Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001986.1

Orthogroup ID

OG0009267

Physical Location & Seq

Genomic Coordinates Forward (+)

5008 .. 13347

Gene Structure 8340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2457 bp

atgaggcagaaggctcaactcctgcttgatgaggctgcttcctggtccctcctctggtacctttttggaaaagggaccgaagagacccctaaagaacttatcttgtttccctcaacatcacatttggaggcttgccagtttgttgcggacgatcttacagcacagttatgcttacgaattgttcaatggctagaaggcttgacttccaaagcacttgatctggaaagaaaggtgcgagggtctcacgttggtgcctgtctcccaagctctggaatttggttccatactcaacgctatcttaagaaaggaacatccagtgcaaatactgttcatcacttggattttgatgcctcgacacgagaacaggctcatctactacctgatgacaaagtatttttcttgtcagtactaacagttttacccaatcagaaacatgatgaatctcttttggaagatgtctggactcttttgagagcaggaagactggaggaggcatgtaacctttgccggtctaagggacaggcatggagagctgcaaccttgtgcatatttggaggttctgaccaatctccgtcaattgaagccctggtgaggaatggaaagaatagaaccttgcaagccattgaattggaaagtcgcattggccaccaatggtatctctggaaatgggcttcttattgtgcatcagagaaaatagctgagcaagatgctggcaaatatgaagcagcagtctatgcggcacaatgtagcaatttaaggcgcatgcttccaatctgcactgactgggagtcagcgtgctgggcaatagcaaagtcatggctagattttcaggtggatttggaattggctcatttacaaccagaaagactggatcaaattacaagcactgcagatgcaattgatggaagtccagcacatggtgatggagctgttcagccttcaagtggaccaggaagttggccactacaagtttcaaaccagcaaccacggcaacttttagatctcattcagaaacttcattcaggggaattggtccacgaaagtgttactcgaggatgcaaggaaccacaacgacaaattgagcttgcacgccaccgttgcattgacctcttcgtgcacatgatggaattgaggctggacagcagcgtgcatgtcaaatataagatcttcctctctgctatagagtatttacaattttctcctctagacaattcaaattcaaaagcaagttttgaagaaattgttgagagggttttttcaagatctcgggaaatcaaagttagtcaatatgataagatatcaggtgttgcagaacagcaccggttgcagagtcttcaaaaagcgatggttatccagtggctatgttttacacccccctccaccattagtaatgttaaggatgtcggcagaaaacttcttctgcgagcactagtacatagcaatatattgttcagggagttttcactggtttcaatgtggagagttcctgcagtgcccattggtgcccacacagtacttagttttcttgctgaacctttgaagcaactttcggaatcttctgataccttggaggatgtttctcaaaacctgaaagagttccacgactggaatgagtattattcttgtgatgcaaaataccggaattggctcaaaattaaattagagaatgcagaggtgtccccagttgacctctcaatggatgaaaaacaaagggctgtttcagcagccaaggagactttgaattcatctctgtcattgctactgagaaaagaaaatccttggttagcttctggtgaagatcatgcctatggatctgtggaacctacatttcttgaattgcatgccacagcaatgctatgcttgccttctggtgagtgtctgtttccagatgcaactgtgtgtacaacgttgatgagtgctctttactcttccgtgagtgaggaagatgtgttaaaccgccaattaatgttaaatgtctccatatcatcaaaggataattgctgcatagaggttgtgcttcgctgcttggcagttccaggtgatggttttgggccacaggaacatgatgatggaggtattcttggtactgttatggctgccggcttcaaaggtgagctacctcgatttcaacctggagttacaatggacatttcccgattagatgcctggtattcaagcaaggatggttctttagaaagtccagcaacatacattgtgcagggcctttgtcgtaggtgctgtcttccagaagtcattcttcgatgcatgcaggtctcactctcgctcatggagttgggtattgcacctgaaagccatgatcagttgattgaattagttgcttgccctgaagctgggtttcttcatttgtttagtcaccaacaattgcaggaatttttattgtttgaaagggaatactcgataagccaaatggaggttcaagaggaaatttcttcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000972 GO:0000973 GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006355 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006999 GO:0008104 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016043 GO:0017038 GO:0017056 GO:0019219 GO:0019222 GO:0022607 GO:0031080 GO:0031090 GO:0031323 GO:0031326 GO:0031503 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0033036 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0034622 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0046931 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0051028 GO:0051168 GO:0051169 GO:0051170 GO:0051171 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051276 GO:0051292 GO:0051641 GO:0051649 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nup84_Nup100

