Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0010209

Physical Location & Seq

Genomic Coordinates Forward (+)

22248384 .. 22249110

Gene Structure 727 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0241800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGCGTCACTCTTCTTCTGGGTGCGCATTGAAAATATCCCCCCTGCCTTGGAGGAACTAGAGACTATCAAAGCGGTAACTTCTGTTGCTGGTATGTATTTGGATCTGGATGAAAAGCTGTTTAACTTGAAAGGGATCATCAGAGTTCGAGTTGCTCATGCAATTGATAAGCCTTTCTTCCTGAAAAAGACTCTGAAGCTTGCACCAGTTACCCCTCAATCAACTGTTCAGGGTGTTTTGCAAAAAGAAAACAAATTGGACCTGCCCAATCCATTTCAAAATGTGGTTAGTGAAAGCCAAGCAGTGGAGGGTTTCTGCTTTCACAGAGATCGAACCATCCCTACTATCCCTCGTACTCTCTTTGGAGTGAAGGAGACAACAAAGCCACAGAAGCTGGTGGTTATTCGAAAGGATGCATTGAAAATCTCGAAGAATGGAAATAATTTAAGAGCCCTGGCAGTCATTGACACTAATATTGAAGCTGTGACTGATGGGAAGGAAGCAAACCCTATGAGCAAGGAAGCCATTCCCATCCTACCTGAGATGAAGGATGCCAGCCAACCACTTGCTGCAACAAGTGTACTCGAACTGGAGCAGGTGGAGATAGTGGCCAGTTACCCCTCCTGCAGGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF543

Protein Analysis

211

Amino Acids

23.45

Weight (kDa)

7.72

Isoelectric Point (pI)

