Rmu_sc0001665.1_g000043

transcriptional co-repressor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001665.1
OG0012593
Physical Location & Seq
Forward (+)
183223 .. 186122
2900 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 990 bp
atggtgggtcgcctcttgagacaaattgcagagccccagcaacaacctgatcaacagcagttactagagggtgacagagagaggaggacagaatcaggagctgggaggacagcatcaggagctggagacagtcatttggaaaataggagtgctaatgaagatgcccctgtggaagaaaataccgagtctttcttgtcctatgaggatgacagtgctggtggtggtacaagcactccattcaaggcttcaaagcgtcgtggtgggaaaaaaaagcaagaaagggatgtacggtttagaccaaattcaacaacgtttgcaacatcttcgtttgatagaaatgtgaagatatgggatgcagccagaccaagtgaatcaatatccaagcttgaagggcacactgagcatgtaatgtcagtggattttcacccaaggaagttcaatctcctttcatcatgcgatagtaacgatgaaatccgactgtggaatgtcaaccaatctaagtgcacaagcatgtttaagggagcaactaaacaagtcagattccagcctcgatttggaaaatatttggctgctgcttcaggaaatagtgtcaatacttttgatgttgagactgccagtttcgacttgtattcgaagggatctggacatgccaaagatgtcctttcaatttgctgggatacaagtgggaagtatcttgcctctgttagtgaagacagtgcacggatttggtcaactgcatcaagcggaaaatgcatatatgaactccactcaaatggcaacaaattccaatcatgcacatttcatcctggatattcactactcttgatcattggttgttacgagtcccttgagttgtggagtccaagtgagagcaataaaactatgactgttccagcgcacaaggggctagttgctgcactggcgtcatccccaaagactgacatggttgcctctgggagccatgatcaggtcgtcaaactatggaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0001558 GO:0001666 GO:0003002 GO:0003006 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009798 GO:0009845 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010154 GO:0010191 GO:0010214 GO:0010243 GO:0010272 GO:0010393 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0036293 GO:0040008 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045892 GO:0045927 GO:0045934 GO:0045995 GO:0046677 GO:0046898 GO:0048316 GO:0048359 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048638 GO:0048639 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051510 GO:0051512 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060992 GO:0061458 GO:0065001 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0071704 GO:0080001 GO:0080090 GO:0090351 GO:0097305 GO:1901654 GO:1901698 GO:1901700 GO:1902074 GO:1902183 GO:1902679 GO:1903506 GO:1903507 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LisH WD40

Protein Analysis

329

Amino Acids

36.25

Weight (kDa)

7.65

Isoelectric Point (pI)

