Rmu_sc0002046.1_g000005

Myelodysplasia-myeloid leukemia factor 1-interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002046.1
OG0015615
Physical Location & Seq
Reverse (-)
11436 .. 17094
5659 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1395 bp
atgtcaaggttgaactggaggggaactaggtatgaacgaatgaaaaagctgagaaagtgcgaagaggatctggagaacaccaaggcagaagtggagagtcccaaccgtcctcttccaagaaattgtagctacctttgggaatgtccggctctgactccagataccaccagctcctcaccttttgccctggcaaaggcggatttgttggaaaagggctatgatgcacggaaccccaaattcccttcgtttcctgtatcgatcagggaaaagggagctggcggtggcagaaatgggcaggctggtcagggaggttgggcacttcctagcaacgatcttctacagaactctggaaatatgatagcagatgcccaaggcaaagcagtaccttctcggtcgcagcggtctgtagagtgccctttctttactcgcccgtttggagggatatttgactcgggttttccgggtatgggtggaggcatgtttcctggaaggggtagcggtatgtttcctggaataggtggcggtatgtttcctggaatcggtggcagtatgtttcctggaatgggtcctggtatgaatggagatattttttcagatatgcggccaactgggttcattgagaatcacgatcaggctccagagcggcagaaatctaggggtccgatcattgaggaaatagactctgatcatgaagaagaagaggctaatagtgagaagaaggaaaatccgcggaaacgtcttgggccaagcaatgatccttatgttgagcaccctgatgatgtagttgaagagaagaagagcaagcatttgcaatctagggacaactacagtcagtttggtgctatgcaatcacagcctcaagctcatagctacacatttcagagctccagtgtcacttatggcggtggtaatggtgcatactatacatcttccaagacaagaaggatggggagtgatggggttgcttttgaagaaagcaaagaagctgatacttcttctgggaaagcgacacacagggtatctaaggggctccacaataagggccattcaattactaggaagctcaaagagggtaaggtagatacaatgcagactttgcataaccttaatgaagatgagctttccggttttgaacatgcatggaagggagctgctcaaaaacatatgcctggattgaatgatcagtttgctagttatgaaagtctaggagctggcggtggcagaaatgggcaggctggtcagggaggttgggcacttcctagcaacgatcttctacagaactctggaaatatgatagcagatgcccaaggcaaagcagtaccttctcggtcgcagcagtctggtaatatgagagtagatggtactaattcttcccgtgggagagcaaaagattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05202 map05202
Pfam Domains
Protein Families
Mlf1IP

Protein Analysis

464

Amino Acids

50.2

Weight (kDa)

7.71

Isoelectric Point (pI)