Protein Analysis

818

Amino Acids

91.88

Weight (kDa)

5.36

Isoelectric Point (pI)

49.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nup84_Nup100	PF04121	8 - 303	3.2e-33	Nuclear pore protein 84 / 107

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14120 AT3G14120 AT3G14120
fragaria_vesca	FvH4_6g35170 FvH4_6g35170
malus_domestica	MD09G1178100.v1.1 MD17G1148600.v1.1
prunus_persica	Prupe.3G037400_v2.0.a1 Prupe.3G037400_v2.0.a1
pyrus_communis	pycom09g09650 pycom17g14190
rosa_chinensis	RchiOBHm_Chr2g0146431
rosa_laevigata	RLG00000020200
rosa_multiflora	Rmu_sc0001986.1_g000003 Rmu_sc0030037.1_g000003
rosa_roxburghii	Rroxscaffold_2G00100100
rosa_rugosa	Rorug02G0394300
rosa_samantha	Rh2AG451100 Rh2BG463600 Rh2CG437900 Rh2DG472600
rosa_wichuraiana	Rw2G036820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2260
Acc65I	GGTACC	1 cut(s)	57
AccB1I	GGYRCC	3 cut(s)	57, 251, 1502
AccB7I	CCANNNNNTGG	3 cut(s)	269, 917, 2042
AciI	CCGC	3 cut(s)	146, 737, 1957
AclI	AACGTT	1 cut(s)	1907
AclWI	GGATC	2 cut(s)	879, 1819
AcoI	YGGCCR	2 cut(s)	643, 959
AcsI	RAATTY	5 cut(s)	273, 1216, 1741, 2390, 2445
AcuI	CTGAAG	1 cut(s)	2367
AdeI	CACNNNGTG	1 cut(s)	920
AfaI	GTAC	6 cut(s)	59, 408, 1434, 1515, 1903, 2086
AflII	CTTAAG	1 cut(s)	299
AgeI	ACCGGT	1 cut(s)	1320
AhdI	GACNNNNNGTC	1 cut(s)	787
AhlI	ACTAGT	1 cut(s)	1429
AjnI	CCWGG	6 cut(s)	41, 585, 949, 2035, 2131, 2165
AjuI	GAANNNNNNNTTGG	4 cut(s)	624, 656, 2418, 2450
AleI	CACNNNNGTG	2 cut(s)	249, 1041
AluBI	AGCT	8 cut(s)	267, 533, 698, 929, 1084, 1787, 2116, 2351
AluI	AGCT	8 cut(s)	267, 533, 698, 929, 1084, 1787, 2116, 2351
Alw21I	GWGCWC	3 cut(s)	1119, 1429, 1921
Alw26I	GTCTC	6 cut(s)	77, 246, 263, 1727, 1981, 2278
Alw44I	GTGCAC	1 cut(s)	1115
AlwI	GGATC	2 cut(s)	879, 1819
Ama87I	CYCGRG	2 cut(s)	1050, 1266
AoxI	GGCC	4 cut(s)	643, 959, 2051, 2221
ApaLI	GTGCAC	1 cut(s)	1115
ApeKI	GCWGC	8 cut(s)	35, 533, 725, 1143, 1724, 2001, 2022, 2096
ApoI	RAATTY	5 cut(s)	273, 1216, 1741, 2390, 2445
AseI	ATTAAT	1 cut(s)	1964
AsiGI	ACCGGT	1 cut(s)	1320
Asp700I	GAANNNNTTC	2 cut(s)	1595, 2253
Asp718I	GGTACC	1 cut(s)	57
AspLEI	GCGC	1 cut(s)	762
