Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001670.1

Orthogroup ID

OG0015074

Physical Location & Seq

Genomic Coordinates Reverse (-)

24589 .. 25448

Gene Structure 860 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

atgacctcaaacaagcccaatctctatcttcttcctttgatcattattgcatcattagctacagcaaacctagtttccgcaaccgtttttacgctgcaaaaccgatgcccctacacagtctggcccggcacactctccggaaacggcgccgcagttctcggcgaaggcggtttcgccatgttccccggtgcattagtccagctcacagccccggccggctggtccggccgcttctgggccagaaccggctgcaacttcgacgaagccggtaacggaaactgcctcaccggagactgcggcttgctaaaatgcaccggcggcggcgcacctcccgtcaccttggctgagttcaccatcgggtcgagcgcaaccgacaaggacttctatgacgtcagcctcgtcgacggttacaacgtcggcatggggctgagggccaccggaggagacggcgactgccagtacgcggggtgcgtgacggacttgaacgccaactgcccgcccgagttgcgggtcacggattcgggttcgggtgttgtggtggcttgtaagagcgcgtgcgaggcgttcaacgcgccggagttttgctgcaccggcgaccacgccaccccgcagacttgctccccgactcagtactccgccatgttcaagagtgcgtgtcccgcggcgtatagctacgcttatgatgatgcttcaagcacctgtacctgtaccgggtcggattacttgatcacattttgccccaccgggtcatcgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009607 GO:0009615 GO:0009627 GO:0009628 GO:0009814 GO:0009889 GO:0009962 GO:0010035 GO:0010038 GO:0010224 GO:0019222 GO:0030312 GO:0031537 GO:0031540 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046686 GO:0048046 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0071944 GO:0080090 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thaumatin

Protein Analysis

251

Amino Acids

25.78

Weight (kDa)

4.27

Isoelectric Point (pI)