52.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mlf1IP PF10248 223 - 383 6.9e-21 Myelodysplasia-myeloid leukemia factor 1-interacting protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015615)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g00720
malus_domestica MD04G1079300.v1.1
prunus_persica Prupe.5G079800_v2.0.a1
pyrus_communis pycom04g07110
rosa_chinensis RchiOBHm_Chr7g0201491
rosa_laevigata RLG00000003669
rosa_multiflora Rmu_co8397869.1_g000001 Rmu_sc0002046.1_g000005 Rmu_sc0017656.1_g000004
rosa_roxburghii Rroxscaffold_3G00255260
rosa_rugosa Rorug07G0064300
rosa_samantha Rh7AG190900 Rh7BG193200 Rh7CG202300 Rh7DG195900
rosa_wichuraiana Rw7G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 643
AccII CGCG 1 cut(s) 730
AclWI GGATC 2 cut(s) 75, 749
AcoI YGGCCR 1 cut(s) 602
AcsI RAATTY 1 cut(s) 236
AfaI GTAC 3 cut(s) 384, 1320, 1363
AfiI CCNNNNNNNGG 8 cut(s) 193, 437, 467, 491, 515, 539, 563, 1039
AgsI TTSAA 6 cut(s) 13, 788, 971, 1050, 1133, 1177
AjnI CCWGG 7 cut(s) 186, 484, 508, 532, 556, 568, 1168
Alw21I GWGCWC 2 cut(s) 771, 887
AlwI GGATC 2 cut(s) 75, 749
Ama87I CYCGRG 1 cut(s) 451
AoxI GGCC 3 cut(s) 602, 743, 1042
ApeKI GCWGC 3 cut(s) 397, 1151, 1333
ApoI RAATTY 1 cut(s) 236
AspS9I GGNCC 4 cut(s) 566, 659, 743, 1042
AsuC2I CCSGG 1 cut(s) 462
AsuHPI GGTGA 1 cut(s) 168
AvaI CYCGRG 1 cut(s) 451
AvaII GGWCC 2 cut(s) 566, 659
BaeGI GKGCMC 3 cut(s) 319, 416, 1255
BanII GRGCYC 2 cut(s) 887, 1032
BarI GAAGNNNNNNTAC 2 cut(s) 1354, 1386
Bbv12I GWGCWC 2 cut(s) 771, 887
BbvI GCAGC 3 cut(s) 409, 1138, 1345
BccI CCATC 3 cut(s) 940, 950, 1352
BciT130I CCWGG 7 cut(s) 188, 486, 510, 534, 558, 570, 1170
BclI TGATCA 2 cut(s) 685, 1180
BcnI CCSGG 1 cut(s) 462
BfaI CTAG 8 cut(s) 27, 324, 654, 816, 1056, 1191, 1205, 1260
BfmI CTRYAG 4 cut(s) 338, 405, 826, 1274
BisI GCNGC 5 cut(s) 398, 602, 644, 1152, 1334
BlsI GCNGC 5 cut(s) 399, 603, 645, 1153, 1335
Bme1390I CCNGG 8 cut(s) 188, 462, 486, 510, 534, 558, 570, 1170
Bme18I GGWCC 2 cut(s) 566, 659
BmeT110I CYCGRG 1 cut(s) 451
BmgT120I GGNCC 4 cut(s) 566, 659, 743, 1042
BmiI GGNNCC 5 cut(s) 230, 567, 636, 660, 1031
BmrFI CCNGG 8 cut(s) 188, 462, 486, 510, 534, 558, 570, 1170
BmrI ACTGGG 1 cut(s) 618
BmsI GCATC 3 cut(s) 211, 355, 1291
BmuI ACTGGG 1 cut(s) 618
BpmI CTGGAG 5 cut(s) 37, 92, 141, 621, 871
BpuEI CTTGAG 1 cut(s) 843
BpuMI CCSGG 1 cut(s) 462
Bsa29I ATCGAT 1 cut(s) 257
BsaJI CCNNGG 6 cut(s) 81, 186, 370, 728, 1306, 1375
BsaWI WCCGGW 1 cut(s) 1124
Bsc4I CCNNNNNNNGG 8 cut(s) 193, 437, 467, 491, 515, 539, 563, 1039
Bse1I ACTGG 3 cut(s) 20, 613, 888
Bse3DI GCAATG 1 cut(s) 757
BseBI CCWGG 7 cut(s) 188, 486, 510, 534, 558, 570, 1170
BseCI ATCGAT 1 cut(s) 257
BseDI CCNNGG 6 cut(s) 81, 186, 370, 728, 1306, 1375
BseGI GGATG 1 cut(s) 951
