Rmu_sc0001803.1_g000025

rho GTPase-activating protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001803.1
OG0011795
Physical Location & Seq
Reverse (-)
85146 .. 88399
3254 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1107 bp
atgcagtcgcagacagaagaggagtgtgctcaacttgttaggctccttccgccaacagaagctgcattattggattgggcagtaaacctaatggccgatgttgcacagatggaacacctgaacaagatgaatgcacgcaacattgccatggtctttgcaccaaacatgactcaaatggtagatcctttgactgcattgatgtatgcagtccaagtgatgaatttcctcaagactcttatagtcaagacactaagagagagagaagagtctatggtggaaacagctcctgtcccacgccttgagccttctgatgaggatgagcaccaaagcacttttcaaccatatctcgaagagactaataaggaggctaacaaggaaaatgaagaggagaatgtatttgttgccgaagaaccggctttacagagctcccctcgcactttacaagatgaacctacagctgaaagtggatcccagaatttcctctcttctatcaaatatatgattcccggaggaaattggtctgtagttgataattgtccttgtgaggttgtatcccaagtcagctctttaacaaatgggctccaagaggatggcataacaggtcagggtagagaggctcagacaaacgtttggaagagtcaaccaagcgtttcaaatttgaagaagggatcaaaggtcactgagcagctaatggttcaaattgtcgggcctggagacaagagcaagagaactgggattcttagccgcataaattcgaggacagatatcgctgaagaaaaagaaaagccaagaagtgtgtccattctttcaaatcaaagtgagcatcgacgatccctagtctccaacttccaggttccagcttgccctcgctttcatcgtcttggcaaattcgttgtttctgagaagcctctcaaaggtctccgagctccaggtatttgggcttataagcacagacaaaggactaacgtccacgtcatggcactgaaccttattagagatgttccactgaccccaaatgagaagcaaaccatgttagaactcctcacactgccaccttcacgaggaaatataccttcgtcttggtggaggaggtggagagaacaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0008150 GO:0009628 GO:0034059 GO:0036293 GO:0050896 GO:0070482
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PBD RhoGAP

Protein Analysis

368

Amino Acids

41.57

Weight (kDa)

5.99

Isoelectric Point (pI)