52.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR5 PF25175 88 - 179 1e-15 WDR5 beta-propeller domain
WDR55 PF24796 88 - 329 7.1e-10 WDR55
WD40_Prp19 PF24814 89 - 238 1.9e-17 Prp19 WD40 domain
Beta-prop_EML_2 PF23414 89 - 170 1.6e-07 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_THOC3 PF25174 91 - 204 3.6e-17 THOC3 beta-propeller domain
Beta-prop_WDR3_1st PF25173 94 - 179 1.6e-11 WDR3 first beta-propeller domain
WD40_WDHD1_1st PF24817 94 - 272 1.2e-19 WDHD1 first WD40 domain
WD40_CDC20-Fz PF24807 94 - 170 2.5e-08 CDC20/Fizzy WD40 domain
Beta-prop_Aladin PF25460 95 - 245 1.6e-07 Aladin seven-bladed propeller
Beta-prop_WDR3_2nd PF25172 95 - 163 1.4e-06 WDR3 second beta-propeller domain
WD40_Gbeta PF25391 104 - 246 4.5e-07 G protein beta WD-40 repeat protein
WD40_CDC20-Fz PF24807 148 - 278 7.9e-10 CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st PF25173 155 - 329 3.6e-19 WDR3 first beta-propeller domain
Beta-prop_WDR36-Utp21_1st PF25171 160 - 325 5e-07 WDR36/Utp21 first beta-propeller
Beta-prop_EML_2 PF23414 175 - 252 1.4e-06 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR5 PF25175 176 - 328 5.4e-22 WDR5 beta-propeller domain
WD40_Prp19 PF24814 178 - 328 7.8e-15 Prp19 WD40 domain
Beta-prop_THOC3 PF25174 178 - 328 2.9e-17 THOC3 beta-propeller domain
Beta-prop_WDR3_2nd PF25172 219 - 329 8.9e-11 WDR3 second beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 744
AclI AACGTT 1 cut(s) 311
AclWI GGATC 1 cut(s) 646
AcsI RAATTY 2 cut(s) 301, 782
AcuI CTGAAG 1 cut(s) 561
AcyI GRCGYC 1 cut(s) 923
AfaI GTAC 2 cut(s) 226, 288
AfiI CCNNNNNNNGG 2 cut(s) 554, 967
AgsI TTSAA 6 cut(s) 241, 249, 306, 389, 439, 666
AjnI CCWGG 1 cut(s) 805
AluBI AGCT 3 cut(s) 101, 122, 385
AluI AGCT 3 cut(s) 101, 122, 385
Alw21I GWGCWC 2 cut(s) 506, 721
Alw26I GTCTC 3 cut(s) 13, 120, 602
Alw44I GTGCAC 2 cut(s) 502, 717
AlwI GGATC 1 cut(s) 646
AlwNI CAGNNNCTG 2 cut(s) 101, 122
ApaLI GTGCAC 2 cut(s) 502, 717
ApeKI GCWGC 4 cut(s) 356, 569, 572, 914
ApoI RAATTY 2 cut(s) 301, 782
AspLEI GCGC 1 cut(s) 898
AsuHPI GGTGA 2 cut(s) 83, 416
AsuII TTCGAA 1 cut(s) 632
BaeGI GKGCMC 3 cut(s) 396, 506, 721
BanII GRGCYC 1 cut(s) 36
BbsI GAAGAC 1 cut(s) 717
Bbv12I GWGCWC 2 cut(s) 506, 721
BbvI GCAGC 4 cut(s) 368, 556, 559, 901
BcgI CGANNNNNNTGC 2 cut(s) 306, 340
BciT130I CCWGG 1 cut(s) 807
BciVI GTATCC 1 cut(s) 670
