Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002219.1

Orthogroup ID

OG0008101

Physical Location & Seq

Genomic Coordinates Reverse (-)

41831 .. 42835

Gene Structure 1005 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

atgattgcaatttacgctcaaaatggatctgcggcggaggggttgaattgttttaatctcatgagaagggctggagtttatccttatgatggtactcttgtgtctttgcttcaagtttgcgagaatttaggtttagggaatctagcacagggcgtccatggtttaattatcaagtgtggatgtagtgcaaatgtcagagttgcaacgggagttctagatttgtatacgaagttggggcgattagattattcacttaaggttttcaaggaggtaattgatccggataaagtagcttggactgcaatgcttgcaggttatgctacgcatggctatggacgagaagctatggagatctttgaaagcatggttaggaaaggtgtgcagcctgatcacgtcaccttcactcacttgttaagtgcttgtagccattcaggactaattaaggaaaggaggaattacttcaacattatgtctgaagtttatggagtagagcctaggttggatcactattcatgcatggttgatcttctggggcgctctggacttctgaatgatgcttacgagctgattaaacgaatgccaatggagccaaactctggtgtatggggggctcttttcagttcttgtagggtttatggtaatattgaacttgggaaggcagttgcagagagattatttgctttagagccatctgattccagaaattttatcatgctatcaaatatgtactctgcagctggtttatggaggaatgcttcaaaggtgagggctttgatgaaggagaaaggtctcgcgagaacccccggatgcagttttattgaatatggaaataagattcatcgctttgttgtgggtgatcagtctcacctcgagtcagagaggatatatgccaagttggaagaagtgattgaaaagatccggaaggctggatttgtgtctcaaactgaatttattctacatgatgttgaagaggcagtgaaagaagatatgatcagtaagcagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

334

Amino Acids

37.24

Weight (kDa)

7.1

Isoelectric Point (pI)

