Rmu_sc0001768.1_g000005

Xylosyltransferase 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001768.1
OG0007023
Physical Location & Seq
Forward (+)
23644 .. 25712
2069 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1131 bp
atgttacaatctcgagtagcaacaaaccaaaccgctgcagctttcgctgaggcaaaagtttcacaagctccaccccctcccgcagtaccagctattcctcgttttgcttatctaatttcagggtcaaaaggggatatggaaaagctttggagaacccttaaggccctataccatcctttgaatcactatgttcttcatttagaccttgaggcaccagtagcagaaagattggagcttgcttcacgagtgcaaaacgaaacaatgtttcataatgttgggaatgtatttatgataaaaaaggctaatatggtcacttatagaggaccaacaatggttgctaatactcttcatgcctgtgccattctgctcaggaggagtaaggattgggattggtttatcaacctcagtgcctcagattatccgcttgttactcaagatgatcttcttcacaccttttcaggtctaaatcgagaactgaatttcattgagcatactagccagcttggttggaaggaggaaaaaagagcaatgcctttaattctagaccctggtctctactcagcaaataaacaagatgtctttttcgttacaccccggcgaacattgccaacttcctttaaattgtttactggttcggcatggatggtcctgtcacgatggtttgttgagtactgcgtttggggttgggacaatctaccaaggacccttctcatgtattacacaaactttgtctcctcgcctgaaggctactttcatactgttatatgcaatgtgccagagtttgctaaaactgcagtcaaccatgatttgcactatatttcttgggatattcctcccaaacagcatcctcacacccttaacataaatgacacaagcaagatgattggaagtggtgctgcctttgcccggaaattcaaacacaatgaccctgccctagataagattgataaagagttacttcacagaagaaaagatggcttcactcctggtggttggtgtgctggaaaacggaaatgcaccagggttgggaacccaaacaagatcaaaccaggtcaaggggctgaaaggcttcgcgcccttgtggataggctgacattgacagctaagtttggtcaaaaccagtgtaaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Branch

Protein Analysis

376

Amino Acids

42.78

Weight (kDa)

9.48

Isoelectric Point (pI)

