Rroxscaffold_3G00232040

Domain of unknown function (DUF543)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0010209
Physical Location & Seq
Forward (+)
17614775 .. 17617208
2434 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00232040.1

Sequence Viewer

Length: 360 bp
ATGGCCGATAACCGAGAAATCCTGCCGCCGCAGTACGACGTCAACGCCAAATGGGACGCCTGTATCGATCTCACCGTCCGCCGCTTCGTCTACTCTACCCTCGGCGGAGCCGTCGGCGGTCTTCTTCTCTTCAGGAGTCCTGTGACTCGCTGGGCTGCTGTAGCCTTTGGTGCTGGATTGGGCATTGGATCTGCATACACAGATTGTTCTCGTTTATTTGAGGGATCTCCTGCAACTGCAAAGTTGGCATCTCATAAGATTGTTGAGACTCCTGCTCCTCAGTTTAAGAATCTTCAACAAGAAATGAATGGCAAGTGGAAGGATAAGCACTCGTGTAGAAAAAACTTTGTGATGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF543

Protein Analysis

119

Amino Acids

13.08

Weight (kDa)

9.33

Isoelectric Point (pI)

53.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF543 PF04418 8 - 73 1.4e-21 Domain of unknown function (DUF543)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 42
AccI GTMKAC 1 cut(s) 90
AciI CCGC 6 cut(s) 26, 29, 79, 82, 105, 117
AclWI GGATC 2 cut(s) 196, 232
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 115
AcyI GRCGYC 2 cut(s) 39, 57
AfaI GTAC 1 cut(s) 35
AgsI TTSAA 1 cut(s) 296
Alw26I GTCTC 1 cut(s) 260
AlwI GGATC 2 cut(s) 196, 232
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 155
AsuHPI GGTGA 1 cut(s) 64
BaeI ACNNNNGTAYC 2 cut(s) 46, 79
BauI CACGAG 1 cut(s) 331
BbsI GAAGAC 1 cut(s) 113
BbvI GCAGC 1 cut(s) 142
BccI CCATC 1 cut(s) 346
BceAI ACGGC 1 cut(s) 95
BcoDI GTCTC 1 cut(s) 260
BfmI CTRYAG 1 cut(s) 159
BisI GCNGC 4 cut(s) 26, 29, 82, 156
BlsI GCNGC 4 cut(s) 27, 30, 83, 157
BmiI GGNNCC 1 cut(s) 109
BmsI GCATC 1 cut(s) 257
BpiI GAAGAC 1 cut(s) 113
Bsa29I ATCGAT 1 cut(s) 66
BsaHI GRCGYC 2 cut(s) 39, 57
BsaJI CCNNGG 1 cut(s) 100
BsaXI ACNNNNNCTCC 2 cut(s) 259, 289
BseCI ATCGAT 1 cut(s) 66
BseDI CCNNGG 1 cut(s) 100
BseMII CTCAG 1 cut(s) 293
BseRI GAGGAG 1 cut(s) 267
BseXI GCAGC 1 cut(s) 142
BseYI CCCAGC 1 cut(s) 150
BshFI GGCC 1 cut(s) 5
BshVI ATCGAT 1 cut(s) 66
BslFI GGGAC 1 cut(s) 68
BsmAI GTCTC 1 cut(s) 260
BsmFI GGGAC 1 cut(s) 68
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 3 cut(s) 67, 188, 224
BspACI CCGC 6 cut(s) 26, 29, 79, 82, 105, 117
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 292
BspDI ATCGAT 1 cut(s) 66
BspLI GGNNCC 1 cut(s) 109
BspPI GGATC 2 cut(s) 196, 232
BssECI CCNNGG 1 cut(s) 100
BssMI GATC 3 cut(s) 67, 188, 224
BssNI GRCGYC 2 cut(s) 39, 57
BssSI CACGAG 1 cut(s) 331
Bst2BI CACGAG 1 cut(s) 331
Bst4CI ACNGT 1 cut(s) 76
Bst6I CTCTTC 1 cut(s) 134
BstACI GRCGYC 2 cut(s) 39, 57
BstDEI CTNAG 1 cut(s) 279
BstKTI GATC 3 cut(s) 70, 191, 227
BstMAI GTCTC 1 cut(s) 260
BstMBI GATC 3 cut(s) 67, 188, 224
BstMWI GCNNNNNNNGC 3 cut(s) 161, 170, 245
BstSFI CTRYAG 1 cut(s) 159
BstV1I GCAGC 1 cut(s) 142
BstV2I GAAGAC 1 cut(s) 113
BstX2I RGATCY 2 cut(s) 188, 224