39.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	92 - 141	1.3e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	94 - 142	8.5e-14	PPR repeat family
PPR	PF01535	97 - 127	2.1e-07	PPR repeat
PPR_3	PF13812	118 - 178	2.9e-07	Pentatricopeptide repeat domain
E_motif	PF20431	212 - 274	3.1e-17	E motif
Eplus_motif	PF20430	279 - 306	8.2e-06	E+ motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40410
fragaria_vesca	FvH4_2g00730
malus_domestica	MD05G1003000.v1.1 MD10G1003900.v1.1
prunus_persica	Prupe.8G006400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0251111
rosa_laevigata	RLG00000015483
rosa_multiflora	Rmu_co8188818.1_g000001 Rmu_co8231405.1_g000001 Rmu_sc0002219.1_g000009 Rmu_sc0002219.1_g000010 Rmu_sc0002219.1_g000016 Rmu_sc0002219.1_g000017 Rmu_sc0002960.1_g000013 Rmu_sc0011355.1_g000002
rosa_roxburghii	Rroxscaffold_7G00217030
rosa_rugosa	Rorug05G0500400 Rorug05G0500500
rosa_samantha	Rh6AG008600 Rh6AG008700 Rh6AG009100 Rh6BG002600 Rh6DG006400
rosa_wichuraiana	Rw6G000930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	302
AccB7I	CCANNNNNTGG	1 cut(s)	596
AccI	GTMKAC	1 cut(s)	224
AccII	CGCG	1 cut(s)	794
AccIII	TCCGGA	2 cut(s)	280, 918
AciI	CCGC	2 cut(s)	32, 35
AclWI	GGATC	4 cut(s)	34, 272, 510, 910
AcsI	RAATTY	3 cut(s)	124, 703, 947
AcuI	CTGAAG	1 cut(s)	495
AcyI	GRCGYC	1 cut(s)	153
AfaI	GTAC	2 cut(s)	94, 728
AfiI	CCNNNNNNNGG	2 cut(s)	89, 596
AflII	CTTAAG	1 cut(s)	254
AjiI	CACGTC	1 cut(s)	394
AluBI	AGCT	4 cut(s)	293, 344, 565, 737
AluI	AGCT	4 cut(s)	293, 344, 565, 737
Alw26I	GTCTC	3 cut(s)	794, 867, 942
AlwI	GGATC	4 cut(s)	34, 272, 510, 910
Ama87I	CYCGRG	1 cut(s)	869
Aor13HI	TCCGGA	2 cut(s)	280, 918
ApeKI	GCWGC	2 cut(s)	382, 734
ApoI	RAATTY	3 cut(s)	124, 703, 947
Asp700I	GAANNNNTTC	2 cut(s)	458, 951
AspA2I	CCTAGG	1 cut(s)	494
AspLEI	GCGC	1 cut(s)	537
AsuC2I	CCSGG	1 cut(s)	804
AsuHPI	GGTGA	4 cut(s)	388, 775, 857, 866
AvaI	CYCGRG	1 cut(s)	869
AvrII	CCTAGG	1 cut(s)	494
BaeI	ACNNNNGTAYC	2 cut(s)	84, 117
BanII	GRGCYC	1 cut(s)	613
BbvI	GCAGC	2 cut(s)	394, 746
BccI	CCATC	2 cut(s)	83, 697
BclI	TGATCA	3 cut(s)	388, 856, 990
BcnI	CCSGG	1 cut(s)	804
BcoDI	GTCTC	3 cut(s)	794, 867, 942
BfaI	CTAG	3 cut(s)	143, 215, 495
BfmI	CTRYAG	1 cut(s)	732
BfoI	RGCGCY	1 cut(s)	538
BfrI	CTTAAG	1 cut(s)	254
BfuAI	ACCTGC	1 cut(s)	302
BglII	AGATCT	1 cut(s)	351
BisI	GCNGC	3 cut(s)	33, 383, 735
BlnI	CCTAGG	1 cut(s)	494
BlsI	GCNGC	3 cut(s)	34, 384, 736
Bme1390I	CCNGG	1 cut(s)	804
BmeT110I	CYCGRG	1 cut(s)	869
BmgBI	CACGTC	1 cut(s)	394
BmiI	GGNNCC	1 cut(s)	588
BmrFI	CCNGG	1 cut(s)	804
BmsI	GCATC	2 cut(s)	544, 797
BplI	GAGNNNNNCTC	2 cut(s)	578, 610
BpmI	CTGGAG	1 cut(s)	93
BpuMI	CCSGG	1 cut(s)	804
BsaHI	GRCGYC	1 cut(s)	153
BsaI	GGTCTC	1 cut(s)	794
