Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001772.1

Orthogroup ID

OG0010209

Physical Location & Seq

Genomic Coordinates Forward (+)

50358 .. 55064

Gene Structure 4707 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001772.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

atggccgataaccgagaaatcctgccgccgcagtacgacgtcaacgccaaatgggacgcctgtatcgatctcaccgtccgccgcttcgtctactctaccctcggcggagccgtcggcggtcttcttctcttcaggagtcctgtgactcgctgggctgctgtagcctttggtgctggattgggcattggatctgcatacacagattgttctcgtttatttgagggatctcctgcaactgcaaagttggcatctcgtaagattgttgagactcctgctcctcaggatggagaggattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF543

Protein Analysis

98

Amino Acids

10.46

Weight (kDa)

5.3

Isoelectric Point (pI)

60.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010209)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22520 AT1G22520 AT1G72170
fragaria_vesca	FvH4_5g31700 FvH4_5g31700
malus_domestica	MD08G1217900.v1.1 MD15G1405800.v1.1 MD17G1233400.v1.1
prunus_persica	Prupe.1G555400_v2.0.a1 Prupe.1G555400_v2.0.a1
pyrus_communis	pycom15g36260
rosa_chinensis	RchiOBHm_Chr7g0227581
rosa_multiflora	Rmu_sc0001772.1_g000014
rosa_roxburghii	Rroxscaffold_3G00232040
rosa_rugosa	Rorug07G0241700 Rorug07G0241800
rosa_samantha	Rh7AG395300 Rh7BG377000 Rh7CG414000 Rh7DG391100
rosa_wichuraiana	Rw7G032880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	42
AccI	GTMKAC	1 cut(s)	90
AciI	CCGC	6 cut(s)	26, 29, 79, 82, 105, 117
AclWI	GGATC	2 cut(s)	196, 232
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	115
AcyI	GRCGYC	2 cut(s)	39, 57
AfaI	GTAC	1 cut(s)	35
AfiI	CCNNNNNNNGG	1 cut(s)	284
Alw26I	GTCTC	1 cut(s)	260
AlwI	GGATC	2 cut(s)	196, 232
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	155
AsuHPI	GGTGA	1 cut(s)	64
AxyI	CCTNAGG	1 cut(s)	279
BaeI	ACNNNNGTAYC	2 cut(s)	46, 79
BbsI	GAAGAC	1 cut(s)	113
BbvI	GCAGC	1 cut(s)	142
BccI	CCATC	1 cut(s)	278
BceAI	ACGGC	1 cut(s)	95
BcoDI	GTCTC	1 cut(s)	260
BfmI	CTRYAG	1 cut(s)	159
BisI	GCNGC	4 cut(s)	26, 29, 82, 156
BlsI	GCNGC	4 cut(s)	27, 30, 83, 157
BmiI	GGNNCC	1 cut(s)	109
BmsI	GCATC	1 cut(s)	257
BpiI	GAAGAC	1 cut(s)	113
Bsa29I	ATCGAT	1 cut(s)	66
BsaHI	GRCGYC	2 cut(s)	39, 57
BsaJI	CCNNGG	1 cut(s)	100
BsaXI	ACNNNNNCTCC	2 cut(s)	259, 289
Bsc4I	CCNNNNNNNGG	1 cut(s)	284
Bse21I	CCTNAGG	1 cut(s)	279
BseCI	ATCGAT	1 cut(s)	66
BseDI	CCNNGG	1 cut(s)	100
BseGI	GGATG	1 cut(s)	289
BseLI	CCNNNNNNNGG	1 cut(s)	284
BseMII	CTCAG	1 cut(s)	293
BseRI	GAGGAG	1 cut(s)	267
BseXI	GCAGC	1 cut(s)	142
BseYI	CCCAGC	1 cut(s)	150
BshFI	GGCC	1 cut(s)	5
BshVI	ATCGAT	1 cut(s)	66
BslFI	GGGAC	1 cut(s)	68
BslI	CCNNNNNNNGG	1 cut(s)	284
BsmAI	GTCTC	1 cut(s)	260
BsmFI	GGGAC	1 cut(s)	68
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	3 cut(s)	67, 188, 224
BspACI	CCGC	6 cut(s)	26, 29, 79, 82, 105, 117
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	292
BspDI	ATCGAT	1 cut(s)	66
BspLI	GGNNCC	1 cut(s)	109
BspPI	GGATC	2 cut(s)	196, 232
BssECI	CCNNGG	1 cut(s)	100
BssMI	GATC	3 cut(s)	67, 188, 224
BssNI	GRCGYC	2 cut(s)	39, 57
Bst4CI	ACNGT	1 cut(s)	76