35.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010209)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22520 AT1G22520 AT1G72170
fragaria_vesca	FvH4_5g31700 FvH4_5g31700
malus_domestica	MD08G1217900.v1.1 MD15G1405800.v1.1 MD17G1233400.v1.1
prunus_persica	Prupe.1G555400_v2.0.a1 Prupe.1G555400_v2.0.a1
pyrus_communis	pycom15g36260
rosa_chinensis	RchiOBHm_Chr7g0227581
rosa_multiflora	Rmu_sc0001772.1_g000014
rosa_roxburghii	Rroxscaffold_3G00232040
rosa_rugosa	Rorug07G0241700 Rorug07G0241800
rosa_samantha	Rh7AG395300 Rh7BG377000 Rh7CG414000 Rh7DG391100
rosa_wichuraiana	Rw7G032880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	586
Acc16I	TGCGCA	1 cut(s)	26
Acc36I	ACCTGC	2 cut(s)	270, 586
AccB7I	CCANNNNNTGG	1 cut(s)	304
AciI	CCGC	1 cut(s)	74
AclWI	GGATC	2 cut(s)	111, 143
AcoI	YGGCCR	1 cut(s)	609
AcuI	CTGAAG	1 cut(s)	215
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	2 cut(s)	355, 582
AfiI	CCNNNNNNNGG	3 cut(s)	49, 304, 627
AgsI	TTSAA	5 cut(s)	32, 130, 278, 421, 479
AjnI	CCWGG	1 cut(s)	453
AluBI	AGCT	4 cut(s)	118, 199, 394, 482
AluI	AGCT	4 cut(s)	118, 199, 394, 482
Alw26I	GTCTC	2 cut(s)	56, 368
AlwI	GGATC	2 cut(s)	111, 143
AlwNI	CAGNNNCTG	1 cut(s)	394
AoxI	GGCC	1 cut(s)	609
ApeKI	GCWGC	1 cut(s)	569
Asp700I	GAANNNNTTC	1 cut(s)	525
AspLEI	GCGC	1 cut(s)	27
AspS9I	GGNCC	1 cut(s)	259
AsuII	TTCGAA	1 cut(s)	406
AvaII	GGWCC	1 cut(s)	259
BalI	TGGCCA	1 cut(s)	611
BanII	GRGCYC	1 cut(s)	454
BbvI	GCAGC	1 cut(s)	556
BccI	CCATC	3 cut(s)	344, 485, 539
BciT130I	CCWGG	1 cut(s)	455
BcoDI	GTCTC	2 cut(s)	56, 368
BfaI	CTAG	1 cut(s)	59
BfmI	CTRYAG	1 cut(s)	625
BfuAI	ACCTGC	2 cut(s)	270, 586
BisI	GCNGC	1 cut(s)	570
BlsI	GCNGC	1 cut(s)	571
Bme1390I	CCNGG	1 cut(s)	455
Bme18I	GGWCC	1 cut(s)	259
BmgT120I	GGNCC	1 cut(s)	259
BmrFI	CCNGG	1 cut(s)	455
BmsI	GCATC	2 cut(s)	403, 541
BpmI	CTGGAG	1 cut(s)	611
Bpu14I	TTCGAA	1 cut(s)	406
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	48, 453
Bsc4I	CCNNNNNNNGG	3 cut(s)	49, 304, 627
Bse1I	ACTGG	3 cut(s)	206, 594, 612
BseBI	CCWGG	1 cut(s)	455
BseDI	CCNNGG	2 cut(s)	48, 453
BseGI	GGATG	5 cut(s)	115, 336, 418, 531, 556
BseLI	CCNNNNNNNGG	3 cut(s)	49, 304, 627
BseMII	CTCAG	1 cut(s)	531
BseNI	ACTGG	3 cut(s)	206, 594, 612
BseXI	GCAGC	1 cut(s)	556
BshFI	GGCC	1 cut(s)	611
BslI	CCNNNNNNNGG	3 cut(s)	49, 304, 627
BsmAI	GTCTC	2 cut(s)	56, 368
BsnI	GGCC	1 cut(s)	611
Bsp119I	TTCGAA	1 cut(s)	406
Bsp1286I	GDGCHC	1 cut(s)	454
Bsp143I	GATC	3 cut(s)	103, 135, 328
BspACI	CCGC	1 cut(s)	74
BspANI	GGCC	1 cut(s)	611
BspCNI	CTCAG	1 cut(s)	532
BspMAI	CTGCAG	1 cut(s)	629
BspMI	ACCTGC	2 cut(s)	270, 586