AspS9I	GGNCC	6 cut(s)	45, 75, 947, 1033, 2051, 2221
AsuHPI	GGTGA	7 cut(s)	601, 932, 1805, 1883, 2051, 2123, 2366
AvaI	CYCGRG	2 cut(s)	1050, 1266
AvaII	GGWCC	4 cut(s)	45, 75, 947, 1033
BaeGI	GKGCMC	3 cut(s)	1119, 1497, 1507
BalI	TGGCCA	2 cut(s)	645, 961
BanI	GGYRCC	3 cut(s)	57, 251, 1502
BauI	CACGAG	1 cut(s)	357
BbsI	GAAGAC	3 cut(s)	487, 1325, 2234
Bbv12I	GWGCWC	3 cut(s)	1119, 1429, 1921
BbvI	GCAGC	8 cut(s)	22, 520, 737, 1155, 1736, 1988, 2009, 2083
BccI	CCATC	7 cut(s)	896, 917, 1117, 1339, 2036, 2063, 2177
BceAI	ACGGC	1 cut(s)	1004
BciT130I	CCWGG	6 cut(s)	43, 587, 951, 2037, 2133, 2167
BclI	TGATCA	1 cut(s)	2317
BcoDI	GTCTC	6 cut(s)	77, 246, 263, 1727, 1981, 2278
BcuI	ACTAGT	1 cut(s)	1429
BfaI	CTAG	4 cut(s)	191, 821, 1205, 1430
BfmI	CTRYAG	3 cut(s)	888, 1179, 1488
BfrI	CTTAAG	1 cut(s)	299
BfuAI	ACCTGC	1 cut(s)	2260
BglII	AGATCT	3 cut(s)	1000, 1164, 1262
BisI	GCNGC	9 cut(s)	36, 534, 726, 738, 1144, 1725, 2002, 2023, 2097
BlpI	GCTNAGC	1 cut(s)	699
BlsI	GCNGC	9 cut(s)	37, 535, 727, 739, 1145, 1726, 2003, 2024, 2098
BmcAI	AGTACT	2 cut(s)	408, 1515
Bme1390I	CCNGG	6 cut(s)	43, 587, 951, 2037, 2133, 2167
Bme18I	GGWCC	4 cut(s)	45, 75, 947, 1033
BmeRI	GACNNNNNGTC	1 cut(s)	787
BmeT110I	CYCGRG	2 cut(s)	1050, 1266
BmgT120I	GGNCC	6 cut(s)	45, 75, 947, 1033, 2051, 2221
BmiI	GGNNCC	8 cut(s)	47, 59, 76, 253, 281, 1065, 1504, 1821
BmrFI	CCNGG	6 cut(s)	43, 587, 951, 2037, 2133, 2167
BmrI	ACTGGG	2 cut(s)	793, 1676
BmsI	GCATC	9 cut(s)	337, 692, 697, 883, 1046, 1618, 1879, 2152, 2252
BmuI	ACTGGG	2 cut(s)	793, 1676
BpiI	GAAGAC	3 cut(s)	487, 1325, 2234
BpmI	CTGGAG	2 cut(s)	506, 2154
Bpu1102I	GCTNAGC	1 cut(s)	699
BsaBI	GATNNNNATC	1 cut(s)	1349
BsaI	GGTCTC	3 cut(s)	77, 246, 2278
BsaJI	CCNNGG	5 cut(s)	585, 986, 1566, 1728, 1778
BsaWI	WCCGGW	2 cut(s)	1320, 1638
BsaXI	ACNNNNNCTCC	2 cut(s)	779, 809
Bse118I	RCCGGY	3 cut(s)	507, 1320, 2099
Bse1I	ACTGG	9 cut(s)	136, 315, 489, 788, 873, 1354, 1470, 1610, 1682
Bse3DI	GCAATG	2 cut(s)	1754, 1857
Bse8I	GATNNNNATC	1 cut(s)	1349
BseBI	CCWGG	6 cut(s)	43, 587, 951, 2037, 2133, 2167
BseDI	CCNNGG	5 cut(s)	585, 986, 1566, 1728, 1778
BseGI	GGATG	6 cut(s)	311, 1061, 1405, 1579, 1705, 2188