37.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thaumatin	PF00314	34 - 247	1.1e-79	Thaumatin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015074)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19320 AT1G75030 AT1G75040 AT1G75050
fragaria_vesca	FvH4_2g40300
malus_domestica	MD08G1036400.v1.1
prunus_persica	Prupe.1G383700_v2.0.a1
pyrus_communis	pycom08g02910
rosa_chinensis	RchiOBHm_Chr6g0300441
rosa_laevigata	RLG00000011337
rosa_multiflora	Rmu_co8384655.1_g000001 Rmu_sc0001670.1_g000005
rosa_roxburghii	Rroxscaffold_7G00167780
rosa_rugosa	Rorug06G0296100
rosa_samantha	Rh6DG409100
rosa_wichuraiana	Rw6G035760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	393
AccB1I	GGYRCC	1 cut(s)	146
AccI	GTMKAC	1 cut(s)	402
AccII	CGCG	4 cut(s)	464, 554, 572, 662
AccIII	TCCGGA	1 cut(s)	137
AcoI	YGGCCR	2 cut(s)	213, 226
AcyI	GRCGYC	2 cut(s)	147, 390
AfaI	GTAC	4 cut(s)	461, 632, 703, 709
AfiI	CCNNNNNNNGG	4 cut(s)	235, 463, 507, 711
AgsI	TTSAA	4 cut(s)	484, 568, 646, 693
AluBI	AGCT	3 cut(s)	59, 202, 672
AluI	AGCT	3 cut(s)	59, 202, 672
Alw26I	GTCTC	2 cut(s)	285, 438
Ama87I	CYCGRG	1 cut(s)	500
Aor13HI	TCCGGA	1 cut(s)	137
AoxI	GGCC	5 cut(s)	122, 213, 226, 237, 432
ApeKI	GCWGC	3 cut(s)	94, 249, 585
AspLEI	GCGC	5 cut(s)	149, 326, 368, 554, 574
AspS9I	GGNCC	4 cut(s)	123, 222, 237, 432
AsuC2I	CCSGG	5 cut(s)	126, 186, 212, 712, 745
AsuHPI	GGTGA	3 cut(s)	277, 328, 343
AvaI	CYCGRG	1 cut(s)	500
AvaII	GGWCC	1 cut(s)	222
BanI	GGYRCC	1 cut(s)	146
BbvCI	CCTCAGC	1 cut(s)	428
BbvI	GCAGC	3 cut(s)	81, 236, 572
BccI	CCATC	1 cut(s)	362
BceAI	ACGGC	2 cut(s)	160, 463
BclI	TGATCA	2 cut(s)	39, 726
BcnI	CCSGG	5 cut(s)	126, 186, 212, 712, 745
BcoDI	GTCTC	2 cut(s)	285, 438
BfaI	CTAG	1 cut(s)	71
BfmI	CTRYAG	1 cut(s)	60
BfoI	RGCGCY	1 cut(s)	150
BisI	GCNGC	9 cut(s)	95, 150, 229, 250, 298, 319, 322, 586, 663
BlsI	GCNGC	9 cut(s)	96, 151, 230, 251, 299, 320, 323, 587, 664
BmcAI	AGTACT	1 cut(s)	632
Bme1390I	CCNGG	5 cut(s)	126, 186, 212, 712, 745
Bme18I	GGWCC	1 cut(s)	222
BmeT110I	CYCGRG	1 cut(s)	500
BmgT120I	GGNCC	4 cut(s)	123, 222, 237, 432
BmiI	GGNNCC	1 cut(s)	148
BmrFI	CCNGG	5 cut(s)	126, 186, 212, 712, 745
BmsI	GCATC	3 cut(s)	59, 95, 676
Bpu10I	CCTNAGC	1 cut(s)	428
BpuMI	CCSGG	5 cut(s)	126, 186, 212, 712, 745
BsaHI	GRCGYC	2 cut(s)	147, 390
BsaJI	CCNNGG	4 cut(s)	184, 210, 339, 660