BclI TGATCA 3 cut(s) 49, 825, 964
BcoDI GTCTC 3 cut(s) 13, 120, 602
BfaI CTAG 2 cut(s) 65, 908
BfuI GTATCC 1 cut(s) 670
BisI GCNGC 4 cut(s) 357, 570, 573, 915
BlsI GCNGC 4 cut(s) 358, 571, 574, 916
Bme1390I CCNGG 1 cut(s) 807
BmiI GGNNCC 1 cut(s) 959
BmrFI CCNGG 1 cut(s) 807
BmsI GCATC 4 cut(s) 122, 151, 343, 746
BpiI GAAGAC 1 cut(s) 717
BpmI CTGGAG 1 cut(s) 144
Bpu14I TTCGAA 1 cut(s) 632
BpuEI CTTGAG 2 cut(s) 37, 869
BsaHI GRCGYC 1 cut(s) 923
BsaJI CCNNGG 1 cut(s) 428
BsaXI ACNNNNNCTCC 4 cut(s) 217, 247, 850, 880
Bsc4I CCNNNNNNNGG 2 cut(s) 554, 967
Bse1I ACTGG 2 cut(s) 615, 924
BseBI CCWGG 1 cut(s) 807
BseDI CCNNGG 1 cut(s) 428
BseGI GGATG 5 cut(s) 211, 289, 358, 802, 926
BseLI CCNNNNNNNGG 2 cut(s) 554, 967
BseMII CTCAG 1 cut(s) 390
BseNI ACTGG 2 cut(s) 615, 924
BseRI GAGGAG 1 cut(s) 97
BseSI GKGCMC 3 cut(s) 396, 506, 721
BseXI GCAGC 4 cut(s) 368, 556, 559, 901
BseYI CCCAGC 3 cut(s) 36, 101, 672
BsgI GTGCAG 1 cut(s) 900
BsiHKAI GWGCWC 2 cut(s) 506, 721
BslFI GGGAC 1 cut(s) 829
BslI CCNNNNNNNGG 2 cut(s) 554, 967
BsmAI GTCTC 3 cut(s) 13, 120, 602
BsmFI GGGAC 1 cut(s) 829
Bsp119I TTCGAA 1 cut(s) 632
Bsp1286I GDGCHC 4 cut(s) 36, 396, 506, 721
Bsp143I GATC 4 cut(s) 49, 638, 825, 964
BspACI CCGC 1 cut(s) 744
BspCNI CTCAG 1 cut(s) 391
BspLI GGNNCC 1 cut(s) 959
BspPI GGATC 1 cut(s) 646
BspT104I TTCGAA 1 cut(s) 632
BsrI ACTGG 2 cut(s) 615, 924
BssECI CCNNGG 1 cut(s) 428
BssMI GATC 4 cut(s) 49, 638, 825, 964
BssNI GRCGYC 1 cut(s) 923
BssT1I CCWWGG 1 cut(s) 428
Bst2UI CCWGG 1 cut(s) 807
Bst4CI ACNGT 6 cut(s) 131, 212, 291, 480, 716, 889
BstACI GRCGYC 1 cut(s) 923
BstBI TTCGAA 1 cut(s) 632
BstDEI CTNAG 2 cut(s) 399, 498
BstF5I GGATG 5 cut(s) 211, 289, 358, 802, 926
BstHHI GCGC 1 cut(s) 898
BstKTI GATC 4 cut(s) 52, 641, 828, 967
BstMAI GTCTC 3 cut(s) 13, 120, 602
BstMBI GATC 4 cut(s) 49, 638, 825, 964
BstMWI GCNNNNNNNGC 6 cut(s) 119, 391, 400, 750, 904, 920
BstNI CCWGG 1 cut(s) 807
BstNSI RCATGY 3 cut(s) 407, 514, 650
BstSCI CCNGG 1 cut(s) 805
BstSLI GKGCMC 3 cut(s) 396, 506, 721
BstV1I GCAGC 4 cut(s) 368, 556, 559, 901
BstV2I GAAGAC 1 cut(s) 717
BstX2I RGATCY 1 cut(s) 638
BstXI CCANNNNNNTGG 1 cut(s) 773
BstYI RGATCY 1 cut(s) 638
BsuI GTATCC 1 cut(s) 670
BtsCI GGATG 5 cut(s) 211, 289, 358, 802, 926
BtsIMutI CAGTG 5 cut(s) 217, 396, 420, 721, 917
CaiI CAGNNNCTG 2 cut(s) 101, 122
CfoI GCGC 1 cut(s) 898