BseLI CCNNNNNNNGG 8 cut(s) 193, 437, 467, 491, 515, 539, 563, 1039
BseMI GCAATG 1 cut(s) 757
BseMII CTCAG 1 cut(s) 41
BseNI ACTGG 3 cut(s) 20, 613, 888
BseRI GAGGAG 1 cut(s) 163
BseSI GKGCMC 3 cut(s) 319, 416, 1255
BseXI GCAGC 3 cut(s) 409, 1138, 1345
Bsh1236I CGCG 1 cut(s) 730
Bsh1285I CGRYCG 2 cut(s) 395, 1331
BshFI GGCC 3 cut(s) 604, 745, 1044
BshVI ATCGAT 1 cut(s) 257
BsiEI CGRYCG 2 cut(s) 395, 1331
BsiHKAI GWGCWC 2 cut(s) 771, 887
BsiHKCI CYCGRG 1 cut(s) 451
BsiSI CCGG 3 cut(s) 146, 461, 1125
BslFI GGGAC 2 cut(s) 84, 833
BslI CCNNNNNNNGG 8 cut(s) 193, 437, 467, 491, 515, 539, 563, 1039
BsmFI GGGAC 2 cut(s) 84, 833
BsnI GGCC 3 cut(s) 604, 745, 1044
BsoBI CYCGRG 1 cut(s) 451
Bsp1286I GDGCHC 6 cut(s) 319, 416, 771, 887, 1032, 1255
Bsp143I GATC 9 cut(s) 67, 258, 331, 628, 663, 685, 754, 1180, 1267
BspANI GGCC 3 cut(s) 604, 745, 1044
BspCNI CTCAG 1 cut(s) 42
BspDI ATCGAT 1 cut(s) 257
BspFNI CGCG 1 cut(s) 730
BspHI TCATGA 1 cut(s) 688
BspLI GGNNCC 5 cut(s) 230, 567, 636, 660, 1031
BspPI GGATC 2 cut(s) 75, 749
BspQI GCTCTTC 1 cut(s) 791
BsrBI CCGCTC 1 cut(s) 643
BsrDI GCAATG 1 cut(s) 757
BsrI ACTGG 3 cut(s) 20, 613, 888
BssECI CCNNGG 6 cut(s) 81, 186, 370, 728, 1306, 1375
BssMI GATC 9 cut(s) 67, 258, 331, 628, 663, 685, 754, 1180, 1267
BssT1I CCWWGG 3 cut(s) 81, 370, 1306
Bst2UI CCWGG 7 cut(s) 188, 486, 510, 534, 558, 570, 1170
Bst4CI ACNGT 2 cut(s) 107, 830
Bst6I CTCTTC 5 cut(s) 57, 117, 693, 783, 791
BstAPI GCANNNNNTGC 1 cut(s) 1096
BstC8I GCNNGC 5 cut(s) 277, 297, 803, 1213, 1233
BstDEI CTNAG 2 cut(s) 50, 1023
BstDSI CCRYGG 2 cut(s) 728, 1375
BstENI CCTNNNNNAGG 2 cut(s) 191, 513
BstF5I GGATG 1 cut(s) 951
BstFNI CGCG 1 cut(s) 730
BstKTI GATC 9 cut(s) 70, 261, 334, 631, 666, 688, 757, 1183, 1270
BstMBI GATC 9 cut(s) 67, 258, 331, 628, 663, 685, 754, 1180, 1267
BstMCI CGRYCG 2 cut(s) 395, 1331
BstMWI GCNNNNNNNGC 2 cut(s) 853, 1096
BstNI CCWGG 7 cut(s) 188, 486, 510, 534, 558, 570, 1170
BstNSI RCATGY 2 cut(s) 481, 1139
BstSCI CCNGG 8 cut(s) 186, 460, 484, 508, 532, 556, 568, 1168
BstSFI CTRYAG 4 cut(s) 338, 405, 826, 1274
BstSLI GKGCMC 3 cut(s) 319, 416, 1255
BstUI CGCG 1 cut(s) 730
BstV1I GCAGC 3 cut(s) 409, 1138, 1345
BstX2I RGATCY 1 cut(s) 67
BstYI RGATCY 1 cut(s) 67
Bsu15I ATCGAT 1 cut(s) 257
BsuRI GGCC 3 cut(s) 604, 745, 1044
BsuTUI ATCGAT 1 cut(s) 257
BtgI CCRYGG 2 cut(s) 728, 1375
BtsCI GGATG 1 cut(s) 951
BtsIMutI CAGTG 1 cut(s) 895
Cac8I GCNNGC 5 cut(s) 277, 297, 803, 1213, 1233
CciI TCATGA 1 cut(s) 688
Cfr13I GGNCC 4 cut(s) 566, 659, 743, 1042
Cfr42I CCGCGG 1 cut(s) 731
ClaI ATCGAT 1 cut(s) 257
Csp6I GTAC 3 cut(s) 383, 1319, 1362
CviAII CATG 4 cut(s) 478, 689, 1136, 1140
CviQI GTAC 3 cut(s) 383, 1319, 1362
DdeI CTNAG 2 cut(s) 50, 1023
DpnI GATC 9 cut(s) 69, 260, 333, 630, 665, 687, 756, 1182, 1269