BseJI	GATNNNNATC	1 cut(s)	1349
BseMI	GCAATG	2 cut(s)	1754, 1857
BseMII	CTCAG	2 cut(s)	690, 1754
BseNI	ACTGG	9 cut(s)	136, 315, 489, 788, 873, 1354, 1470, 1610, 1682
BseRI	GAGGAG	3 cut(s)	41, 503, 1191
BseSI	GKGCMC	3 cut(s)	1119, 1497, 1507
BseXI	GCAGC	8 cut(s)	22, 520, 737, 1155, 1736, 1988, 2009, 2083
BseYI	CCCAGC	2 cut(s)	798, 2351
BsgI	GTGCAG	2 cut(s)	760, 2237
BshFI	GGCC	4 cut(s)	645, 961, 2053, 2223
BshNI	GGYRCC	3 cut(s)	57, 251, 1502
BshTI	ACCGGT	1 cut(s)	1320
BsiHKAI	GWGCWC	3 cut(s)	1119, 1429, 1921
BsiHKCI	CYCGRG	2 cut(s)	1050, 1266
BsiSI	CCGG	4 cut(s)	508, 1321, 1639, 2100
BslFI	GGGAC	4 cut(s)	31, 88, 531, 1663
BsmAI	GTCTC	6 cut(s)	77, 246, 263, 1727, 1981, 2278
BsmFI	GGGAC	4 cut(s)	31, 88, 531, 1663
BsmI	GAATGC	1 cut(s)	1672
BsnI	GGCC	4 cut(s)	645, 961, 2053, 2223
Bso31I	GGTCTC	3 cut(s)	77, 246, 2278
BsoBI	CYCGRG	2 cut(s)	1050, 1266
Bsp1286I	GDGCHC	5 cut(s)	1119, 1429, 1497, 1507, 1921
Bsp1407I	TGTACA	1 cut(s)	1901
Bsp143I	GATC	9 cut(s)	151, 217, 871, 1000, 1164, 1262, 1798, 1811, 2317
Bsp1720I	GCTNAGC	1 cut(s)	699
BspACI	CCGC	3 cut(s)	146, 737, 1957
BspANI	GGCC	4 cut(s)	645, 961, 2053, 2223
BspCNI	CTCAG	2 cut(s)	691, 1755
BspLI	GGNNCC	8 cut(s)	47, 59, 76, 253, 281, 1065, 1504, 1821
BspMAI	CTGCAG	2 cut(s)	892, 1492
BspMI	ACCTGC	1 cut(s)	2260
BspPI	GGATC	2 cut(s)	879, 1819
BspT107I	GGYRCC	3 cut(s)	57, 251, 1502
BspTI	CTTAAG	1 cut(s)	299
BspTNI	GGTCTC	3 cut(s)	77, 246, 2278
BsrDI	GCAATG	2 cut(s)	1754, 1857
BsrFI	RCCGGY	3 cut(s)	507, 1320, 2099
BsrGI	TGTACA	1 cut(s)	1901
BsrI	ACTGG	9 cut(s)	136, 315, 489, 788, 873, 1354, 1470, 1610, 1682
BssAI	RCCGGY	3 cut(s)	507, 1320, 2099
BssECI	CCNNGG	5 cut(s)	585, 986, 1566, 1728, 1778
BssMI	GATC	9 cut(s)	151, 217, 871, 1000, 1164, 1262, 1798, 1811, 2317
BssSI	CACGAG	1 cut(s)	357
BssT1I	CCWWGG	3 cut(s)	1566, 1728, 1778
Bst2BI	CACGAG	1 cut(s)	357
Bst2UI	CCWGG	6 cut(s)	43, 587, 951, 2037, 2133, 2167
Bst4CI	ACNGT	7 cut(s)	165, 328, 415, 1097, 1513, 1897, 2089
Bst6I	CTCTTC	3 cut(s)	75, 1115, 1933
BstAFI	CTTAAG	1 cut(s)	299
BstAPI	GCANNNNNTGC	2 cut(s)	734, 1324
BstAUI	TGTACA	1 cut(s)	1901