Bst6I	CTCTTC	1 cut(s)	134
BstACI	GRCGYC	2 cut(s)	39, 57
BstDEI	CTNAG	1 cut(s)	279
BstF5I	GGATG	1 cut(s)	289
BstKTI	GATC	3 cut(s)	70, 191, 227
BstMAI	GTCTC	1 cut(s)	260
BstMBI	GATC	3 cut(s)	67, 188, 224
BstMWI	GCNNNNNNNGC	3 cut(s)	161, 170, 245
BstSFI	CTRYAG	1 cut(s)	159
BstV1I	GCAGC	1 cut(s)	142
BstV2I	GAAGAC	1 cut(s)	113
BstX2I	RGATCY	2 cut(s)	188, 224
BstYI	RGATCY	2 cut(s)	188, 224
Bsu15I	ATCGAT	1 cut(s)	66
Bsu36I	CCTNAGG	1 cut(s)	279
BsuRI	GGCC	1 cut(s)	5
BsuTUI	ATCGAT	1 cut(s)	66
BtsCI	GGATG	1 cut(s)	289
ClaI	ATCGAT	1 cut(s)	66
CseI	GACGC	1 cut(s)	65
Csp6I	GTAC	1 cut(s)	34
CviJI	RGCY	4 cut(s)	5, 110, 155, 164
CviKI_1	RGCY	4 cut(s)	5, 110, 155, 164
CviQI	GTAC	1 cut(s)	34
DdeI	CTNAG	1 cut(s)	279
DpnI	GATC	3 cut(s)	69, 190, 226
DpnII	GATC	3 cut(s)	67, 188, 224
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	134
EarI	CTCTTC	1 cut(s)	134
EciI	GGCGGA	2 cut(s)	68, 120
Eco57I	CTGAAG	1 cut(s)	115
Eco81I	CCTNAGG	1 cut(s)	279
FaiI	YATR	1 cut(s)	196
FaqI	GGGAC	1 cut(s)	68
FblI	GTMKAC	1 cut(s)	90
Fnu4HI	GCNGC	4 cut(s)	26, 29, 82, 156
Fsp4HI	GCNGC	4 cut(s)	26, 29, 82, 156
GluI	GCNGC	4 cut(s)	26, 29, 82, 156
GsaI	CCCAGC	1 cut(s)	154
HaeIII	GGCC	1 cut(s)	5
HgaI	GACGC	1 cut(s)	65
Hin1I	GRCGYC	2 cut(s)	39, 57
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HinfI	GANTC	3 cut(s)	136, 145, 268
HphI	GGTGA	1 cut(s)	64
Hpy166II	GTNNAC	2 cut(s)	43, 91
Hpy188III	TCNNGA	2 cut(s)	133, 281
Hpy8I	GTNNAC	2 cut(s)	43, 91
Hpy99I	CGWCG	2 cut(s)	41, 116
HpyCH4III	ACNGT	1 cut(s)	76
HpyCH4IV	ACGT	1 cut(s)	39
HpyCH4V	TGCA	3 cut(s)	194, 233, 239
HpyF10VI	GCNNNNNNNGC	3 cut(s)	161, 170, 245
HpyF3I	CTNAG	1 cut(s)	279
HpySE526I	ACGT	1 cut(s)	39
Hsp92I	GRCGYC	2 cut(s)	39, 57
Kzo9I	GATC	3 cut(s)	67, 188, 224
LmnI	GCTCC	2 cut(s)	107, 280
LpnPI	CCDG	9 cut(s)	35, 73, 118, 136, 153, 159, 243, 266, 285
Lsp1109I	GCAGC	1 cut(s)	142
LweI	GCATC	1 cut(s)	257
MaeII	ACGT	1 cut(s)	39
MaeIII	GTNAC	1 cut(s)	142
MalI	GATC	3 cut(s)	69, 190, 226
MboI	GATC	3 cut(s)	67, 188, 224
MboII	GAAGA	3 cut(s)	113, 116, 121
MflI	RGATCY	2 cut(s)	188, 224
MlyI	GAGTC	3 cut(s)	139, 145, 262
MnlI	CCTC	4 cut(s)	110, 214, 283, 288
MwoI	GCNNNNNNNGC	3 cut(s)	161, 170, 245
NdeII	GATC	3 cut(s)	67, 188, 224
NlaIV	GGNNCC	1 cut(s)	109
NmeAIII	GCCGAG	1 cut(s)	81
NmuCI	GTSAC	1 cut(s)	142
PcsI	WCGNNNNNNNCGW	3 cut(s)	63, 72, 108
PkrI	GCNGC	4 cut(s)	27, 30, 83, 157
PleI	GAGTC	3 cut(s)	139, 144, 262
PpsI	GAGTC	3 cut(s)	139, 144, 262
PspFI	CCCAGC	1 cut(s)	150
PspN4I	GGNNCC	1 cut(s)	109
PsuI	RGATCY	2 cut(s)	188, 224
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
SatI	GCNGC	4 cut(s)	26, 29, 82, 156
Sau3AI	GATC	3 cut(s)	67, 188, 224
SchI	GAGTC	3 cut(s)	139, 145, 262
SetI	ASST	1 cut(s)	42
SfaNI	GCATC	1 cut(s)	257
SfcI	CTRYAG	1 cut(s)	159
SsiI	CCGC	6 cut(s)	26, 29, 79, 82, 105, 117
TaaI	ACNGT	1 cut(s)	76
TaiI	ACGT	1 cut(s)	42
TaqI	TCGA	1 cut(s)	66
TauI	GCSGC	3 cut(s)	28, 31, 84
TseFI	GTSAC	1 cut(s)	142
TseI	GCWGC	1 cut(s)	155
Tsp45I	GTSAC	1 cut(s)	142
XmiI	GTMKAC	1 cut(s)	90
ZraI	GACGTC	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.