59.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RhoGAP PF00620 3 - 57 2.9e-09 RhoGAP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011795)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11490
fragaria_vesca FvH4_6g19150
malus_domestica MD12G1027300.v1.1 MD14G1027500.v1.1
prunus_persica Prupe.7G104200_v2.0.a1
pyrus_communis pycom12g02620 pycom14g02620
rosa_chinensis RchiOBHm_Chr3g0474261
rosa_laevigata RLG00000023935
rosa_multiflora Rmu_sc0001803.1_g000025 Rmu_sc0004507.1_g000020 Rmu_sc0029669.1_g000001
rosa_roxburghii Rroxscaffold_6G00407400
rosa_rugosa Rorug03G0139800
rosa_samantha Rh3AG190400 Rh3BG219600 Rh3CG214800 Rh3DG215100
rosa_wichuraiana Rw3G017370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 945
AccB7I CCANNNNNTGG 1 cut(s) 976
AciI CCGC 2 cut(s) 50, 745
AclI AACGTT 1 cut(s) 627
AclWI GGATC 5 cut(s) 176, 462, 475, 676, 825
AcoI YGGCCR 1 cut(s) 93
AcsI RAATTY 5 cut(s) 220, 475, 655, 751, 887
AcuI CTGAAG 1 cut(s) 792
AfiI CCNNNNNNNGG 3 cut(s) 914, 976, 1061
AgsI TTSAA 5 cut(s) 338, 654, 661, 698, 810
AjiI CACGTC 1 cut(s) 973
AjnI CCWGG 3 cut(s) 709, 849, 928
AjuI GAANNNNNNNTTGG 2 cut(s) 318, 350
AluBI AGCT 8 cut(s) 62, 284, 426, 458, 564, 688, 860, 926
AluI AGCT 8 cut(s) 62, 284, 426, 458, 564, 688, 860, 926
Alw21I GWGCWC 4 cut(s) 31, 324, 428, 928
Alw26I GTCTC 4 cut(s) 347, 708, 844, 923
AlwI GGATC 5 cut(s) 176, 462, 475, 676, 825
AlwNI CAGNNNCTG 2 cut(s) 62, 287
AoxI GGCC 2 cut(s) 93, 707
ApeKI GCWGC 2 cut(s) 62, 685
ApoI RAATTY 5 cut(s) 220, 475, 655, 751, 887
AspS9I GGNCC 1 cut(s) 707
AsuC2I CCSGG 1 cut(s) 507
BamHI GGATCC 1 cut(s) 467
BanII GRGCYC 3 cut(s) 428, 582, 928
BauI CACGAG 1 cut(s) 1059
Bbv12I GWGCWC 4 cut(s) 31, 324, 428, 928
BbvI GCAGC 2 cut(s) 49, 697
BccI CCATC 2 cut(s) 103, 584
BciT130I CCWGG 3 cut(s) 711, 851, 930
BciVI GTATCC 1 cut(s) 562
BcnI CCSGG 1 cut(s) 507
BcoDI GTCTC 4 cut(s) 347, 708, 844, 923
BfaI CTAG 1 cut(s) 836
BfmI CTRYAG 2 cut(s) 453, 522
BfuI GTATCC 1 cut(s) 562
BisI GCNGC 3 cut(s) 63, 686, 745
BlsI GCNGC 3 cut(s) 64, 687, 746
Bme1390I CCNGG 4 cut(s) 507, 711, 851, 930
BmgBI CACGTC 1 cut(s) 973
BmgT120I GGNCC 1 cut(s) 707
BmiI GGNNCC 4 cut(s) 44, 469, 581, 855
BmrFI CCNGG 4 cut(s) 507, 711, 851, 930
BmrI ACTGGG 1 cut(s) 741
BmsI GCATC 1 cut(s) 832
BmuI ACTGGG 1 cut(s) 741
BoxI GACNNNNGTC 1 cut(s) 965
BplI GAGNNNNNCTC 2 cut(s) 415, 447
BpmI CTGGAG 2 cut(s) 732, 912