BstDEI	CTNAG	4 cut(s)	513, 699, 1517, 1763
BstDSI	CCRYGG	1 cut(s)	986
BstF5I	GGATG	6 cut(s)	311, 1061, 1405, 1579, 1705, 2188
BstHHI	GCGC	1 cut(s)	762
BstKTI	GATC	9 cut(s)	154, 220, 874, 1003, 1167, 1265, 1801, 1814, 2320
BstMAI	GTCTC	6 cut(s)	77, 246, 263, 1727, 1981, 2278
BstMBI	GATC	9 cut(s)	151, 217, 871, 1000, 1164, 1262, 1798, 1811, 2317
BstMWI	GCNNNNNNNGC	8 cut(s)	530, 734, 800, 988, 1098, 1324, 1721, 1861
BstNI	CCWGG	6 cut(s)	43, 587, 951, 2037, 2133, 2167
BstNSI	RCATGY	5 cut(s)	498, 766, 1154, 1844, 2269
BstSCI	CCNGG	6 cut(s)	41, 585, 949, 2035, 2131, 2165
BstSFI	CTRYAG	3 cut(s)	888, 1179, 1488
BstSLI	GKGCMC	3 cut(s)	1119, 1497, 1507
BstV1I	GCAGC	8 cut(s)	22, 520, 737, 1155, 1736, 1988, 2009, 2083
BstV2I	GAAGAC	3 cut(s)	487, 1325, 2234
BstX2I	RGATCY	4 cut(s)	1000, 1164, 1262, 1811
BstXI	CCANNNNNNTGG	2 cut(s)	628, 957
BstYI	RGATCY	4 cut(s)	1000, 1164, 1262, 1811
BsuRI	GGCC	4 cut(s)	645, 961, 2053, 2223
BtgI	CCRYGG	1 cut(s)	986
BtgZI	GCGATG	1 cut(s)	1358
BtsCI	GGATG	6 cut(s)	311, 1061, 1405, 1579, 1705, 2188
BtsI	GCAGTG	2 cut(s)	885, 1497
BtsIMutI	CAGTG	6 cut(s)	322, 777, 885, 1361, 1463, 1497
BveI	ACCTGC	1 cut(s)	2260
CfoI	GCGC	1 cut(s)	762
Cfr10I	RCCGGY	3 cut(s)	507, 1320, 2099
Cfr13I	GGNCC	6 cut(s)	45, 75, 947, 1033, 2051, 2221
Csp6I	GTAC	6 cut(s)	58, 407, 1433, 1514, 1902, 2085
CspAI	ACCGGT	1 cut(s)	1320
CviQI	GTAC	6 cut(s)	58, 407, 1433, 1514, 1902, 2085
DdeI	CTNAG	4 cut(s)	513, 699, 1517, 1763
DpnI	GATC	9 cut(s)	153, 219, 873, 1002, 1166, 1264, 1800, 1813, 2319
DpnII	GATC	9 cut(s)	151, 217, 871, 1000, 1164, 1262, 1798, 1811, 2317
DraIII	CACNNNGTG	1 cut(s)	920
DriI	GACNNNNNGTC	1 cut(s)	787
EaeI	YGGCCR	2 cut(s)	643, 959
Eam1104I	CTCTTC	3 cut(s)	75, 1115, 1933
Eam1105I	GACNNNNNGTC	1 cut(s)	787
EarI	CTCTTC	3 cut(s)	75, 1115, 1933
Eco130I	CCWWGG	3 cut(s)	1566, 1728, 1778
Eco31I	GGTCTC	3 cut(s)	77, 246, 2278
Eco32I	GATATC	1 cut(s)	1299
Eco47I	GGWCC	4 cut(s)	45, 75, 947, 1033
Eco57I	CTGAAG	1 cut(s)	2367
Eco88I	CYCGRG	2 cut(s)	1050, 1266
EcoO109I	RGGNCCY	1 cut(s)	2221
EcoRI	GAATTC	1 cut(s)	1741
EcoRII	CCWGG	6 cut(s)	41, 585, 949, 2035, 2131, 2165
EcoRV	GATATC	1 cut(s)	1299
