 349, 1010
EaeI YGGCCR 2 cut(s) 520, 791
Eam1104I CTCTTC 1 cut(s) 687
EarI CTCTTC 1 cut(s) 687
EciI GGCGGA 1 cut(s) 443
Eco147I AGGCCT 1 cut(s) 1054
Eco31I GGTCTC 1 cut(s) 1020
Eco32I GATATC 2 cut(s) 397, 780
Eco47I GGWCC 2 cut(s) 451, 809
Eco57I CTGAAG 2 cut(s) 891, 938
Eco72I CACGTG 1 cut(s) 662
Eco88I CYCGRG 1 cut(s) 341
EcoO109I RGGNCCY 1 cut(s) 809
EcoRII CCWGG 2 cut(s) 406, 447
EcoRV GATATC 2 cut(s) 397, 780
EcoT22I ATGCAT 1 cut(s) 936
EgeI GGCGCC 1 cut(s) 19
EheI GGCGCC 1 cut(s) 19
FaeI CATG 2 cut(s) 924, 938
FaiI YATR 9 cut(s) 147, 202, 204, 258, 854, 895, 903, 922, 936
FalI AAGNNNNNCTT 2 cut(s) 729, 761
FaqI GGGAC 1 cut(s) 701
FatI CATG 2 cut(s) 920, 934
FauNDI CATATG 1 cut(s) 202
FbaI TGATCA 1 cut(s) 253
FblI GTMKAC 1 cut(s) 877
Fnu4HI GCNGC 2 cut(s) 523, 1001
FokI GGATG 3 cut(s) 26, 439, 746
Fsp4HI GCNGC 2 cut(s) 523, 1001
FspBI CTAG 1 cut(s) 830
FspI TGCGCA 1 cut(s) 635
GlaI GCGC 2 cut(s) 19, 635
GluI GCNGC 2 cut(s) 523, 1001
HaeII RGCGCY 1 cut(s) 21
HaeIII GGCC 6 cut(s) 48, 522, 594, 793, 899, 1054
HapII CCGG 3 cut(s) 6, 140, 1030
HgaI GACGC 1 cut(s) 703
HhaI GCGC 2 cut(s) 20, 636
Hin1I GRCGYC 1 cut(s) 18
Hin1II CATG 2 cut(s) 924, 938
Hin6I GCGC 2 cut(s) 18, 634
HinP1I GCGC 2 cut(s) 18, 634
HincII GTYRAC 1 cut(s) 798
HindII GTYRAC 1 cut(s) 798
HpaII CCGG 3 cut(s) 6, 140, 1030
HphI GGTGA 3 cut(s) 76, 359, 968
Hpy166II GTNNAC 3 cut(s) 506, 798, 878
Hpy188I TCNGA 7 cut(s) 101, 354, 733, 844, 910, 957, 1045
Hpy188III TCNNGA 6 cut(s) 93, 251, 557, 575, 754, 812
Hpy8I GTNNAC 3 cut(s) 506, 798, 878
Hpy99I CGWCG 1 cut(s) 1010
HpyAV CCTTC 1 cut(s) 202
HpyCH4IV ACGT 2 cut(s) 386, 661
HpyCH4V TGCA 8 cut(s) 85, 149, 506, 823, 929, 934, 938, 1003
HpyF10VI GCNNNNNNNGC 5 cut(s) 15, 45, 54, 935, 1060
HpyF3I CTNAG 4 cut(s) 60, 546, 576, 813
HpySE526I ACGT 2 cut(s) 386, 661
Hsp92I GRCGYC 1 cut(s) 18
Hsp92II CATG 2 cut(s) 924, 938
HspAI GCGC 2 cut(s) 18, 634
KasI GGCGCC 1 cut(s) 17
KroI GCCGGC 1 cut(s) 139
KroNI GCCGGC 1 cut(s) 141
Ksp22I TGATCA 1 cut(s) 253
Kzo9I GATC 5 cut(s) 189, 239, 253, 349, 1010
LmnI GCTCC 2 cut(s) 278, 661
Lsp1109I GCAGC 1 cut(s) 987
MaeI CTAG 1 cut(s) 830
MaeII ACGT 2 cut(s) 386, 661
MalI GATC 5 cut(s) 191, 241, 255, 351, 1012
MboI GATC 5 cut(s) 189, 239, 253, 349, 1010
MboII GAAGA 2 cut(s) 121, 674
MflI RGATCY 1 cut(s) 1010
MhlI GDGCHC 3 cut(s) 59, 289, 508
MluCI AATT 4 cut(s) 311, 551, 602, 939
Mly113I GGCGCC 1 cut(s) 18
MlyI GAGTC 6 cut(s) 20, 226, 673, 677, 704, 842
MmeI TCCRAC 1 cut(s) 546
MnlI CCTC 7 cut(s) 43, 99, 109, 337, 850, 1044, 1065
Mph1103I ATGCAT 1 cut(s) 936
MroNI GCCGGC 1 cut(s) 139
MseI TTAA 4 cut(s) 177, 528, 786, 1020
MslI CAYNNNNRTG 1 cut(s) 62
MspCI CTTAAG 1 cut(s) 527