BpuEI CTTGAG 2 cut(s) 212, 320
BpuMI CCSGG 1 cut(s) 507
BsaI GGTCTC 1 cut(s) 923
BsaJI CCNNGG 1 cut(s) 147
Bsc4I CCNNNNNNNGG 3 cut(s) 914, 976, 1061
Bse118I RCCGGY 1 cut(s) 412
Bse1I ACTGG 1 cut(s) 736
Bse3DI GCAATG 1 cut(s) 141
BseBI CCWGG 3 cut(s) 711, 851, 930
BseDI CCNNGG 1 cut(s) 147
BseGI GGATG 2 cut(s) 322, 595
BseLI CCNNNNNNNGG 3 cut(s) 914, 976, 1061
BseMI GCAATG 1 cut(s) 141
BseMII CTCAG 3 cut(s) 632, 672, 891
BseNI ACTGG 1 cut(s) 736
BseRI GAGGAG 4 cut(s) 35, 401, 1031, 1102
BseXI GCAGC 2 cut(s) 49, 697
BshFI GGCC 2 cut(s) 95, 709
BsiHKAI GWGCWC 4 cut(s) 31, 324, 428, 928
BsiSI CCGG 2 cut(s) 413, 507
BslFI GGGAC 1 cut(s) 275
BslI CCNNNNNNNGG 3 cut(s) 914, 976, 1061
BsmAI GTCTC 4 cut(s) 347, 708, 844, 923
BsmFI GGGAC 1 cut(s) 275
BsmI GAATGC 1 cut(s) 136
BsnI GGCC 2 cut(s) 95, 709
Bso31I GGTCTC 1 cut(s) 923
Bsp1286I GDGCHC 5 cut(s) 31, 324, 428, 582, 928
Bsp143I GATC 4 cut(s) 181, 467, 668, 830
Bsp19I CCATGG 1 cut(s) 147
BspACI CCGC 2 cut(s) 50, 745
BspANI GGCC 2 cut(s) 95, 709
BspCNI CTCAG 3 cut(s) 631, 673, 892
BspLI GGNNCC 4 cut(s) 44, 469, 581, 855
BspPI GGATC 5 cut(s) 176, 462, 475, 676, 825
BspTNI GGTCTC 1 cut(s) 923
BsrDI GCAATG 1 cut(s) 141
BsrFI RCCGGY 1 cut(s) 412
BsrI ACTGG 1 cut(s) 736
BssAI RCCGGY 1 cut(s) 412
BssECI CCNNGG 1 cut(s) 147
BssMI GATC 4 cut(s) 181, 467, 668, 830
BssSI CACGAG 1 cut(s) 1059
BssT1I CCWWGG 1 cut(s) 147
Bst2BI CACGAG 1 cut(s) 1059
Bst2UI CCWGG 3 cut(s) 711, 851, 930
Bst6I CTCTTC 6 cut(s) 12, 258, 345, 378, 490, 629
BstC8I GCNNGC 2 cut(s) 136, 862
BstDEI CTNAG 5 cut(s) 251, 618, 681, 740, 900
BstDSI CCRYGG 1 cut(s) 147
BstENI CCTNNNNNAGG 2 cut(s) 912, 1059
BstF5I GGATG 2 cut(s) 322, 595
BstKTI GATC 4 cut(s) 184, 470, 671, 833
BstMAI GTCTC 4 cut(s) 347, 708, 844, 923
BstMBI GATC 4 cut(s) 181, 467, 668, 830
BstMWI GCNNNNNNNGC 3 cut(s) 49, 101, 432
BstNI CCWGG 3 cut(s) 711, 851, 930
BstPAI GACNNNNGTC 1 cut(s) 965
BstSCI CCNGG 4 cut(s) 505, 709, 849, 928
BstSFI CTRYAG 2 cut(s) 453, 522
BstV1I GCAGC 2 cut(s) 49, 697
BstX2I RGATCY 2 cut(s) 181, 467
BstXI CCANNNNNNTGG 2 cut(s) 590, 936
BstYI RGATCY 2 cut(s) 181, 467
BsuI GTATCC 1 cut(s) 562
BsuRI GGCC 2 cut(s) 95, 709
BtgI CCRYGG 1 cut(s) 147
BtrI CACGTC 1 cut(s) 973
BtsCI GGATG 2 cut(s) 322, 595
BtsI GCAGTG 1 cut(s) 1046
BtsIMutI CAGTG 4 cut(s) 678, 980, 1004, 1046
Cac8I GCNNGC 2 cut(s) 136, 862
CaiI CAGNNNCTG 2 cut(s) 62, 287
Cfr10I RCCGGY 1 cut(s) 412