EcoT14I	CCWWGG	3 cut(s)	1566, 1728, 1778
EcoT22I	ATGCAT	1 cut(s)	2267
ErhI	CCWWGG	3 cut(s)	1566, 1728, 1778
FalI	AAGNNNNNCTT	2 cut(s)	2241, 2273
FaqI	GGGAC	4 cut(s)	31, 88, 531, 1663
FbaI	TGATCA	1 cut(s)	2317
Fnu4HI	GCNGC	9 cut(s)	36, 534, 726, 738, 1144, 1725, 2002, 2023, 2097
FokI	GGATG	6 cut(s)	298, 1068, 1412, 1586, 1712, 2195
Fsp4HI	GCNGC	9 cut(s)	36, 534, 726, 738, 1144, 1725, 2002, 2023, 2097
FspBI	CTAG	4 cut(s)	191, 821, 1205, 1430
GlaI	GCGC	1 cut(s)	761
GluI	GCNGC	9 cut(s)	36, 534, 726, 738, 1144, 1725, 2002, 2023, 2097
GsaI	CCCAGC	2 cut(s)	802, 2355
GsuI	CTGGAG	2 cut(s)	506, 2154
HaeIII	GGCC	4 cut(s)	645, 961, 2053, 2223
HapII	CCGG	4 cut(s)	508, 1321, 1639, 2100
HhaI	GCGC	1 cut(s)	762
Hin6I	GCGC	1 cut(s)	760
HinP1I	GCGC	1 cut(s)	760
HincII	GTYRAC	1 cut(s)	1687
HindII	GTYRAC	1 cut(s)	1687
HinfI	GANTC	5 cut(s)	440, 463, 788, 1330, 1553
HpaII	CCGG	4 cut(s)	508, 1321, 1639, 2100
HphI	GGTGA	7 cut(s)	601, 932, 1805, 1883, 2051, 2123, 2366
Hpy166II	GTNNAC	5 cut(s)	947, 1036, 1117, 1687, 1902
Hpy188I	TCNGA	6 cut(s)	429, 562, 688, 1011, 1552, 1561
Hpy8I	GTNNAC	5 cut(s)	947, 1036, 1117, 1687, 1902
HpyAV	CCTTC	4 cut(s)	4, 188, 948, 1875
HpyCH4III	ACNGT	7 cut(s)	165, 328, 415, 1097, 1513, 1897, 2089
HpyCH4IV	ACGT	2 cut(s)	246, 1907
HpyF10VI	GCNNNNNNNGC	8 cut(s)	530, 734, 800, 988, 1098, 1324, 1721, 1861
HpyF3I	CTNAG	4 cut(s)	513, 699, 1517, 1763
HpySE526I	ACGT	2 cut(s)	246, 1907
HspAI	GCGC	1 cut(s)	760
KpnI	GGTACC	1 cut(s)	61
KroI	GCCGGC	1 cut(s)	2099
KroNI	GCCGGC	1 cut(s)	2101
Ksp22I	TGATCA	1 cut(s)	2317
Kzo9I	GATC	9 cut(s)	151, 217, 871, 1000, 1164, 1262, 1798, 1811, 2317
LmnI	GCTCC	1 cut(s)	926
Lsp1109I	GCAGC	8 cut(s)	22, 520, 737, 1155, 1736, 1988, 2009, 2083
LweI	GCATC	9 cut(s)	337, 692, 697, 883, 1046, 1618, 1879, 2152, 2252
MaeI	CTAG	4 cut(s)	191, 821, 1205, 1430
MaeII	ACGT	2 cut(s)	246, 1907
MaeIII	GTNAC	4 cut(s)	497, 1045, 2137, 2372
MalI	GATC	9 cut(s)	153, 219, 873, 1002, 1166, 1264, 1800, 1813, 2319
MboI	GATC	9 cut(s)	151, 217, 871, 1000, 1164, 1262, 1798, 1811, 2317
MfeI	CAATTG	3 cut(s)	576, 897, 2381
MflI	RGATCY	4 cut(s)	1000, 1164, 1262, 1811