MspI CCGG 3 cut(s) 6, 140, 1030
MspR9I CCNGG 3 cut(s) 408, 449, 1031
MvaI CCWGG 2 cut(s) 408, 449
MwoI GCNNNNNNNGC 5 cut(s) 15, 45, 54, 935, 1060
NaeI GCCGGC 1 cut(s) 141
NarI GGCGCC 1 cut(s) 18
NciI CCSGG 1 cut(s) 1031
NdeI CATATG 1 cut(s) 202
NdeII GATC 5 cut(s) 189, 239, 253, 349, 1010
NgoMIV GCCGGC 1 cut(s) 139
NlaIII CATG 2 cut(s) 924, 938
NlaIV GGNNCC 2 cut(s) 19, 442
NsbI TGCGCA 1 cut(s) 635
NsiI ATGCAT 1 cut(s) 936
NspI RCATGY 1 cut(s) 938
NspV TTCGAA 1 cut(s) 160
OliI CACNNNNGTG 1 cut(s) 62
PaeI GCATGC 1 cut(s) 938
PaqCI CACCTGC 1 cut(s) 639
PceI AGGCCT 1 cut(s) 1054
PdiI GCCGGC 1 cut(s) 141
PfeI GAWTC 4 cut(s) 89, 96, 569, 911
PflFI GACNNNGTC 1 cut(s) 1031
PkrI GCNGC 2 cut(s) 524, 1002
PleI GAGTC 6 cut(s) 20, 225, 673, 676, 703, 841
PluTI GGCGCC 1 cut(s) 21
PmaCI CACGTG 1 cut(s) 662
PmlI CACGTG 1 cut(s) 662
PpsI GAGTC 6 cut(s) 20, 225, 673, 676, 703, 841
Ppu21I YACGTR 2 cut(s) 387, 662
PpuMI RGGWCCY 1 cut(s) 809
Psp5II RGGWCCY 1 cut(s) 809
Psp6I CCWGG 2 cut(s) 406, 447
PspCI CACGTG 1 cut(s) 662
PspGI CCWGG 2 cut(s) 406, 447
PspN4I GGNNCC 2 cut(s) 19, 442
PspPI GGNCC 4 cut(s) 451, 593, 809, 897
PspPPI RGGWCCY 1 cut(s) 809
PsuI RGATCY 1 cut(s) 1010
PsyI GACNNNGTC 1 cut(s) 1031
RsaI GTAC 1 cut(s) 827
RsaNI GTAC 1 cut(s) 826
RseI CAYNNNNRTG 1 cut(s) 62
SaqAI TTAA 4 cut(s) 177, 528, 786, 1020
SatI GCNGC 2 cut(s) 523, 1001
Sau3AI GATC 5 cut(s) 189, 239, 253, 349, 1010
Sau96I GGNCC 4 cut(s) 451, 593, 809, 897
SchI GAGTC 6 cut(s) 20, 226, 673, 677, 704, 842
ScrFI CCNGG 3 cut(s) 408, 449, 1031
SduI GDGCHC 3 cut(s) 59, 289, 508
SfoI GGCGCC 1 cut(s) 19
SfuI TTCGAA 1 cut(s) 160
SinI GGWCC 2 cut(s) 451, 809
SmiMI CAYNNNNRTG 1 cut(s) 62
SmlI CTYRAG 1 cut(s) 527
SmoI CTYRAG 1 cut(s) 527
SphI GCATGC 1 cut(s) 938
Sse9I AATT 4 cut(s) 311, 551, 602, 939
SseBI AGGCCT 1 cut(s) 1054
SsiI CCGC 3 cut(s) 454, 475, 523
SspDI GGCGCC 1 cut(s) 17
SspMI CTAG 1 cut(s) 830
StuI AGGCCT 1 cut(s) 1054
StyD4I CCNGG 3 cut(s) 406, 447, 1029
TaiI ACGT 2 cut(s) 389, 664
TaqI TCGA 5 cut(s) 92, 160, 470, 782, 802
TasI AATT 4 cut(s) 311, 551, 602, 939
TauI GCSGC 1 cut(s) 525
TfiI GAWTC 4 cut(s) 89, 96, 569, 911
Tru1I TTAA 4 cut(s) 177, 528, 786, 1020
Tru9I TTAA 4 cut(s) 177, 528, 786, 1020
TscAI CASTG 3 cut(s) 56, 595, 726
TseI GCWGC 1 cut(s) 1000
TspDTI ATGAA 4 cut(s) 304, 750, 861, 909
TspGWI ACGGA 1 cut(s) 1023
TspRI CASTG 3 cut(s) 56, 595, 726
Tth111I GACNNNGTC 1 cut(s) 1031
Vha464I CTTAAG 1 cut(s) 527
VneI GTGCAC 1 cut(s) 504
VpaK11BI GGWCC 2 cut(s) 451, 809
XapI RAATTY 2 cut(s) 311, 551
XceI RCATGY 1 cut(s) 938
XmiI GTMKAC 1 cut(s) 877
XspI CTAG 1 cut(s) 830
Zsp2I ATGCAT 1 cut(s) 936
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.