BsaWI	WCCGGW	3 cut(s)	137, 287, 437
Bsc4I	CCNNNNNNNGG	4 cut(s)	235, 463, 507, 711
Bse118I	RCCGGY	5 cut(s)	215, 245, 266, 314, 590
Bse1I	ACTGG	1 cut(s)	457
BseAI	TCCGGA	1 cut(s)	137
BseDI	CCNNGG	4 cut(s)	184, 210, 339, 660
BseLI	CCNNNNNNNGG	4 cut(s)	235, 463, 507, 711
BseMII	CTCAG	3 cut(s)	336, 419, 641
BseNI	ACTGG	1 cut(s)	457
BseRI	GAGGAG	1 cut(s)	456
BseX3I	CGGCCG	2 cut(s)	213, 226
BseXI	GCAGC	3 cut(s)	81, 236, 572
BsgI	GTGCAG	1 cut(s)	571
Bsh1236I	CGCG	4 cut(s)	464, 554, 572, 662
Bsh1285I	CGRYCG	2 cut(s)	216, 229
BshFI	GGCC	5 cut(s)	124, 215, 228, 239, 434
BshNI	GGYRCC	1 cut(s)	146
BsiEI	CGRYCG	2 cut(s)	216, 229
BsiHKCI	CYCGRG	1 cut(s)	500
BslFI	GGGAC	1 cut(s)	642
BslI	CCNNNNNNNGG	4 cut(s)	235, 463, 507, 711
BsmAI	GTCTC	2 cut(s)	285, 438
BsmBI	CGTCTC	1 cut(s)	438
BsmFI	GGGAC	1 cut(s)	642
BsnI	GGCC	5 cut(s)	124, 215, 228, 239, 434
BsoBI	CYCGRG	1 cut(s)	500
Bsp13I	TCCGGA	1 cut(s)	137
Bsp143I	GATC	2 cut(s)	39, 726
BspANI	GGCC	5 cut(s)	124, 215, 228, 239, 434
BspCNI	CTCAG	3 cut(s)	337, 420, 640
BspEI	TCCGGA	1 cut(s)	137
BspFNI	CGCG	4 cut(s)	464, 554, 572, 662
BspLI	GGNNCC	1 cut(s)	148
BspT107I	GGYRCC	1 cut(s)	146
BsrFI	RCCGGY	5 cut(s)	215, 245, 266, 314, 590
BsrI	ACTGG	1 cut(s)	457
BssAI	RCCGGY	5 cut(s)	215, 245, 266, 314, 590
BssECI	CCNNGG	4 cut(s)	184, 210, 339, 660
BssMI	GATC	2 cut(s)	39, 726
BssNI	GRCGYC	2 cut(s)	147, 390
BssT1I	CCWWGG	1 cut(s)	339
Bst4CI	ACNGT	3 cut(s)	85, 118, 407
BstACI	GRCGYC	2 cut(s)	147, 390
BstC8I	GCNNGC	4 cut(s)	217, 302, 497, 556
BstDEI	CTNAG	3 cut(s)	345, 428, 627
BstDSI	CCRYGG	1 cut(s)	660
BstFNI	CGCG	4 cut(s)	464, 554, 572, 662
BstH2I	RGCGCY	1 cut(s)	150
BstHHI	GCGC	5 cut(s)	149, 326, 368, 554, 574
BstKTI	GATC	2 cut(s)	42, 729
BstMAI	GTCTC	2 cut(s)	285, 438
BstMBI	GATC	2 cut(s)	39, 726
BstMCI	CGRYCG	2 cut(s)	216, 229
BstMWI	GCNNNNNNNGC	8 cut(s)	56, 225, 318, 505, 560, 569, 591, 659
BstSCI	CCNGG	5 cut(s)	124, 184, 210, 710, 743
BstSFI	CTRYAG	1 cut(s)	60
BstUI	CGCG	4 cut(s)	464, 554, 572, 662
BstV1I	GCAGC	3 cut(s)	81, 236, 572
BstZI	CGGCCG	2 cut(s)	213, 226
BsuRI	GGCC	5 cut(s)	124, 215, 228, 239, 434
BtgI	CCRYGG	1 cut(s)	660
Cac8I	GCNNGC	4 cut(s)	217, 302, 497, 556
CfoI	GCGC	5 cut(s)	149, 326, 368, 554, 574
Cfr10I	RCCGGY	5 cut(s)	215, 245, 266, 314, 590
Cfr13I	GGNCC	4 cut(s)	123, 222, 237, 432
Cfr42I	CCGCGG	1 cut(s)	663
Csp6I	GTAC	4 cut(s)	460, 631, 702, 708