41.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Branch PF02485 35 - 294 1.5e-80 Core-2/I-Branching enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 211
AccII CGCG 1 cut(s) 1074
AciI CCGC 3 cut(s) 33, 81, 422
AcsI RAATTY 2 cut(s) 478, 911
AcuI CTGAAG 1 cut(s) 762
AfaI GTAC 2 cut(s) 87, 671
AfiI CCNNNNNNNGG 3 cut(s) 906, 1026, 1055
AflII CTTAAG 1 cut(s) 158
AgsI TTSAA 2 cut(s) 181, 916
AjnI CCWGG 4 cut(s) 547, 985, 1019, 1048
AluBI AGCT 7 cut(s) 41, 68, 92, 145, 235, 502, 1103
AluI AGCT 7 cut(s) 41, 68, 92, 145, 235, 502, 1103
Alw26I GTCTC 2 cut(s) 557, 736
Ama87I CYCGRG 1 cut(s) 12
AoxI GGCC 1 cut(s) 162
ApeKI GCWGC 3 cut(s) 35, 38, 896
ApoI RAATTY 2 cut(s) 478, 911
Asp700I GAANNNNTTC 1 cut(s) 1068
AspLEI GCGC 1 cut(s) 1076
AspS9I GGNCC 4 cut(s) 163, 323, 646, 702
AsuC2I CCSGG 2 cut(s) 595, 907
AvaI CYCGRG 1 cut(s) 12
AvaII GGWCC 3 cut(s) 323, 646, 702
BanI GGYRCC 1 cut(s) 211
BauI CACGAG 1 cut(s) 243
BbvCI CCTCAGC 1 cut(s) 48
BbvI GCAGC 3 cut(s) 22, 50, 883
BccI CCATC 4 cut(s) 180, 637, 651, 968
BciT130I CCWGG 4 cut(s) 549, 987, 1021, 1050
BcnI CCSGG 2 cut(s) 595, 907
BcoDI GTCTC 2 cut(s) 557, 736
BfaI CTAG 3 cut(s) 495, 542, 935
BfmI CTRYAG 2 cut(s) 36, 792
BfrI CTTAAG 1 cut(s) 158
BisI GCNGC 3 cut(s) 36, 39, 897
BlsI GCNGC 3 cut(s) 37, 40, 898
BmcAI AGTACT 1 cut(s) 671
Bme1390I CCNGG 6 cut(s) 549, 595, 907, 987, 1021, 1050
Bme18I GGWCC 3 cut(s) 323, 646, 702
BmeT110I CYCGRG 1 cut(s) 12
BmgT120I GGNCC 4 cut(s) 163, 323, 646, 702
BmiI GGNNCC 3 cut(s) 213, 704, 1031
BmrFI CCNGG 6 cut(s) 549, 595, 907, 987, 1021, 1050
BmsI GCATC 1 cut(s) 853
BoxI GACNNNNGTC 1 cut(s) 549
Bpu10I CCTNAGC 2 cut(s) 48, 368
BpuEI CTTGAG 2 cut(s) 227, 417
BpuMI CCSGG 2 cut(s) 595, 907
BsaI GGTCTC 1 cut(s) 557
BsaJI CCNNGG 4 cut(s) 547, 593, 698, 1020
BsaXI ACNNNNNCTCC 2 cut(s) 716, 746
Bsc4I CCNNNNNNNGG 3 cut(s) 906, 1026, 1055
Bse1I ACTGG 3 cut(s) 215, 634, 1120
Bse3DI GCAATG 3 cut(s) 534, 602, 775
BseBI CCWGG 4 cut(s) 549, 987, 1021, 1050
BseDI CCNNGG 4 cut(s) 547, 593, 698, 1020
BseGI GGATG 3 cut(s) 172, 648, 844
BseLI CCNNNNNNNGG 3 cut(s) 906, 1026, 1055
BseMI GCAATG 3 cut(s) 534, 602, 775
BseMII CTCAG 5 cut(s) 39, 382, 418, 426, 573
BseNI ACTGG 3 cut(s) 215, 634, 1120
BseRI GAGGAG 2 cut(s) 388, 724
BseXI GCAGC 3 cut(s) 22, 50, 883
Bsh1236I CGCG 1 cut(s) 1074
BshFI GGCC 1 cut(s) 164
BshNI GGYRCC 1 cut(s) 211
BsiHKCI CYCGRG 1 cut(s) 12
BsiSI CCGG 2 cut(s) 595, 907
BslFI GGGAC 1 cut(s) 701
BslI CCNNNNNNNGG 3 cut(s) 906, 1026, 1055
BsmAI GTCTC 2 cut(s) 557, 736
BsmFI GGGAC 1 cut(s) 701
BsnI GGCC 1 cut(s) 164
Bso31I GGTCTC 1 cut(s) 557
BsoBI CYCGRG 1 cut(s) 12
Bsp143I GATC 2 cut(s) 439, 1041
BspACI CCGC 3 cut(s) 33, 81, 422
BspANI GGCC 1 cut(s) 164
BspCNI CTCAG 5 cut(s) 40, 381, 417, 425, 572
BspFNI CGCG 1 cut(s) 1074
BspLI GGNNCC 3 cut(s) 213, 704, 1031
BspMAI CTGCAG 2 cut(s) 40, 796