CseI GACGC 2 cut(s) 242, 912
Csp6I GTAC 2 cut(s) 225, 287
CviAII CATG 7 cut(s) 404, 453, 511, 647, 792, 943, 962
CviQI GTAC 2 cut(s) 225, 287
DdeI CTNAG 2 cut(s) 399, 498
DpnI GATC 4 cut(s) 51, 640, 827, 966
DpnII GATC 4 cut(s) 49, 638, 825, 964
Eco130I CCWWGG 1 cut(s) 428
Eco24I GRGCYC 1 cut(s) 36
Eco57I CTGAAG 1 cut(s) 561
EcoRII CCWGG 1 cut(s) 805
EcoT14I CCWWGG 1 cut(s) 428
EcoT22I ATGCAT 1 cut(s) 755
EcoT38I GRGCYC 1 cut(s) 36
ErhI CCWWGG 1 cut(s) 428
FaeI CATG 7 cut(s) 407, 456, 514, 650, 795, 946, 965
FalI AAGNNNNNCTT 2 cut(s) 645, 677
FaqI GGGAC 1 cut(s) 829
FatI CATG 7 cut(s) 403, 452, 510, 646, 791, 942, 961
FbaI TGATCA 3 cut(s) 49, 825, 964
Fnu4HI GCNGC 4 cut(s) 357, 570, 573, 915
FokI GGATG 5 cut(s) 218, 296, 365, 789, 913
FriOI GRGCYC 1 cut(s) 36
Fsp4HI GCNGC 4 cut(s) 357, 570, 573, 915
FspBI CTAG 2 cut(s) 65, 908
GlaI GCGC 1 cut(s) 897
GluI GCNGC 4 cut(s) 357, 570, 573, 915
GsaI CCCAGC 3 cut(s) 40, 105, 676
GsuI CTGGAG 1 cut(s) 144
HgaI GACGC 2 cut(s) 242, 912
HhaI GCGC 1 cut(s) 898
Hin1I GRCGYC 1 cut(s) 923
Hin1II CATG 7 cut(s) 407, 456, 514, 650, 795, 946, 965
Hin6I GCGC 1 cut(s) 896
HinP1I GCGC 1 cut(s) 896
HincII GTYRAC 2 cut(s) 490, 732
HindII GTYRAC 2 cut(s) 490, 732
HindIII AAGCTT 1 cut(s) 383
HinfI GANTC 6 cut(s) 92, 185, 371, 540, 842, 859
HphI GGTGA 2 cut(s) 83, 416
Hpy166II GTNNAC 4 cut(s) 490, 504, 719, 732
Hpy188I TCNGA 2 cut(s) 476, 539
Hpy188III TCNNGA 6 cut(s) 16, 96, 117, 579, 642, 823
Hpy8I GTNNAC 4 cut(s) 490, 504, 719, 732
Hpy99I CGWCG 1 cut(s) 258
HpyAV CCTTC 2 cut(s) 383, 628
HpyCH4III ACNGT 6 cut(s) 131, 212, 291, 480, 716, 889
HpyCH4IV ACGT 1 cut(s) 311
HpyCH4V TGCA 9 cut(s) 29, 317, 356, 504, 719, 737, 753, 795, 917
HpyF10VI GCNNNNNNNGC 6 cut(s) 119, 391, 400, 750, 904, 920
HpyF3I CTNAG 2 cut(s) 399, 498
HpySE526I ACGT 1 cut(s) 311
Hsp92I GRCGYC 1 cut(s) 923
Hsp92II CATG 7 cut(s) 407, 456, 514, 650, 795, 946, 965
HspAI GCGC 1 cut(s) 896
Ksp22I TGATCA 3 cut(s) 49, 825, 964
Kzo9I GATC 4 cut(s) 49, 638, 825, 964
LmnI GCTCC 4 cut(s) 98, 119, 521, 957
Lsp1109I GCAGC 4 cut(s) 368, 556, 559, 901
LweI GCATC 4 cut(s) 122, 151, 343, 746
MaeI CTAG 2 cut(s) 65, 908
MaeII ACGT 1 cut(s) 311
MaeIII GTNAC 4 cut(s) 60, 71, 461, 836
MalI GATC 4 cut(s) 51, 640, 827, 966
MboI GATC 4 cut(s) 49, 638, 825, 964
MboII GAAGA 5 cut(s) 170, 185, 315, 355, 722
MflI RGATCY 1 cut(s) 638