CviAII	CATG	3 cut(s)	178, 421, 640
CviQI	GTAC	4 cut(s)	460, 631, 702, 708
DdeI	CTNAG	3 cut(s)	345, 428, 627
DinI	GGCGCC	1 cut(s)	148
DpnI	GATC	2 cut(s)	41, 728
DpnII	GATC	2 cut(s)	39, 726
EaeI	YGGCCR	2 cut(s)	213, 226
EagI	CGGCCG	2 cut(s)	213, 226
EciI	GGCGGA	1 cut(s)	625
EclXI	CGGCCG	2 cut(s)	213, 226
Eco130I	CCWWGG	1 cut(s)	339
Eco47I	GGWCC	1 cut(s)	222
Eco52I	CGGCCG	2 cut(s)	213, 226
Eco88I	CYCGRG	1 cut(s)	500
EcoT14I	CCWWGG	1 cut(s)	339
EgeI	GGCGCC	1 cut(s)	148
EheI	GGCGCC	1 cut(s)	148
ErhI	CCWWGG	1 cut(s)	339
Esp3I	CGTCTC	1 cut(s)	438
FaeI	CATG	3 cut(s)	181, 424, 643
FaiI	YATR	6 cut(s)	179, 387, 422, 641, 669, 681
FaqI	GGGAC	1 cut(s)	642
FatI	CATG	3 cut(s)	177, 420, 639
FauI	CCCGC	5 cut(s)	457, 501, 504, 615, 667
FbaI	TGATCA	2 cut(s)	39, 726
FblI	GTMKAC	1 cut(s)	402
Fnu4HI	GCNGC	9 cut(s)	95, 150, 229, 250, 298, 319, 322, 586, 663
Fsp4HI	GCNGC	9 cut(s)	95, 150, 229, 250, 298, 319, 322, 586, 663
FspBI	CTAG	1 cut(s)	71
GlaI	GCGC	5 cut(s)	148, 325, 367, 553, 573
GluI	GCNGC	9 cut(s)	95, 150, 229, 250, 298, 319, 322, 586, 663
HaeII	RGCGCY	1 cut(s)	150
HaeIII	GGCC	5 cut(s)	124, 215, 228, 239, 434
HhaI	GCGC	5 cut(s)	149, 326, 368, 554, 574
Hin1I	GRCGYC	2 cut(s)	147, 390
Hin1II	CATG	3 cut(s)	181, 424, 643
Hin6I	GCGC	5 cut(s)	147, 324, 366, 552, 572
HinP1I	GCGC	5 cut(s)	147, 324, 366, 552, 572
HincII	GTYRAC	1 cut(s)	403
HindII	GTYRAC	1 cut(s)	403
HinfI	GANTC	2 cut(s)	518, 625
HphI	GGTGA	3 cut(s)	277, 328, 343
Hpy166II	GTNNAC	2 cut(s)	351, 403
Hpy188I	TCNGA	1 cut(s)	718
Hpy188III	TCNNGA	3 cut(s)	138, 646, 753
Hpy8I	GTNNAC	2 cut(s)	351, 403
Hpy99I	CGWCG	4 cut(s)	263, 404, 407, 419
HpyAV	CCTTC	1 cut(s)	158
HpyCH4III	ACNGT	3 cut(s)	85, 118, 407
HpyCH4IV	ACGT	2 cut(s)	390, 414
HpyCH4V	TGCA	6 cut(s)	50, 97, 191, 252, 312, 588
HpyF10VI	GCNNNNNNNGC	8 cut(s)	56, 225, 318, 505, 560, 569, 591, 659
HpyF3I	CTNAG	3 cut(s)	345, 428, 627
HpySE526I	ACGT	2 cut(s)	390, 414
Hsp92I	GRCGYC	2 cut(s)	147, 390
Hsp92II	CATG	3 cut(s)	181, 424, 643
HspAI	GCGC	5 cut(s)	147, 324, 366, 552, 572
KasI	GGCGCC	1 cut(s)	146
Kpn2I	TCCGGA	1 cut(s)	137
KroI	GCCGGC	1 cut(s)	215
KroNI	GCCGGC	1 cut(s)	217
Ksp22I	TGATCA	2 cut(s)	39, 726
KspI	CCGCGG	1 cut(s)	663
Kzo9I	GATC	2 cut(s)	39, 726
LmnI	GCTCC	1 cut(s)	623
Lsp1109I	GCAGC	3 cut(s)	81, 236, 572
LweI	GCATC	3 cut(s)	59, 95, 676