BstYI RGATCY 2 cut(s) 188, 224
Bsu15I ATCGAT 1 cut(s) 66
BsuRI GGCC 1 cut(s) 5
BsuTUI ATCGAT 1 cut(s) 66
ClaI ATCGAT 1 cut(s) 66
CseI GACGC 1 cut(s) 65
Csp6I GTAC 1 cut(s) 34
CviJI RGCY 5 cut(s) 5, 110, 155, 164, 356
CviKI_1 RGCY 5 cut(s) 5, 110, 155, 164, 356
CviQI GTAC 1 cut(s) 34
DdeI CTNAG 1 cut(s) 279
DpnI GATC 3 cut(s) 69, 190, 226
DpnII GATC 3 cut(s) 67, 188, 224
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 134
EarI CTCTTC 1 cut(s) 134
EciI GGCGGA 2 cut(s) 68, 120
Eco57I CTGAAG 1 cut(s) 115
FaiI YATR 2 cut(s) 196, 255
FaqI GGGAC 1 cut(s) 68
FblI GTMKAC 1 cut(s) 90
Fnu4HI GCNGC 4 cut(s) 26, 29, 82, 156
Fsp4HI GCNGC 4 cut(s) 26, 29, 82, 156
GluI GCNGC 4 cut(s) 26, 29, 82, 156
GsaI CCCAGC 1 cut(s) 154
HaeIII GGCC 1 cut(s) 5
HgaI GACGC 1 cut(s) 65
Hin1I GRCGYC 2 cut(s) 39, 57
HincII GTYRAC 1 cut(s) 43
HindII GTYRAC 1 cut(s) 43
HinfI GANTC 4 cut(s) 136, 145, 268, 289
HphI GGTGA 1 cut(s) 64
Hpy166II GTNNAC 2 cut(s) 43, 91
Hpy188III TCNNGA 1 cut(s) 133
Hpy8I GTNNAC 2 cut(s) 43, 91
Hpy99I CGWCG 2 cut(s) 41, 116
HpyAV CCTTC 1 cut(s) 313
HpyCH4III ACNGT 1 cut(s) 76
HpyCH4IV ACGT 1 cut(s) 39
HpyCH4V TGCA 3 cut(s) 194, 233, 239
HpyF10VI GCNNNNNNNGC 3 cut(s) 161, 170, 245
HpyF3I CTNAG 1 cut(s) 279
HpySE526I ACGT 1 cut(s) 39
Hsp92I GRCGYC 2 cut(s) 39, 57
Kzo9I GATC 3 cut(s) 67, 188, 224
LmnI GCTCC 2 cut(s) 107, 280
LpnPI CCDG 8 cut(s) 35, 73, 118, 136, 153, 159, 243, 285
Lsp1109I GCAGC 1 cut(s) 142
LweI GCATC 1 cut(s) 257
MaeII ACGT 1 cut(s) 39
MaeIII GTNAC 1 cut(s) 142
MalI GATC 3 cut(s) 69, 190, 226
MboI GATC 3 cut(s) 67, 188, 224
MboII GAAGA 4 cut(s) 113, 116, 121, 284
MflI RGATCY 2 cut(s) 188, 224
MlyI GAGTC 3 cut(s) 139, 145, 262
MnlI CCTC 3 cut(s) 110, 214, 288
MseI TTAA 2 cut(s) 285, 358
MwoI GCNNNNNNNGC 3 cut(s) 161, 170, 245
NdeII GATC 3 cut(s) 67, 188, 224
NlaIV GGNNCC 1 cut(s) 109
NmeAIII GCCGAG 1 cut(s) 81
NmuCI GTSAC 1 cut(s) 142
PcsI WCGNNNNNNNCGW 3 cut(s) 63, 72, 108
PfeI GAWTC 1 cut(s) 289
PkrI GCNGC 4 cut(s) 27, 30, 83, 157
PleI GAGTC 3 cut(s) 139, 144, 262
PpsI GAGTC 3 cut(s) 139, 144, 262
PspFI CCCAGC 1 cut(s) 150
PspN4I GGNNCC 1 cut(s) 109
PsuI RGATCY 2 cut(s) 188, 224
RsaI GTAC 1 cut(s) 35
RsaNI GTAC 1 cut(s) 34
SaqAI TTAA 2 cut(s) 285, 358
SatI GCNGC 4 cut(s) 26, 29, 82, 156
Sau3AI GATC 3 cut(s) 67, 188, 224
SchI GAGTC 3 cut(s) 139, 145, 262
SetI ASST 1 cut(s) 42
SfaNI GCATC 1 cut(s) 257
SfcI CTRYAG 1 cut(s) 159
SsiI CCGC 6 cut(s) 26, 29, 79, 82, 105, 117
TaaI ACNGT 1 cut(s) 76
TaiI ACGT 1 cut(s) 42
TaqI TCGA 1 cut(s) 66
TauI GCSGC 3 cut(s) 28, 31, 84
TfiI GAWTC 1 cut(s) 289
Tru1I TTAA 2 cut(s) 285, 358
Tru9I TTAA 2 cut(s) 285, 358
TseFI GTSAC 1 cut(s) 142
TseI GCWGC 1 cut(s) 155
Tsp45I GTSAC 1 cut(s) 142
TspDTI ATGAA 1 cut(s) 320
XmiI GTMKAC 1 cut(s) 90
ZraI GACGTC 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.