Rmu_sc0001761.1_g000015

Carbon catabolite repressor protein 4 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001761.1
OG0003003
Physical Location & Seq
Forward (+)
68991 .. 70340
1350 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 666 bp
atgactgatattcatacatataggaggccatgtacccgaagtagaagcttggtgattgggaatatacatgtcctattcaaccctagccgtggagatatcaagctagggcaggttcgactgtttcttgaaaaagcttacaagctgtcattagagtggggatctatccctgttataattgctggggatctaaatagcactccacagagtcctatttaccagtttctagcttcatctcagttagacatccaacgacatgaccgcagacgtgtctcaggacagattgaatttgaatcgcagtacagaaccttcacgtataacaggtttggaaagccattcttttatagatggagtgcggaagaagtaaggcttgcaacgggctgtgaagaagtcactcatctccaacaccatctaaagcttggcagtgcatatcttggagtacctggtagtcgcagaacaagagataggtgtggagaacccttggcaacatcataccactccaagtttttgggaactgttgattatatatggcatacggaggagcttgttccggtcagagttcttgaaacgttacccatcgacactttaaaaggaatgggaggactccccagcaaggtaccacctgtcgccaattcttttgtgcatcatcagtcacatagactggagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exo_endo_phos

Protein Analysis

221

Amino Acids

25.33

Weight (kDa)

9.45

Isoelectric Point (pI)