BsaJI	CCNNGG	3 cut(s)	157, 494, 802
BsaWI	WCCGGW	2 cut(s)	280, 918
Bsc4I	CCNNNNNNNGG	2 cut(s)	89, 596
Bse3DI	GCAATG	1 cut(s)	309
BseAI	TCCGGA	2 cut(s)	280, 918
BseDI	CCNNGG	3 cut(s)	157, 494, 802
BseGI	GGATG	2 cut(s)	185, 812
BseLI	CCNNNNNNNGG	2 cut(s)	89, 596
BseMI	GCAATG	1 cut(s)	309
BseXI	GCAGC	2 cut(s)	394, 746
BsgI	GTGCAG	1 cut(s)	401
Bsh1236I	CGCG	1 cut(s)	794
BsiHKCI	CYCGRG	1 cut(s)	869
BsiSI	CCGG	3 cut(s)	281, 804, 919
BslI	CCNNNNNNNGG	2 cut(s)	89, 596
BsmAI	GTCTC	3 cut(s)	794, 867, 942
BsmI	GAATGC	2 cut(s)	582, 757
Bso31I	GGTCTC	1 cut(s)	794
BsoBI	CYCGRG	1 cut(s)	869
Bsp1286I	GDGCHC	1 cut(s)	613
Bsp13I	TCCGGA	2 cut(s)	280, 918
Bsp143I	GATC	9 cut(s)	26, 277, 351, 388, 502, 523, 856, 915, 990
Bsp19I	CCATGG	1 cut(s)	157
Bsp68I	TCGCGA	1 cut(s)	794
BspACI	CCGC	2 cut(s)	32, 35
BspEI	TCCGGA	2 cut(s)	280, 918
BspFNI	CGCG	1 cut(s)	794
BspHI	TCATGA	1 cut(s)	60
BspLI	GGNNCC	1 cut(s)	588
BspMAI	CTGCAG	1 cut(s)	736
BspMI	ACCTGC	1 cut(s)	302
BspPI	GGATC	4 cut(s)	34, 272, 510, 910
BspTI	CTTAAG	1 cut(s)	254
BspTNI	GGTCTC	1 cut(s)	794
BsrDI	GCAATG	1 cut(s)	309
BssECI	CCNNGG	3 cut(s)	157, 494, 802
BssMI	GATC	9 cut(s)	26, 277, 351, 388, 502, 523, 856, 915, 990
BssNAI	GTATAC	1 cut(s)	225
BssNI	GRCGYC	1 cut(s)	153
BssT1I	CCWWGG	2 cut(s)	157, 494
Bst1107I	GTATAC	1 cut(s)	225
Bst6I	CTCTTC	1 cut(s)	963
BstACI	GRCGYC	1 cut(s)	153
BstAFI	CTTAAG	1 cut(s)	254
BstAPI	GCANNNNNTGC	2 cut(s)	308, 317
BstC8I	GCNNGC	1 cut(s)	309
BstDSI	CCRYGG	1 cut(s)	157
BstF5I	GGATG	2 cut(s)	185, 812
BstFNI	CGCG	1 cut(s)	794
BstH2I	RGCGCY	1 cut(s)	538
BstHHI	GCGC	1 cut(s)	537
BstKTI	GATC	9 cut(s)	29, 280, 354, 391, 505, 526, 859, 918, 993
BstMAI	GTCTC	3 cut(s)	794, 867, 942
BstMBI	GATC	9 cut(s)	26, 277, 351, 388, 502, 523, 856, 915, 990
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 299, 308, 317, 586
BstSCI	CCNGG	1 cut(s)	802
BstSFI	CTRYAG	1 cut(s)	732
BstUI	CGCG	1 cut(s)	794
BstV1I	GCAGC	2 cut(s)	394, 746
BstX2I	RGATCY	3 cut(s)	26, 351, 915
BstYI	RGATCY	3 cut(s)	26, 351, 915
BstZ17I	GTATAC	1 cut(s)	225
BtgI	CCRYGG	1 cut(s)	157
BtgZI	GCGATG	1 cut(s)	824
BtrI	CACGTC	1 cut(s)	394
BtsCI	GGATG	2 cut(s)	185, 812
BtsI	GCAGTG	1 cut(s)	981
BtsIMutI	CAGTG	1 cut(s)	981
BtuMI	TCGCGA	1 cut(s)	794
BveI	ACCTGC	1 cut(s)	302
Cac8I	GCNNGC	1 cut(s)	309
CciI	TCATGA	1 cut(s)	60
CfoI	GCGC	1 cut(s)	537
CseI	GACGC	1 cut(s)	142
Csp6I	GTAC	2 cut(s)	93, 727
CviAII	CATG	8 cut(s)	61, 158, 326, 364, 513, 517, 712, 959
CviQI	GTAC	2 cut(s)	93, 727
DpnI	GATC	9 cut(s)	28, 279, 353, 390, 504, 525, 858, 917, 992
DpnII	GATC	9 cut(s)	26, 277, 351, 388, 502, 523, 856, 915, 990
Eam1104I	CTCTTC	1 cut(s)	963
EarI	CTCTTC	1 cut(s)	963
EciI	GGCGGA	1 cut(s)	50
Eco130I	CCWWGG	2 cut(s)	157, 494
Eco24I	GRGCYC	1 cut(s)	613