Cfr13I GGNCC 1 cut(s) 707
CviAII CATG 4 cut(s) 148, 166, 976, 1030
DdeI CTNAG 5 cut(s) 251, 618, 681, 740, 900
DpnI GATC 4 cut(s) 183, 469, 670, 832
DpnII GATC 4 cut(s) 181, 467, 668, 830
EaeI YGGCCR 1 cut(s) 93
Eam1104I CTCTTC 6 cut(s) 12, 258, 345, 378, 490, 629
EarI CTCTTC 6 cut(s) 12, 258, 345, 378, 490, 629
EciI GGCGGA 1 cut(s) 39
Ecl136II GAGCTC 2 cut(s) 426, 926
Eco130I CCWWGG 1 cut(s) 147
Eco24I GRGCYC 3 cut(s) 428, 582, 928
Eco31I GGTCTC 1 cut(s) 923
Eco32I GATATC 1 cut(s) 766
Eco53kI GAGCTC 2 cut(s) 426, 926
Eco57I CTGAAG 1 cut(s) 792
EcoICRI GAGCTC 2 cut(s) 426, 926
EcoNI CCTNNNNNAGG 2 cut(s) 912, 1059
EcoRII CCWGG 3 cut(s) 709, 849, 928
EcoRV GATATC 1 cut(s) 766
EcoT14I CCWWGG 1 cut(s) 147
EcoT38I GRGCYC 3 cut(s) 428, 582, 928
ErhI CCWWGG 1 cut(s) 147
FaeI CATG 4 cut(s) 151, 169, 979, 1033
FaqI GGGAC 1 cut(s) 275
FatI CATG 4 cut(s) 147, 165, 975, 1029
Fnu4HI GCNGC 3 cut(s) 63, 686, 745
FokI GGATG 2 cut(s) 329, 602
FriOI GRGCYC 3 cut(s) 428, 582, 928
Fsp4HI GCNGC 3 cut(s) 63, 686, 745
FspBI CTAG 1 cut(s) 836
GluI GCNGC 3 cut(s) 63, 686, 745
GsuI CTGGAG 2 cut(s) 732, 912
HaeIII GGCC 2 cut(s) 95, 709
HapII CCGG 2 cut(s) 413, 507
Hin1II CATG 4 cut(s) 151, 169, 979, 1033
HincII GTYRAC 1 cut(s) 641
HindII GTYRAC 1 cut(s) 641
HinfI GANTC 6 cut(s) 169, 232, 266, 502, 637, 736
HpaII CCGG 2 cut(s) 413, 507
Hpy166II GTNNAC 3 cut(s) 85, 641, 970
Hpy188I TCNGA 4 cut(s) 310, 621, 901, 923
Hpy188III TCNNGA 4 cut(s) 229, 244, 347, 1059
Hpy8I GTNNAC 3 cut(s) 85, 641, 970
Hpy99I CGWCG 1 cut(s) 831
HpyAV CCTTC 5 cut(s) 56, 315, 658, 1065, 1083
HpyCH4IV ACGT 3 cut(s) 627, 966, 972
HpyCH4V TGCA 7 cut(s) 4, 65, 104, 134, 158, 194, 206
HpyF10VI GCNNNNNNNGC 3 cut(s) 49, 101, 432
HpyF3I CTNAG 5 cut(s) 251, 618, 681, 740, 900
HpySE526I ACGT 3 cut(s) 627, 966, 972
Hsp92II CATG 4 cut(s) 151, 169, 979, 1033
Kzo9I GATC 4 cut(s) 181, 467, 668, 830
LmnI GCTCC 5 cut(s) 48, 289, 431, 585, 931
Lsp1109I GCAGC 2 cut(s) 49, 697
LweI GCATC 1 cut(s) 832
MaeI CTAG 1 cut(s) 836
MaeII ACGT 3 cut(s) 627, 966, 972
MaeIII GTNAC 1 cut(s) 676
MalI GATC 4 cut(s) 183, 469, 670, 832
MboI GATC 4 cut(s) 181, 467, 668, 830
MboII GAAGA 9 cut(s) 29, 275, 362, 395, 419, 477, 646, 673, 785
MflI RGATCY 2 cut(s) 181, 467
MhlI GDGCHC 5 cut(s) 31, 324, 428, 582, 928
MluCI AATT 8 cut(s) 220, 475, 514, 532, 655, 699, 751, 887
MlyI GAGTC 4 cut(s) 163, 226, 275, 646