MaeI	CTAG	1 cut(s)	71
MaeII	ACGT	2 cut(s)	390, 414
MaeIII	GTNAC	5 cut(s)	269, 334, 407, 472, 511
MalI	GATC	2 cut(s)	41, 728
MboI	GATC	2 cut(s)	39, 726
MboII	GAAGA	2 cut(s)	20, 23
Mly113I	GGCGCC	1 cut(s)	147
MlyI	GAGTC	1 cut(s)	619
MmeI	TCCRAC	1 cut(s)	696
MnlI	CCTC	7 cut(s)	16, 293, 339, 407, 423, 434, 553
MroI	TCCGGA	1 cut(s)	137
MroNI	GCCGGC	1 cut(s)	215
MspA1I	CMGCKG	1 cut(s)	662
MspR9I	CCNGG	5 cut(s)	126, 186, 212, 712, 745
MvnI	CGCG	4 cut(s)	464, 554, 572, 662
MwoI	GCNNNNNNNGC	8 cut(s)	56, 225, 318, 505, 560, 569, 591, 659
NaeI	GCCGGC	1 cut(s)	217
NarI	GGCGCC	1 cut(s)	147
NciI	CCSGG	5 cut(s)	126, 186, 212, 712, 745
NdeII	GATC	2 cut(s)	39, 726
NgoMIV	GCCGGC	1 cut(s)	215
NlaIII	CATG	3 cut(s)	181, 424, 643
NlaIV	GGNNCC	1 cut(s)	148
NmeAIII	GCCGAG	1 cut(s)	138
NmuCI	GTSAC	3 cut(s)	334, 472, 511
PcsI	WCGNNNNNNNCGW	3 cut(s)	396, 411, 468
PdiI	GCCGGC	1 cut(s)	217
PfeI	GAWTC	1 cut(s)	518
PkrI	GCNGC	9 cut(s)	96, 151, 230, 251, 299, 320, 323, 587, 664
PleI	GAGTC	1 cut(s)	619
PluTI	GGCGCC	1 cut(s)	150
PpsI	GAGTC	1 cut(s)	619
PspN4I	GGNNCC	1 cut(s)	148
PspPI	GGNCC	4 cut(s)	123, 222, 237, 432
RsaI	GTAC	4 cut(s)	461, 632, 703, 709
RsaNI	GTAC	4 cut(s)	460, 631, 702, 708
SacII	CCGCGG	1 cut(s)	663
SalI	GTCGAC	1 cut(s)	401
SatI	GCNGC	9 cut(s)	95, 150, 229, 250, 298, 319, 322, 586, 663
Sau3AI	GATC	2 cut(s)	39, 726
Sau96I	GGNCC	4 cut(s)	123, 222, 237, 432
ScaI	AGTACT	1 cut(s)	632
SchI	GAGTC	1 cut(s)	619
ScrFI	CCNGG	5 cut(s)	126, 186, 212, 712, 745
SfaNI	GCATC	3 cut(s)	59, 95, 676
SfcI	CTRYAG	1 cut(s)	60
SfoI	GGCGCC	1 cut(s)	148
Sfr303I	CCGCGG	1 cut(s)	663
SgrAI	CRCCGGYG	2 cut(s)	314, 590
SgrBI	CCGCGG	1 cut(s)	663
SgrDI	CGTCGACG	1 cut(s)	401
SinI	GGWCC	1 cut(s)	222
SspDI	GGCGCC	1 cut(s)	146
SspMI	CTAG	1 cut(s)	71
StyD4I	CCNGG	5 cut(s)	124, 184, 210, 710, 743
StyI	CCWWGG	1 cut(s)	339
TaaI	ACNGT	3 cut(s)	85, 118, 407
TaiI	ACGT	2 cut(s)	393, 417
TaqI	TCGA	3 cut(s)	258, 362, 402
TatI	WGTACW	1 cut(s)	630
TauI	GCSGC	6 cut(s)	152, 231, 300, 321, 324, 665
TfiI	GAWTC	1 cut(s)	518
TseFI	GTSAC	3 cut(s)	334, 472, 511
TseI	GCWGC	3 cut(s)	94, 249, 585
Tsp45I	GTSAC	3 cut(s)	334, 472, 511
TspGWI	ACGGA	3 cut(s)	288, 491, 530
VpaK11BI	GGWCC	1 cut(s)	222
XmiI	GTMKAC	1 cut(s)	402
XspI	CTAG	1 cut(s)	71
ZraI	GACGTC	1 cut(s)	391
ZrmI	AGTACT	1 cut(s)	632

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.