56.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos PF03372 39 - 187 1.5e-08 Endonuclease/Exonuclease/phosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 173
Acc36I ACCTGC 1 cut(s) 100
Acc65I GGTACC 1 cut(s) 613
AccB1I GGYRCC 1 cut(s) 613
AciI CCGC 2 cut(s) 259, 353
AclI AACGTT 1 cut(s) 566
AclWI GGATC 2 cut(s) 166, 192
AcsI RAATTY 1 cut(s) 284
AfaI GTAC 4 cut(s) 34, 299, 438, 615
AfiI CCNNNNNNNGG 2 cut(s) 89, 610
AflIII ACRYGT 2 cut(s) 67, 265
AgsI TTSAA 5 cut(s) 79, 128, 284, 290, 563
AjiI CACGTC 1 cut(s) 266
AjnI CCWGG 1 cut(s) 439
AluBI AGCT 7 cut(s) 48, 103, 134, 142, 227, 415, 541
AluI AGCT 7 cut(s) 48, 103, 134, 142, 227, 415, 541
Alw26I GTCTC 1 cut(s) 274
AlwI GGATC 2 cut(s) 166, 192
AoxI GGCC 1 cut(s) 26
ApoI RAATTY 1 cut(s) 284
Asp718I GGTACC 1 cut(s) 613
AsuHPI GGTGA 1 cut(s) 64
BanI GGYRCC 1 cut(s) 613
BarI GAAGNNNNNNTAC 2 cut(s) 290, 322
BccI CCATC 3 cut(s) 339, 414, 581
BceAI ACGGC 1 cut(s) 72
BciT130I CCWGG 1 cut(s) 441
BcoDI GTCTC 1 cut(s) 274
BfaI CTAG 3 cut(s) 84, 104, 224
BfuAI ACCTGC 1 cut(s) 100
Bme1390I CCNGG 1 cut(s) 441
BmgBI CACGTC 1 cut(s) 266
BmiI GGNNCC 1 cut(s) 615
BmrFI CCNGG 1 cut(s) 441
BmsI GCATC 1 cut(s) 649
BsaAI YACGTR 1 cut(s) 312
BsaJI CCNNGG 2 cut(s) 88, 477
BsaWI WCCGGW 1 cut(s) 547
BsaXI ACNNNNNCTCC 2 cut(s) 16, 46
Bsc4I CCNNNNNNNGG 2 cut(s) 89, 610
Bse1I ACTGG 2 cut(s) 217, 663
BseBI CCWGG 1 cut(s) 441
BseDI CCNNGG 2 cut(s) 88, 477
BseGI GGATG 1 cut(s) 243
BseLI CCNNNNNNNGG 2 cut(s) 89, 610
BseMII CTCAG 2 cut(s) 248, 285
BseNI ACTGG 2 cut(s) 217, 663
BseRI GAGGAG 1 cut(s) 551
BseYI CCCAGC 2 cut(s) 179, 605
BshFI GGCC 1 cut(s) 28
BshNI GGYRCC 1 cut(s) 613
BsiSI CCGG 1 cut(s) 548
BslI CCNNNNNNNGG 2 cut(s) 89, 610
BsmAI GTCTC 1 cut(s) 274
BsnI GGCC 1 cut(s) 28
Bsp143I GATC 2 cut(s) 158, 184
BspACI CCGC 2 cut(s) 259, 353
BspANI GGCC 1 cut(s) 28
BspCNI CTCAG 2 cut(s) 247, 284
BspLI GGNNCC 1 cut(s) 615
BspMI ACCTGC 1 cut(s) 100
BspPI GGATC 2 cut(s) 166, 192
BspT107I GGYRCC 1 cut(s) 613
BsrI ACTGG 2 cut(s) 217, 663
BssECI CCNNGG 2 cut(s) 88, 477
BssMI GATC 2 cut(s) 158, 184
BssT1I CCWWGG 1 cut(s) 477
Bst2UI CCWGG 1 cut(s) 441
Bst4CI ACNGT 2 cut(s) 120, 514
BstBAI YACGTR 1 cut(s) 312
BstC8I GCNNGC 1 cut(s) 369
BstDEI CTNAG 2 cut(s) 234, 271
BstDSI CCRYGG 1 cut(s) 88
BstF5I GGATG 1 cut(s) 243
BstKTI GATC 2 cut(s) 161, 187
BstMAI GTCTC 1 cut(s) 274
BstMBI GATC 2 cut(s) 158, 184
BstNI CCWGG 1 cut(s) 441
BstNSI RCATGY 1 cut(s) 71
BstSCI CCNGG 1 cut(s) 439
BstX2I RGATCY 2 cut(s) 158, 184
BstXI CCANNNNNNTGG 1 cut(s) 505
BstYI RGATCY 2 cut(s) 158, 184
BsuRI GGCC 1 cut(s) 28
BtgI CCRYGG 1 cut(s) 88
BtrI CACGTC 1 cut(s) 266
BtsCI GGATG 1 cut(s) 243
BtsI GCAGTG 1 cut(s) 427
BtsIMutI CAGTG 1 cut(s) 427
BveI ACCTGC 1 cut(s) 100
Cac8I GCNNGC 1 cut(s) 369
CsiI ACCWGGT 1 cut(s) 439
Csp6I GTAC 4 cut(s) 33, 298, 437, 614
CviAII CATG 3 cut(s) 30, 68, 254
CviQI GTAC 4 cut(s) 33, 298, 437, 614
DdeI CTNAG 2 cut(s) 234, 271
DpnI GATC 2 cut(s) 160, 186
DpnII GATC 2 cut(s) 158, 184