MhlI	GDGCHC	5 cut(s)	1119, 1429, 1497, 1507, 1921
MlsI	TGGCCA	2 cut(s)	645, 961
MluNI	TGGCCA	2 cut(s)	645, 961
MlyI	GAGTC	3 cut(s)	457, 797, 1339
Mox20I	TGGCCA	2 cut(s)	645, 961
Mph1103I	ATGCAT	1 cut(s)	2267
MroNI	GCCGGC	1 cut(s)	2099
MroXI	GAANNNNTTC	2 cut(s)	1595, 2253
MscI	TGGCCA	2 cut(s)	645, 961
MseI	TTAA	7 cut(s)	300, 755, 1395, 1656, 1952, 1964, 1970
MslI	CAYNNNNRTG	7 cut(s)	166, 249, 921, 1041, 1806, 1850, 2067
Msp20I	TGGCCA	2 cut(s)	645, 961
MspCI	CTTAAG	1 cut(s)	299
MspI	CCGG	4 cut(s)	508, 1321, 1639, 2100
MspR9I	CCNGG	6 cut(s)	43, 587, 951, 2037, 2133, 2167
MunI	CAATTG	3 cut(s)	576, 897, 2381
Mva1269I	GAATGC	1 cut(s)	1672
MvaI	CCWGG	6 cut(s)	43, 587, 951, 2037, 2133, 2167
MwoI	GCNNNNNNNGC	8 cut(s)	530, 734, 800, 988, 1098, 1324, 1721, 1861
NaeI	GCCGGC	1 cut(s)	2101
NdeII	GATC	9 cut(s)	151, 217, 871, 1000, 1164, 1262, 1798, 1811, 2317
NgoMIV	GCCGGC	1 cut(s)	2099
NlaIV	GGNNCC	8 cut(s)	47, 59, 76, 253, 281, 1065, 1504, 1821
NmuCI	GTSAC	1 cut(s)	2372
NsiI	ATGCAT	1 cut(s)	2267
NspI	RCATGY	5 cut(s)	498, 766, 1154, 1844, 2269
OliI	CACNNNNGTG	2 cut(s)	249, 1041
PaeI	GCATGC	3 cut(s)	766, 1844, 2269
PaeR7I	CTCGAG	1 cut(s)	1050
PctI	GAATGC	1 cut(s)	1672
PdiI	GCCGGC	1 cut(s)	2101
PdmI	GAANNNNTTC	2 cut(s)	1595, 2253
PfeI	GAWTC	2 cut(s)	440, 1553
PflMI	CCANNNNNTGG	3 cut(s)	269, 917, 2042
PinAI	ACCGGT	1 cut(s)	1320
PkrI	GCNGC	9 cut(s)	37, 535, 727, 739, 1145, 1726, 2003, 2024, 2098
PleI	GAGTC	3 cut(s)	457, 796, 1338
PpsI	GAGTC	3 cut(s)	457, 796, 1338
PshBI	ATTAAT	1 cut(s)	1964
Psp1406I	AACGTT	1 cut(s)	1907
Psp6I	CCWGG	6 cut(s)	41, 585, 949, 2035, 2131, 2165
PspFI	CCCAGC	2 cut(s)	798, 2351
PspGI	CCWGG	6 cut(s)	41, 585, 949, 2035, 2131, 2165
PspN4I	GGNNCC	8 cut(s)	47, 59, 76, 253, 281, 1065, 1504, 1821
PspPI	GGNCC	6 cut(s)	45, 75, 947, 1033, 2051, 2221
PspXI	VCTCGAGB	1 cut(s)	1050
PstI	CTGCAG	2 cut(s)	892, 1492
PsuI	RGATCY	4 cut(s)	1000, 1164, 1262, 1811
RsaI	GTAC	6 cut(s)	59, 408, 1434, 1515, 1903, 2086
RsaNI	GTAC	6 cut(s)	58, 407, 1433, 1514, 1902, 2085
RseI	CAYNNNNRTG	7 cut(s)	166, 249, 921, 1041, 1806, 1850, 2067
SaqAI	TTAA	7 cut(s)	300, 755, 1395, 1656, 1952, 1964, 1970