BspT107I GGYRCC 1 cut(s) 211
BspTI CTTAAG 1 cut(s) 158
BspTNI GGTCTC 1 cut(s) 557
BsrDI GCAATG 3 cut(s) 534, 602, 775
BsrI ACTGG 3 cut(s) 215, 634, 1120
BssECI CCNNGG 4 cut(s) 547, 593, 698, 1020
BssMI GATC 2 cut(s) 439, 1041
BssSI CACGAG 1 cut(s) 243
BssT1I CCWWGG 1 cut(s) 698
Bst2BI CACGAG 1 cut(s) 243
Bst2UI CCWGG 4 cut(s) 549, 987, 1021, 1050
Bst4CI ACNGT 1 cut(s) 760
Bst6I CTCTTC 1 cut(s) 351
BstAFI CTTAAG 1 cut(s) 158
BstC8I GCNNGC 2 cut(s) 237, 500
BstDEI CTNAG 6 cut(s) 48, 368, 404, 412, 559, 1104
BstF5I GGATG 3 cut(s) 172, 648, 844
BstFNI CGCG 1 cut(s) 1074
BstHHI GCGC 1 cut(s) 1076
BstKTI GATC 2 cut(s) 442, 1044
BstMAI GTCTC 2 cut(s) 557, 736
BstMBI GATC 2 cut(s) 439, 1041
BstMWI GCNNNNNNNGC 6 cut(s) 44, 89, 218, 604, 791, 902
BstNI CCWGG 4 cut(s) 549, 987, 1021, 1050
BstPAI GACNNNNGTC 1 cut(s) 549
BstSCI CCNGG 6 cut(s) 547, 593, 905, 985, 1019, 1048
BstSFI CTRYAG 2 cut(s) 36, 792
BstUI CGCG 1 cut(s) 1074
BstV1I GCAGC 3 cut(s) 22, 50, 883
BsuRI GGCC 1 cut(s) 164
BtsCI GGATG 3 cut(s) 172, 648, 844
BtsIMutI CAGTG 2 cut(s) 412, 1127
Cac8I GCNNGC 2 cut(s) 237, 500
CfoI GCGC 1 cut(s) 1076
Cfr13I GGNCC 4 cut(s) 163, 323, 646, 702
CsiI ACCWGGT 1 cut(s) 1048
Csp6I GTAC 2 cut(s) 86, 670
CviAII CATG 4 cut(s) 350, 639, 712, 803
CviQI GTAC 2 cut(s) 86, 670
DdeI CTNAG 6 cut(s) 48, 368, 404, 412, 559, 1104
DpnI GATC 2 cut(s) 441, 1043
DpnII GATC 2 cut(s) 439, 1041
DraI TTTAAA 1 cut(s) 619
Eam1104I CTCTTC 1 cut(s) 351
EarI CTCTTC 1 cut(s) 351
Eco130I CCWWGG 1 cut(s) 698
Eco31I GGTCTC 1 cut(s) 557
Eco47I GGWCC 3 cut(s) 323, 646, 702
Eco57I CTGAAG 1 cut(s) 762
Eco88I CYCGRG 1 cut(s) 12
EcoO109I RGGNCCY 2 cut(s) 163, 702
EcoRII CCWGG 4 cut(s) 547, 985, 1019, 1048
EcoT14I CCWWGG 1 cut(s) 698
ErhI CCWWGG 1 cut(s) 698
FaeI CATG 4 cut(s) 353, 642, 715, 806
FalI AAGNNNNNCTT 4 cut(s) 426, 458, 942, 974
FaqI GGGAC 1 cut(s) 701
FatI CATG 4 cut(s) 349, 638, 711, 802
FauI CCCGC 1 cut(s) 88
Fnu4HI GCNGC 3 cut(s) 36, 39, 897
FokI GGATG 3 cut(s) 159, 655, 831
Fsp4HI GCNGC 3 cut(s) 36, 39, 897
FspBI CTAG 3 cut(s) 495, 542, 935
GlaI GCGC 1 cut(s) 1075
GluI GCNGC 3 cut(s) 36, 39, 897
HaeIII GGCC 1 cut(s) 164
HapII CCGG 2 cut(s) 595, 907
HhaI GCGC 1 cut(s) 1076
Hin1II CATG 4 cut(s) 353, 642, 715, 806
Hin6I GCGC 1 cut(s) 1074
HinP1I GCGC 1 cut(s) 1074
HincII GTYRAC 1 cut(s) 799
HindII GTYRAC 1 cut(s) 799
HindIII AAGCTT 1 cut(s) 143
HinfI GANTC 1 cut(s) 181
HpaII CCGG 2 cut(s) 595, 907
Hpy166II GTNNAC 2 cut(s) 627, 799
Hpy188I TCNGA 1 cut(s) 415
Hpy188III TCNNGA 7 cut(s) 12, 243, 370, 434, 470, 542, 654
Hpy8I GTNNAC 2 cut(s) 627, 799
HpyAV CCTTC 3 cut(s) 505, 716, 737
HpyCH4III ACNGT 1 cut(s) 760
HpyCH4V TGCA 6 cut(s) 38, 250, 768, 794, 811, 1017
HpyF10VI GCNNNNNNNGC 6 cut(s) 44, 89, 218, 604, 791, 902
HpyF3I CTNAG 6 cut(s) 48, 368, 404, 412, 559, 1104
Hsp92II CATG 4 cut(s) 353, 642, 715, 806
HspAI GCGC 1 cut(s) 1074