MmeI TCCRAC 1 cut(s) 867
MseI TTAA 1 cut(s) 569
MslI CAYNNNNRTG 1 cut(s) 146
MspA1I CMGCKG 1 cut(s) 458
MspI CCGG 2 cut(s) 413, 507
MspR9I CCNGG 4 cut(s) 507, 711, 851, 930
Mva1269I GAATGC 1 cut(s) 136
MvaI CCWGG 3 cut(s) 711, 851, 930
MwoI GCNNNNNNNGC 3 cut(s) 49, 101, 432
NciI CCSGG 1 cut(s) 507
NcoI CCATGG 1 cut(s) 147
NdeII GATC 4 cut(s) 181, 467, 668, 830
NlaIII CATG 4 cut(s) 151, 169, 979, 1033
NlaIV GGNNCC 4 cut(s) 44, 469, 581, 855
NmuCI GTSAC 1 cut(s) 676
PcsI WCGNNNNNNNCGW 1 cut(s) 874
PctI GAATGC 1 cut(s) 136
PfeI GAWTC 2 cut(s) 502, 736
PflMI CCANNNNNTGG 1 cut(s) 976
PfoI TCCNGGA 1 cut(s) 505
PkrI GCNGC 3 cut(s) 64, 687, 746
PleI GAGTC 4 cut(s) 163, 226, 274, 645
PpsI GAGTC 4 cut(s) 163, 226, 274, 645
PshAI GACNNNNGTC 1 cut(s) 965
PsiI TTATAA 1 cut(s) 945
Psp124BI GAGCTC 2 cut(s) 428, 928
Psp1406I AACGTT 1 cut(s) 627
Psp6I CCWGG 3 cut(s) 709, 849, 928
PspGI CCWGG 3 cut(s) 709, 849, 928
PspN4I GGNNCC 4 cut(s) 44, 469, 581, 855
PspPI GGNCC 1 cut(s) 707
PsrI GAACNNNNNNTAC 2 cut(s) 402, 434
PstNI CAGNNNCTG 2 cut(s) 62, 287
PsuI RGATCY 2 cut(s) 181, 467
PvuII CAGCTG 1 cut(s) 458
RseI CAYNNNNRTG 1 cut(s) 146
SacI GAGCTC 2 cut(s) 428, 928
SaqAI TTAA 1 cut(s) 569
SatI GCNGC 3 cut(s) 63, 686, 745
Sau3AI GATC 4 cut(s) 181, 467, 668, 830
Sau96I GGNCC 1 cut(s) 707
SchI GAGTC 4 cut(s) 163, 226, 275, 646
ScrFI CCNGG 4 cut(s) 507, 711, 851, 930
SduI GDGCHC 5 cut(s) 31, 324, 428, 582, 928
SfaNI GCATC 1 cut(s) 832
SfcI CTRYAG 2 cut(s) 453, 522
SmiMI CAYNNNNRTG 1 cut(s) 146
SmlI CTYRAG 2 cut(s) 227, 299
SmoI CTYRAG 2 cut(s) 227, 299
Sse9I AATT 8 cut(s) 220, 475, 514, 532, 655, 699, 751, 887
SsiI CCGC 2 cut(s) 50, 745
SspMI CTAG 1 cut(s) 836
SstI GAGCTC 2 cut(s) 428, 928
StyD4I CCNGG 4 cut(s) 505, 709, 849, 928
StyI CCWWGG 1 cut(s) 147
TaiI ACGT 3 cut(s) 630, 969, 975
TaqI TCGA 3 cut(s) 348, 755, 826
TasI AATT 8 cut(s) 220, 475, 514, 532, 655, 699, 751, 887
TauI GCSGC 1 cut(s) 747
TfiI GAWTC 2 cut(s) 502, 736
Tru1I TTAA 1 cut(s) 569
Tru9I TTAA 1 cut(s) 569
TscAI CASTG 4 cut(s) 685, 987, 1011, 1053
TseFI GTSAC 1 cut(s) 676
TseI GCWGC 2 cut(s) 62, 685
Tsp45I GTSAC 1 cut(s) 676
TspDTI ATGAA 5 cut(s) 143, 233, 396, 462, 863
TspRI CASTG 4 cut(s) 685, 987, 1011, 1053
Van91I CCANNNNNTGG 1 cut(s) 976
XagI CCTNNNNNAGG 2 cut(s) 912, 1059
XapI RAATTY 5 cut(s) 220, 475, 655, 751, 887
XspI CTAG 1 cut(s) 836
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.