DraI TTTAAA 1 cut(s) 585
Eco130I CCWWGG 1 cut(s) 477
Eco32I GATATC 1 cut(s) 97
EcoRII CCWGG 1 cut(s) 439
EcoRV GATATC 1 cut(s) 97
EcoT14I CCWWGG 1 cut(s) 477
ErhI CCWWGG 1 cut(s) 477
FaeI CATG 3 cut(s) 33, 71, 257
FalI AAGNNNNNCTT 4 cut(s) 320, 352, 351, 383
FatI CATG 3 cut(s) 29, 67, 253
FokI GGATG 1 cut(s) 230
FspBI CTAG 3 cut(s) 84, 104, 224
GsaI CCCAGC 2 cut(s) 183, 609
HaeIII GGCC 1 cut(s) 28
HapII CCGG 1 cut(s) 548
Hin1II CATG 3 cut(s) 33, 71, 257
HindIII AAGCTT 3 cut(s) 46, 132, 413
HinfI GANTC 3 cut(s) 205, 290, 600
HpaII CCGG 1 cut(s) 548
HphI GGTGA 1 cut(s) 64
Hpy188I TCNGA 1 cut(s) 554
Hpy188III TCNNGA 3 cut(s) 125, 273, 560
HpyAV CCTTC 1 cut(s) 316
HpyCH4III ACNGT 2 cut(s) 120, 514
HpyCH4IV ACGT 3 cut(s) 265, 311, 566
HpyCH4V TGCA 3 cut(s) 371, 425, 640
HpyF3I CTNAG 2 cut(s) 234, 271
HpySE526I ACGT 3 cut(s) 265, 311, 566
Hsp92II CATG 3 cut(s) 33, 71, 257
KpnI GGTACC 1 cut(s) 617
Kzo9I GATC 2 cut(s) 158, 184
LmnI GCTCC 1 cut(s) 538
LweI GCATC 1 cut(s) 649
MabI ACCWGGT 1 cut(s) 439
MaeI CTAG 3 cut(s) 84, 104, 224
MaeII ACGT 3 cut(s) 265, 311, 566
MaeIII GTNAC 3 cut(s) 388, 567, 648
MalI GATC 2 cut(s) 160, 186
MboI GATC 2 cut(s) 158, 184
MboII GAAGA 2 cut(s) 368, 395
MflI RGATCY 2 cut(s) 158, 184
MluCI AATT 3 cut(s) 174, 284, 628
MlyI GAGTC 2 cut(s) 214, 594
MmeI TCCRAC 2 cut(s) 271, 424
MnlI CCTC 3 cut(s) 18, 529, 590
MseI TTAA 1 cut(s) 584
MslI CAYNNNNRTG 1 cut(s) 151
MspI CCGG 1 cut(s) 548
MspR9I CCNGG 1 cut(s) 441
MvaI CCWGG 1 cut(s) 441
NdeII GATC 2 cut(s) 158, 184
NlaIII CATG 3 cut(s) 33, 71, 257
NlaIV GGNNCC 1 cut(s) 615
NmuCI GTSAC 2 cut(s) 388, 648
NspI RCATGY 1 cut(s) 71
PciI ACATGT 1 cut(s) 67
PfeI GAWTC 1 cut(s) 290
PleI GAGTC 2 cut(s) 213, 594
PpsI GAGTC 2 cut(s) 213, 594
Ppu21I YACGTR 1 cut(s) 312
PscI ACATGT 1 cut(s) 67
PsiI TTATAA 1 cut(s) 173
Psp1406I AACGTT 1 cut(s) 566
Psp6I CCWGG 1 cut(s) 439
PspFI CCCAGC 2 cut(s) 179, 605
PspGI CCWGG 1 cut(s) 439
PspN4I GGNNCC 1 cut(s) 615
PsuI RGATCY 2 cut(s) 158, 184
RsaI GTAC 4 cut(s) 34, 299, 438, 615
RsaNI GTAC 4 cut(s) 33, 298, 437, 614
RseI CAYNNNNRTG 1 cut(s) 151
SaqAI TTAA 1 cut(s) 584
Sau3AI GATC 2 cut(s) 158, 184
SchI GAGTC 2 cut(s) 214, 594
ScrFI CCNGG 1 cut(s) 441
SexAI ACCWGGT 1 cut(s) 439
SfaNI GCATC 1 cut(s) 649
SmiMI CAYNNNNRTG 1 cut(s) 151
Sse9I AATT 3 cut(s) 174, 284, 628
SsiI CCGC 2 cut(s) 259, 353
SspMI CTAG 3 cut(s) 84, 104, 224
StyD4I CCNGG 1 cut(s) 439
StyI CCWWGG 1 cut(s) 477
TaaI ACNGT 2 cut(s) 120, 514
TaiI ACGT 3 cut(s) 268, 314, 569
TaqI TCGA 2 cut(s) 115, 576
TasI AATT 3 cut(s) 174, 284, 628
TatI WGTACW 1 cut(s) 297
TfiI GAWTC 1 cut(s) 290
Tru1I TTAA 1 cut(s) 584
Tru9I TTAA 1 cut(s) 584
TscAI CASTG 1 cut(s) 427
TseFI GTSAC 2 cut(s) 388, 648
Tsp45I GTSAC 2 cut(s) 388, 648
TspDTI ATGAA 1 cut(s) 219
TspGWI ACGGA 1 cut(s) 548
TspRI CASTG 1 cut(s) 427
XapI RAATTY 1 cut(s) 284
XceI RCATGY 1 cut(s) 71
XcmI CCANNNNNNNNNTGG 1 cut(s) 413
XspI CTAG 3 cut(s) 84, 104, 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.