Kzo9I GATC 2 cut(s) 439, 1041
LmnI GCTCC 2 cut(s) 73, 232
Lsp1109I GCAGC 3 cut(s) 22, 50, 883
LweI GCATC 1 cut(s) 853
MabI ACCWGGT 1 cut(s) 1048
MaeI CTAG 3 cut(s) 495, 542, 935
MaeIII GTNAC 6 cut(s) 3, 310, 427, 586, 651, 954
MalI GATC 2 cut(s) 441, 1043
MboI GATC 2 cut(s) 439, 1041
MboII GAAGA 5 cut(s) 185, 338, 434, 437, 978
MluCI AATT 5 cut(s) 114, 478, 537, 620, 911
MmeI TCCRAC 1 cut(s) 488
MroXI GAANNNNTTC 1 cut(s) 1068
MseI TTAA 4 cut(s) 159, 536, 618, 858
MslI CAYNNNNRTG 1 cut(s) 354
MspA1I CMGCKG 1 cut(s) 35
MspCI CTTAAG 1 cut(s) 158
MspI CCGG 2 cut(s) 595, 907
MspR9I CCNGG 6 cut(s) 549, 595, 907, 987, 1021, 1050
MvaI CCWGG 4 cut(s) 549, 987, 1021, 1050
MvnI CGCG 1 cut(s) 1074
MwoI GCNNNNNNNGC 6 cut(s) 44, 89, 218, 604, 791, 902
NciI CCSGG 2 cut(s) 595, 907
NdeII GATC 2 cut(s) 439, 1041
NlaIII CATG 4 cut(s) 353, 642, 715, 806
NlaIV GGNNCC 3 cut(s) 213, 704, 1031
NmuCI GTSAC 2 cut(s) 310, 651
PaeR7I CTCGAG 1 cut(s) 12
PdmI GAANNNNTTC 1 cut(s) 1068
PfeI GAWTC 1 cut(s) 181
PkrI GCNGC 3 cut(s) 37, 40, 898
PpuMI RGGWCCY 1 cut(s) 702
PshAI GACNNNNGTC 1 cut(s) 549
Psp5II RGGWCCY 1 cut(s) 702
Psp6I CCWGG 4 cut(s) 547, 985, 1019, 1048
PspGI CCWGG 4 cut(s) 547, 985, 1019, 1048
PspN4I GGNNCC 3 cut(s) 213, 704, 1031
PspPI GGNCC 4 cut(s) 163, 323, 646, 702
PspPPI RGGWCCY 1 cut(s) 702
PstI CTGCAG 2 cut(s) 40, 796
RsaI GTAC 2 cut(s) 87, 671
RsaNI GTAC 2 cut(s) 86, 670
RseI CAYNNNNRTG 1 cut(s) 354
SaqAI TTAA 4 cut(s) 159, 536, 618, 858
SatI GCNGC 3 cut(s) 36, 39, 897
Sau3AI GATC 2 cut(s) 439, 1041
Sau96I GGNCC 4 cut(s) 163, 323, 646, 702
ScaI AGTACT 1 cut(s) 671
ScrFI CCNGG 6 cut(s) 549, 595, 907, 987, 1021, 1050
SexAI ACCWGGT 1 cut(s) 1048
SfaNI GCATC 1 cut(s) 853
SfcI CTRYAG 2 cut(s) 36, 792
Sfr274I CTCGAG 1 cut(s) 12
SinI GGWCC 3 cut(s) 323, 646, 702
SlaI CTCGAG 1 cut(s) 12
SmiMI CAYNNNNRTG 1 cut(s) 354
SmlI CTYRAG 4 cut(s) 12, 158, 206, 432
SmoI CTYRAG 4 cut(s) 12, 158, 206, 432
Sse9I AATT 5 cut(s) 114, 478, 537, 620, 911
SsiI CCGC 3 cut(s) 33, 81, 422
SspMI CTAG 3 cut(s) 495, 542, 935
StyD4I CCNGG 6 cut(s) 547, 593, 905, 985, 1019, 1048
StyI CCWWGG 1 cut(s) 698
TaaI ACNGT 1 cut(s) 760
TaqI TCGA 2 cut(s) 13, 469
TasI AATT 5 cut(s) 114, 478, 537, 620, 911
TatI WGTACW 1 cut(s) 669
TfiI GAWTC 1 cut(s) 181
Tru1I TTAA 4 cut(s) 159, 536, 618, 858
Tru9I TTAA 4 cut(s) 159, 536, 618, 858
TscAI CASTG 2 cut(s) 412, 1127
TseFI GTSAC 2 cut(s) 310, 651
TseI GCWGC 3 cut(s) 35, 38, 896
Tsp45I GTSAC 2 cut(s) 310, 651
TspDTI ATGAA 5 cut(s) 185, 257, 338, 472, 743
TspGWI ACGGA 1 cut(s) 1024
TspRI CASTG 2 cut(s) 412, 1127
Vha464I CTTAAG 1 cut(s) 158
VpaK11BI GGWCC 3 cut(s) 323, 646, 702
XapI RAATTY 2 cut(s) 478, 911
XbaI TCTAGA 1 cut(s) 541
XhoI CTCGAG 1 cut(s) 12
XmnI GAANNNNTTC 1 cut(s) 1068
XspI CTAG 3 cut(s) 495, 542, 935
ZrmI AGTACT 1 cut(s) 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.