BspPI	GGATC	2 cut(s)	111, 143
BspT104I	TTCGAA	1 cut(s)	406
BsrI	ACTGG	3 cut(s)	206, 594, 612
BssECI	CCNNGG	2 cut(s)	48, 453
BssMI	GATC	3 cut(s)	103, 135, 328
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	48
Bst2UI	CCWGG	1 cut(s)	455
Bst4CI	ACNGT	1 cut(s)	226
Bst6I	CTCTTC	1 cut(s)	17
BstACI	GRCGYC	1 cut(s)	5
BstBI	TTCGAA	1 cut(s)	406
BstC8I	GCNNGC	2 cut(s)	201, 556
BstDEI	CTNAG	1 cut(s)	540
BstENI	CCTNNNNNAGG	1 cut(s)	625
BstF5I	GGATG	5 cut(s)	115, 336, 418, 531, 556
BstHHI	GCGC	1 cut(s)	27
BstKTI	GATC	3 cut(s)	106, 138, 331
BstMAI	GTCTC	2 cut(s)	56, 368
BstMBI	GATC	3 cut(s)	103, 135, 328
BstMWI	GCNNNNNNNGC	1 cut(s)	391
BstNI	CCWGG	1 cut(s)	455
BstSCI	CCNGG	1 cut(s)	453
BstSFI	CTRYAG	1 cut(s)	625
BstV1I	GCAGC	1 cut(s)	556
BstX2I	RGATCY	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	103
BsuRI	GGCC	1 cut(s)	611
BtsCI	GGATG	5 cut(s)	115, 336, 418, 531, 556
BtsI	GCAGTG	1 cut(s)	309
BtsIMutI	CAGTG	1 cut(s)	309
BveI	ACCTGC	2 cut(s)	270, 586
Cac8I	GCNNGC	2 cut(s)	201, 556
CaiI	CAGNNNCTG	1 cut(s)	394
CfoI	GCGC	1 cut(s)	27
Cfr13I	GGNCC	1 cut(s)	259
Csp6I	GTAC	2 cut(s)	354, 581
CviAII	CATG	1 cut(s)	158
CviQI	GTAC	2 cut(s)	354, 581
DdeI	CTNAG	1 cut(s)	540
DpnI	GATC	3 cut(s)	105, 137, 330
DpnII	GATC	3 cut(s)	103, 135, 328
EaeI	YGGCCR	1 cut(s)	609
Eam1104I	CTCTTC	1 cut(s)	17
EarI	CTCTTC	1 cut(s)	17
Eco130I	CCWWGG	1 cut(s)	48
Eco24I	GRGCYC	1 cut(s)	454
Eco47I	GGWCC	1 cut(s)	259
Eco57I	CTGAAG	1 cut(s)	215
EcoNI	CCTNNNNNAGG	1 cut(s)	625
EcoRII	CCWGG	1 cut(s)	453
EcoT14I	CCWWGG	1 cut(s)	48
EcoT22I	ATGCAT	1 cut(s)	418
EcoT38I	GRGCYC	1 cut(s)	454
ErhI	CCWWGG	1 cut(s)	48
FaeI	CATG	1 cut(s)	161
FaiI	YATR	3 cut(s)	95, 159, 512
FalI	AAGNNNNNCTT	2 cut(s)	161, 193
FatI	CATG	1 cut(s)	157
Fnu4HI	GCNGC	1 cut(s)	570
FokI	GGATG	5 cut(s)	122, 323, 425, 518, 563
FriOI	GRGCYC	1 cut(s)	454
Fsp4HI	GCNGC	1 cut(s)	570
FspAI	RTGCGCAY	1 cut(s)	26
FspBI	CTAG	1 cut(s)	59
FspI	TGCGCA	1 cut(s)	26
GlaI	GCGC	1 cut(s)	26
GluI	GCNGC	1 cut(s)	570
GsuI	CTGGAG	1 cut(s)	611
HaeIII	GGCC	1 cut(s)	611
HhaI	GCGC	1 cut(s)	27
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	161
Hin6I	GCGC	1 cut(s)	25
HinP1I	GCGC	1 cut(s)	25
HindIII	AAGCTT	1 cut(s)	197
HinfI	GANTC	1 cut(s)	190
Hpy166II	GTNNAC	1 cut(s)	581
Hpy188I	TCNGA	2 cut(s)	143, 195
Hpy188III	TCNNGA	3 cut(s)	107, 181, 427
Hpy8I	GTNNAC	1 cut(s)	581
HpyAV	CCTTC	3 cut(s)	364, 490, 541
HpyCH4III	ACNGT	1 cut(s)	226
HpyCH4V	TGCA	6 cut(s)	161, 203, 241, 416, 572, 627
HpyF10VI	GCNNNNNNNGC	1 cut(s)	391
HpyF3I	CTNAG	1 cut(s)	540
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	161