MhlI GDGCHC 4 cut(s) 36, 396, 506, 721
MluCI AATT 4 cut(s) 24, 301, 666, 782
MlyI GAGTC 3 cut(s) 194, 851, 868
MmeI TCCRAC 1 cut(s) 499
MnlI CCTC 9 cut(s) 23, 61, 75, 78, 99, 196, 558, 709, 961
Mph1103I ATGCAT 1 cut(s) 755
MseI TTAA 1 cut(s) 516
MslI CAYNNNNRTG 2 cut(s) 509, 771
MspR9I CCNGG 1 cut(s) 807
MvaI CCWGG 1 cut(s) 807
MwoI GCNNNNNNNGC 6 cut(s) 119, 391, 400, 750, 904, 920
NdeII GATC 4 cut(s) 49, 638, 825, 964
NlaIII CATG 7 cut(s) 407, 456, 514, 650, 795, 946, 965
NlaIV GGNNCC 1 cut(s) 959
NmuCI GTSAC 1 cut(s) 71
NsiI ATGCAT 1 cut(s) 755
NspI RCATGY 3 cut(s) 407, 514, 650
NspV TTCGAA 1 cut(s) 632
PfeI GAWTC 3 cut(s) 92, 371, 540
PfoI TCCNGGA 1 cut(s) 805
PkrI GCNGC 4 cut(s) 358, 571, 574, 916
PleI GAGTC 3 cut(s) 193, 850, 867
PpsI GAGTC 3 cut(s) 193, 850, 867
Psp1406I AACGTT 1 cut(s) 311
Psp6I CCWGG 1 cut(s) 805
PspFI CCCAGC 3 cut(s) 36, 101, 672
PspGI CCWGG 1 cut(s) 805
PspN4I GGNNCC 1 cut(s) 959
PstNI CAGNNNCTG 2 cut(s) 101, 122
PsuI RGATCY 1 cut(s) 638
RsaI GTAC 2 cut(s) 226, 288
RsaNI GTAC 2 cut(s) 225, 287
RseI CAYNNNNRTG 2 cut(s) 509, 771
SaqAI TTAA 1 cut(s) 516
SatI GCNGC 4 cut(s) 357, 570, 573, 915
Sau3AI GATC 4 cut(s) 49, 638, 825, 964
SchI GAGTC 3 cut(s) 194, 851, 868
ScrFI CCNGG 1 cut(s) 807
SduI GDGCHC 4 cut(s) 36, 396, 506, 721
SetI ASST 6 cut(s) 49, 103, 124, 314, 387, 972
SfaNI GCATC 4 cut(s) 122, 151, 343, 746
SfuI TTCGAA 1 cut(s) 632
SmiMI CAYNNNNRTG 2 cut(s) 509, 771
SmlI CTYRAG 2 cut(s) 16, 848
SmoI CTYRAG 2 cut(s) 16, 848
Sse9I AATT 4 cut(s) 24, 301, 666, 782
SsiI CCGC 1 cut(s) 744
SspI AATATT 1 cut(s) 563
SspMI CTAG 2 cut(s) 65, 908
StyD4I CCNGG 1 cut(s) 805
StyI CCWWGG 1 cut(s) 428
TaaI ACNGT 6 cut(s) 131, 212, 291, 480, 716, 889
TaiI ACGT 1 cut(s) 314
TaqI TCGA 3 cut(s) 550, 621, 632
TasI AATT 4 cut(s) 24, 301, 666, 782
TfiI GAWTC 3 cut(s) 92, 371, 540
Tru1I TTAA 1 cut(s) 516
Tru9I TTAA 1 cut(s) 516
TscAI CASTG 5 cut(s) 217, 403, 420, 721, 924
TseFI GTSAC 1 cut(s) 71
TseI GCWGC 4 cut(s) 356, 569, 572, 914
Tsp45I GTSAC 1 cut(s) 71
TspDTI ATGAA 5 cut(s) 171, 438, 483, 774, 791
TspGWI ACGGA 1 cut(s) 736
TspRI CASTG 5 cut(s) 217, 403, 420, 721, 924
VneI GTGCAC 2 cut(s) 502, 717
XapI RAATTY 2 cut(s) 301, 782
XceI RCATGY 3 cut(s) 407, 514, 650
XcmI CCANNNNNNNNNTGG 1 cut(s) 551
XspI CTAG 2 cut(s) 65, 908
Zsp2I ATGCAT 1 cut(s) 755
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.