SatI	GCNGC	9 cut(s)	36, 534, 726, 738, 1144, 1725, 2002, 2023, 2097
Sau3AI	GATC	9 cut(s)	151, 217, 871, 1000, 1164, 1262, 1798, 1811, 2317
Sau96I	GGNCC	6 cut(s)	45, 75, 947, 1033, 2051, 2221
ScaI	AGTACT	2 cut(s)	408, 1515
SchI	GAGTC	3 cut(s)	457, 797, 1339
ScrFI	CCNGG	6 cut(s)	43, 587, 951, 2037, 2133, 2167
SduI	GDGCHC	5 cut(s)	1119, 1429, 1497, 1507, 1921
SfaNI	GCATC	9 cut(s)	337, 692, 697, 883, 1046, 1618, 1879, 2152, 2252
SfcI	CTRYAG	3 cut(s)	888, 1179, 1488
Sfr274I	CTCGAG	1 cut(s)	1050
SinI	GGWCC	4 cut(s)	45, 75, 947, 1033
SlaI	CTCGAG	1 cut(s)	1050
SmiMI	CAYNNNNRTG	7 cut(s)	166, 249, 921, 1041, 1806, 1850, 2067
SmlI	CTYRAG	2 cut(s)	299, 1050
SmoI	CTYRAG	2 cut(s)	299, 1050
SpeI	ACTAGT	1 cut(s)	1429
SphI	GCATGC	3 cut(s)	766, 1844, 2269
SsiI	CCGC	3 cut(s)	146, 737, 1957
SspMI	CTAG	4 cut(s)	191, 821, 1205, 1430
StyD4I	CCNGG	6 cut(s)	41, 585, 949, 2035, 2131, 2165
StyI	CCWWGG	3 cut(s)	1566, 1728, 1778
TaaI	ACNGT	7 cut(s)	165, 328, 415, 1097, 1513, 1897, 2089
TaiI	ACGT	2 cut(s)	249, 1910
TaqI	TCGA	5 cut(s)	353, 1051, 2122, 2260, 2417
TaqII	GACCGA	1 cut(s)	92
TatI	WGTACW	4 cut(s)	406, 1432, 1513, 1901
TauI	GCSGC	1 cut(s)	740
TfiI	GAWTC	2 cut(s)	440, 1553
Tru1I	TTAA	7 cut(s)	300, 755, 1395, 1656, 1952, 1964, 1970
Tru9I	TTAA	7 cut(s)	300, 755, 1395, 1656, 1952, 1964, 1970
TscAI	CASTG	6 cut(s)	322, 784, 892, 1361, 1470, 1497
TseFI	GTSAC	1 cut(s)	2372
TseI	GCWGC	8 cut(s)	35, 533, 725, 1143, 1724, 2001, 2022, 2096
Tsp45I	GTSAC	1 cut(s)	2372
TspDTI	ATGAA	7 cut(s)	320, 453, 735, 1007, 1716, 1734, 2351
TspGWI	ACGGA	2 cut(s)	561, 1921
TspRI	CASTG	6 cut(s)	322, 784, 892, 1361, 1470, 1497
Van91I	CCANNNNNTGG	3 cut(s)	269, 917, 2042
Vha464I	CTTAAG	1 cut(s)	299
VneI	GTGCAC	1 cut(s)	1115
VpaK11BI	GGWCC	4 cut(s)	45, 75, 947, 1033
VspI	ATTAAT	1 cut(s)	1964
XapI	RAATTY	5 cut(s)	273, 1216, 1741, 2390, 2445
XbaI	TCTAGA	1 cut(s)	1204
XceI	RCATGY	5 cut(s)	498, 766, 1154, 1844, 2269
XhoI	CTCGAG	1 cut(s)	1050
XmnI	GAANNNNTTC	2 cut(s)	1595, 2253
XspI	CTAG	4 cut(s)	191, 821, 1205, 1430
ZrmI	AGTACT	2 cut(s)	408, 1515
Zsp2I	ATGCAT	1 cut(s)	2267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.