HspAI	GCGC	1 cut(s)	25
Kzo9I	GATC	3 cut(s)	103, 135, 328
LmnI	GCTCC	1 cut(s)	592
Lsp1109I	GCAGC	1 cut(s)	556
LweI	GCATC	2 cut(s)	403, 541
MaeI	CTAG	1 cut(s)	59
MaeIII	GTNAC	5 cut(s)	6, 76, 208, 484, 614
MalI	GATC	3 cut(s)	105, 137, 330
MboI	GATC	3 cut(s)	103, 135, 328
MboII	GAAGA	4 cut(s)	4, 7, 169, 442
MfeI	CAATTG	1 cut(s)	162
MflI	RGATCY	1 cut(s)	103
MhlI	GDGCHC	1 cut(s)	454
MlsI	TGGCCA	1 cut(s)	611
MluCI	AATT	3 cut(s)	162, 254, 442
MluNI	TGGCCA	1 cut(s)	611
MlyI	GAGTC	1 cut(s)	184
MnlI	CCTC	5 cut(s)	46, 225, 301, 360, 631
Mox20I	TGGCCA	1 cut(s)	611
Mph1103I	ATGCAT	1 cut(s)	418
MroXI	GAANNNNTTC	1 cut(s)	525
MscI	TGGCCA	1 cut(s)	611
MseI	TTAA	2 cut(s)	123, 446
Msp20I	TGGCCA	1 cut(s)	611
MspR9I	CCNGG	1 cut(s)	455
MunI	CAATTG	1 cut(s)	162
MvaI	CCWGG	1 cut(s)	455
MwoI	GCNNNNNNNGC	1 cut(s)	391
NdeII	GATC	3 cut(s)	103, 135, 328
NlaIII	CATG	1 cut(s)	161
NmuCI	GTSAC	2 cut(s)	6, 484
NsbI	TGCGCA	1 cut(s)	26
NsiI	ATGCAT	1 cut(s)	418
NspV	TTCGAA	1 cut(s)	406
PaqCI	CACCTGC	1 cut(s)	586
PdmI	GAANNNNTTC	1 cut(s)	525
PflMI	CCANNNNNTGG	1 cut(s)	304
PkrI	GCNGC	1 cut(s)	571
PleI	GAGTC	1 cut(s)	184
PpsI	GAGTC	1 cut(s)	184
Psp6I	CCWGG	1 cut(s)	453
PspGI	CCWGG	1 cut(s)	453
PspPI	GGNCC	1 cut(s)	259
PsrI	GAACNNNNNNTAC	2 cut(s)	325, 357
PstI	CTGCAG	1 cut(s)	629
PstNI	CAGNNNCTG	1 cut(s)	394
PsuI	RGATCY	1 cut(s)	103
RsaI	GTAC	2 cut(s)	355, 582
RsaNI	GTAC	2 cut(s)	354, 581
SaqAI	TTAA	2 cut(s)	123, 446
SatI	GCNGC	1 cut(s)	570
Sau3AI	GATC	3 cut(s)	103, 135, 328
Sau96I	GGNCC	1 cut(s)	259
SbfI	CCTGCAGG	1 cut(s)	629
SchI	GAGTC	1 cut(s)	184
ScrFI	CCNGG	1 cut(s)	455
SdaI	CCTGCAGG	1 cut(s)	629
SduI	GDGCHC	1 cut(s)	454
SetI	ASST	7 cut(s)	120, 201, 264, 396, 484, 541, 600
SfaNI	GCATC	2 cut(s)	403, 541
SfcI	CTRYAG	1 cut(s)	625
SfuI	TTCGAA	1 cut(s)	406
SinI	GGWCC	1 cut(s)	259
Sse8387I	CCTGCAGG	1 cut(s)	629
Sse9I	AATT	3 cut(s)	162, 254, 442
SsiI	CCGC	1 cut(s)	74
SspI	AATATT	1 cut(s)	475
SspMI	CTAG	1 cut(s)	59
StyD4I	CCNGG	1 cut(s)	453
StyI	CCWWGG	1 cut(s)	48
TaaI	ACNGT	1 cut(s)	226
TaqI	TCGA	5 cut(s)	148, 331, 406, 428, 585
TasI	AATT	3 cut(s)	162, 254, 442
TatI	WGTACW	1 cut(s)	580
Tru1I	TTAA	2 cut(s)	123, 446
Tru9I	TTAA	2 cut(s)	123, 446
TscAI	CASTG	1 cut(s)	309
TseFI	GTSAC	2 cut(s)	6, 484
TseI	GCWGC	1 cut(s)	569
Tsp45I	GTSAC	2 cut(s)	6, 484
TspDTI	ATGAA	2 cut(s)	126, 560
TspRI	CASTG	1 cut(s)	309
Van91I	CCANNNNNTGG	1 cut(s)	304
VpaK11BI	GGWCC	1 cut(s)	259
XagI	CCTNNNNNAGG	1 cut(s)	625
XmnI	GAANNNNTTC	1 cut(s)	525
XspI	CTAG	1 cut(s)	59
Zsp2I	ATGCAT	1 cut(s)	418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.