DpnII GATC 9 cut(s) 67, 258, 331, 628, 663, 685, 754, 1180, 1267
EaeI YGGCCR 1 cut(s) 602
Eam1104I CTCTTC 5 cut(s) 57, 117, 693, 783, 791
EarI CTCTTC 5 cut(s) 57, 117, 693, 783, 791
EciI GGCGGA 1 cut(s) 212
Ecl136II GAGCTC 1 cut(s) 885
Eco130I CCWWGG 3 cut(s) 81, 370, 1306
Eco24I GRGCYC 2 cut(s) 887, 1032
Eco47I GGWCC 2 cut(s) 566, 659
Eco53kI GAGCTC 1 cut(s) 885
Eco88I CYCGRG 1 cut(s) 451
EcoICRI GAGCTC 1 cut(s) 885
EcoNI CCTNNNNNAGG 2 cut(s) 191, 513
EcoO109I RGGNCCY 1 cut(s) 566
EcoRII CCWGG 7 cut(s) 186, 484, 508, 532, 556, 568, 1168
EcoT14I CCWWGG 3 cut(s) 81, 370, 1306
EcoT22I ATGCAT 1 cut(s) 1141
EcoT38I GRGCYC 2 cut(s) 887, 1032
ErhI CCWWGG 3 cut(s) 81, 370, 1306
FaeI CATG 4 cut(s) 481, 692, 1139, 1143
FalI AAGNNNNNCTT 2 cut(s) 1104, 1136
FaqI GGGAC 2 cut(s) 84, 833
FatI CATG 4 cut(s) 477, 688, 1135, 1139
FauNDI CATATG 1 cut(s) 1164
FbaI TGATCA 2 cut(s) 685, 1180
Fnu4HI GCNGC 5 cut(s) 398, 602, 644, 1152, 1334
FokI GGATG 1 cut(s) 958
FriOI GRGCYC 2 cut(s) 887, 1032
Fsp4HI GCNGC 5 cut(s) 398, 602, 644, 1152, 1334
FspBI CTAG 8 cut(s) 27, 324, 654, 816, 1056, 1191, 1205, 1260
GluI GCNGC 5 cut(s) 398, 602, 644, 1152, 1334
GsuI CTGGAG 5 cut(s) 37, 92, 141, 621, 871
HaeIII GGCC 3 cut(s) 604, 745, 1044
HapII CCGG 3 cut(s) 146, 461, 1125
Hin1II CATG 4 cut(s) 481, 692, 1139, 1143
HinfI GANTC 6 cut(s) 97, 154, 449, 537, 622, 680
HpaII CCGG 3 cut(s) 146, 461, 1125
HphI GGTGA 1 cut(s) 168
Hpy188I TCNGA 5 cut(s) 153, 595, 663, 685, 882
Hpy188III TCNNGA 7 cut(s) 71, 158, 348, 626, 638, 689, 1284
HpyAV CCTTC 7 cut(s) 252, 396, 483, 712, 936, 1138, 1332
HpyCH4III ACNGT 2 cut(s) 107, 830
HpyCH4IV ACGT 1 cut(s) 736
HpyCH4V TGCA 7 cut(s) 224, 811, 847, 917, 1090, 1099, 1139
HpyF10VI GCNNNNNNNGC 2 cut(s) 853, 1096
HpyF3I CTNAG 2 cut(s) 50, 1023
HpySE526I ACGT 1 cut(s) 736
Hsp92II CATG 4 cut(s) 481, 692, 1139, 1143
Ksp22I TGATCA 2 cut(s) 685, 1180
KspI CCGCGG 1 cut(s) 731
Kzo9I GATC 9 cut(s) 67, 258, 331, 628, 663, 685, 754, 1180, 1267
LguI GCTCTTC 1 cut(s) 791
LmnI GCTCC 7 cut(s) 176, 272, 640, 890, 1035, 1148, 1208
Lsp1109I GCAGC 3 cut(s) 409, 1138, 1345
LweI GCATC 3 cut(s) 211, 355, 1291
MaeI CTAG 8 cut(s) 27, 324, 654, 816, 1056, 1191, 1205, 1260
MaeII ACGT 1 cut(s) 736
MaeIII GTNAC 1 cut(s) 892
MalI GATC 9 cut(s) 69, 260, 333, 630, 665, 687, 756, 1182, 1269
MbiI CCGCTC 1 cut(s) 643
MboI GATC 9 cut(s) 67, 258, 331, 628, 663, 685, 754, 1180, 1267
MflI RGATCY 1 cut(s) 67
MhlI GDGCHC 6 cut(s) 319, 416, 771, 887, 1032, 1255
MluCI AATT 4 cut(s) 121, 236, 1050, 1366
MlyI GAGTC 4 cut(s) 106, 148, 443, 674
MmeI TCCRAC 1 cut(s) 186
Mph1103I ATGCAT 1 cut(s) 1141
MseI TTAA 2 cut(s) 1107, 1393
MslI CAYNNNNRTG 1 cut(s) 774
MspA1I CMGCKG 2 cut(s) 400, 730
MspI CCGG 3 cut(s) 146, 461, 1125
MspR9I CCNGG 8 cut(s) 188, 462, 486, 510, 534, 558, 570, 1170
MvaI CCWGG 7 cut(s) 188, 486, 510, 534, 558, 570, 1170
MvnI CGCG 1 cut(s) 730
MwoI GCNNNNNNNGC 2 cut(s) 853, 1096
NciI CCSGG 1 cut(s) 462
NdeI CATATG 1 cut(s) 1164
NdeII GATC 9 cut(s) 67, 258, 331, 628, 663, 685, 754, 1180, 1267
NlaIII CATG 4 cut(s) 481, 692, 1139, 1143
NlaIV GGNNCC 5 cut(s) 230, 567, 636, 660, 1031
NmuCI GTSAC 1 cut(s) 892
NsiI ATGCAT 1 cut(s) 1141
NspI RCATGY 2 cut(s) 481, 1139
PagI TCATGA 1 cut(s) 688
PciSI GCTCTTC 1 cut(s) 791
PfeI GAWTC 2 cut(s) 537, 622
PfoI TCCNGGA 4 cut(s) 484, 508, 532, 556
PkrI GCNGC 5 cut(s) 399, 603, 645, 1153, 1335
PleI GAGTC 4 cut(s) 105, 148, 443, 674
PpsI GAGTC 4 cut(s) 105, 148, 443, 674
PpuMI RGGWCCY 1 cut(s) 566
Psp124BI GAGCTC 1 cut(s) 887
Psp5II RGGWCCY 1 cut(s) 566
Psp6I CCWGG 7 cut(s) 186, 484, 508, 532, 556, 568, 1168
PspGI CCWGG 7 cut(s) 186, 484, 508, 532, 556, 568, 1168
PspN4I GGNNCC 5 cut(s) 230, 567, 636, 660, 1031
PspPI GGNCC 4 cut(s) 566, 659, 743, 1042
PspPPI RGGWCCY 1 cut(s) 566
PsuI RGATCY 1 cut(s) 67
RsaI GTAC 3 cut(s) 384, 1320, 1363
RsaNI GTAC 3 cut(s) 383, 1319, 1362
RseI CAYNNNNRTG 1 cut(s) 774
SacI GAGCTC 1 cut(s) 887
SacII CCGCGG 1 cut(s) 731
SapI GCTCTTC 1 cut(s) 791
SaqAI TTAA 2 cut(s) 1107, 1393
SatI GCNGC 5 cut(s) 398, 602, 644, 1152, 1334
Sau3AI GATC 9 cut(s) 67, 258, 331, 628, 663, 685, 754, 1180, 1267
Sau96I GGNCC 4 cut(s) 566, 659, 743, 1042
SchI GAGTC 4 cut(s) 106, 148, 443, 674
ScrFI CCNGG 8 cut(s) 188, 462, 486, 510, 534, 558, 570, 1170
SduI GDGCHC 6 cut(s) 319, 416, 771, 887, 1032, 1255
SfaNI GCATC 3 cut(s) 211, 355, 1291
SfcI CTRYAG 4 cut(s) 338, 405, 826, 1274
Sfr303I CCGCGG 1 cut(s) 731
SgrBI CCGCGG 1 cut(s) 731
SinI GGWCC 2 cut(s) 566, 659
SmiMI CAYNNNNRTG 1 cut(s) 774
SmlI CTYRAG 1 cut(s) 858
SmoI CTYRAG 1 cut(s) 858
Sse9I AATT 4 cut(s) 121, 236, 1050, 1366
SspMI CTAG 8 cut(s) 27, 324, 654, 816, 1056, 1191, 1205, 1260
SstI GAGCTC 1 cut(s) 887
StyD4I CCNGG 8 cut(s) 186, 460, 484, 508, 532, 556, 568, 1168
StyI CCWWGG 3 cut(s) 81, 370, 1306
TaaI ACNGT 2 cut(s) 107, 830
TaiI ACGT 1 cut(s) 739
TaqI TCGA 1 cut(s) 257
TaqII GACCGA 2 cut(s) 381, 1317
TasI AATT 4 cut(s) 121, 236, 1050, 1366
TauI GCSGC 2 cut(s) 604, 646
TfiI GAWTC 2 cut(s) 537, 622
Tru1I TTAA 2 cut(s) 1107, 1393
Tru9I TTAA 2 cut(s) 1107, 1393
TscAI CASTG 1 cut(s) 895
TseFI GTSAC 1 cut(s) 892
TseI GCWGC 3 cut(s) 397, 1151, 1333
Tsp45I GTSAC 1 cut(s) 892
TspDTI ATGAA 7 cut(s) 48, 56, 590, 604, 705, 1125, 1212
TspGWI ACGGA 1 cut(s) 241
TspRI CASTG 1 cut(s) 895
VpaK11BI GGWCC 2 cut(s) 566, 659
XagI CCTNNNNNAGG 2 cut(s) 191, 513
XapI RAATTY 1 cut(s) 236
XceI RCATGY 2 cut(s) 481, 1139
XcmI CCANNNNNNNNNTGG 1 cut(s) 88
XspI CTAG 8 cut(s) 27, 324, 654, 816, 1056, 1191, 1205, 1260
Zsp2I ATGCAT 1 cut(s) 1141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.