Eco31I	GGTCTC	1 cut(s)	794
Eco57I	CTGAAG	1 cut(s)	495
Eco88I	CYCGRG	1 cut(s)	869
EcoT14I	CCWWGG	2 cut(s)	157, 494
EcoT22I	ATGCAT	1 cut(s)	518
EcoT38I	GRGCYC	1 cut(s)	613
ErhI	CCWWGG	2 cut(s)	157, 494
FaeI	CATG	8 cut(s)	64, 161, 329, 367, 516, 520, 715, 962
FatI	CATG	8 cut(s)	60, 157, 325, 363, 512, 516, 711, 958
FbaI	TGATCA	3 cut(s)	388, 856, 990
FblI	GTMKAC	1 cut(s)	224
Fnu4HI	GCNGC	3 cut(s)	33, 383, 735
FokI	GGATG	2 cut(s)	192, 819
FriOI	GRGCYC	1 cut(s)	613
Fsp4HI	GCNGC	3 cut(s)	33, 383, 735
FspBI	CTAG	3 cut(s)	143, 215, 495
GlaI	GCGC	1 cut(s)	536
GluI	GCNGC	3 cut(s)	33, 383, 735
GsuI	CTGGAG	1 cut(s)	93
HaeII	RGCGCY	1 cut(s)	538
HapII	CCGG	3 cut(s)	281, 804, 919
HgaI	GACGC	1 cut(s)	142
HhaI	GCGC	1 cut(s)	537
Hin1I	GRCGYC	1 cut(s)	153
Hin1II	CATG	8 cut(s)	64, 161, 329, 367, 516, 520, 715, 962
Hin6I	GCGC	1 cut(s)	535
HinP1I	GCGC	1 cut(s)	535
HinfI	GANTC	4 cut(s)	139, 695, 835, 872
HpaII	CCGG	3 cut(s)	281, 804, 919
HphI	GGTGA	4 cut(s)	388, 775, 857, 866
Hpy166II	GTNNAC	1 cut(s)	225
Hpy188I	TCNGA	5 cut(s)	197, 475, 549, 694, 877
Hpy188III	TCNNGA	8 cut(s)	61, 215, 281, 432, 540, 699, 793, 919
Hpy8I	GTNNAC	1 cut(s)	225
HpyAV	CCTTC	5 cut(s)	60, 409, 649, 772, 916
HpyCH4IV	ACGT	1 cut(s)	393
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 299, 308, 317, 586
HpySE526I	ACGT	1 cut(s)	393
Hsp92I	GRCGYC	1 cut(s)	153
Hsp92II	CATG	8 cut(s)	64, 161, 329, 367, 516, 520, 715, 962
HspAI	GCGC	1 cut(s)	535
Kpn2I	TCCGGA	2 cut(s)	280, 918
Ksp22I	TGATCA	3 cut(s)	388, 856, 990
Kzo9I	GATC	9 cut(s)	26, 277, 351, 388, 502, 523, 856, 915, 990
LmnI	GCTCC	1 cut(s)	586
Lsp1109I	GCAGC	2 cut(s)	394, 746
LweI	GCATC	2 cut(s)	544, 797
MaeI	CTAG	3 cut(s)	143, 215, 495
MaeII	ACGT	1 cut(s)	393
MaeIII	GTNAC	1 cut(s)	394
MalI	GATC	9 cut(s)	28, 279, 353, 390, 504, 525, 858, 917, 992
MboI	GATC	9 cut(s)	26, 277, 351, 388, 502, 523, 856, 915, 990
MboII	GAAGA	4 cut(s)	518, 911, 980, 995
MflI	RGATCY	3 cut(s)	26, 351, 915
MhlI	GDGCHC	1 cut(s)	613
MluCI	AATT	9 cut(s)	9, 46, 124, 165, 273, 438, 454, 703, 947
MlyI	GAGTC	1 cut(s)	881
MmeI	TCCRAC	2 cut(s)	480, 876
MnlI	CCTC	8 cut(s)	31, 262, 444, 741, 759, 873, 878, 964
Mph1103I	ATGCAT	1 cut(s)	518
MroI	TCCGGA	2 cut(s)	280, 918
MroXI	GAANNNNTTC	2 cut(s)	458, 951
MseI	TTAA	6 cut(s)	54, 164, 255, 413, 441, 570
MslI	CAYNNNNRTG	1 cut(s)	330
MspA1I	CMGCKG	1 cut(s)	737
MspCI	CTTAAG	1 cut(s)	254
MspI	CCGG	3 cut(s)	281, 804, 919
MspR9I	CCNGG	1 cut(s)	804
Mva1269I	GAATGC	2 cut(s)	582, 757
MvnI	CGCG	1 cut(s)	794
MwoI	GCNNNNNNNGC	5 cut(s)	14, 299, 308, 317, 586
NciI	CCSGG	1 cut(s)	804
NcoI	CCATGG	1 cut(s)	157
NdeII	GATC	9 cut(s)	26, 277, 351, 388, 502, 523, 856, 915, 990
NlaIII	CATG	8 cut(s)	64, 161, 329, 367, 516, 520, 715, 962
NlaIV	GGNNCC	1 cut(s)	588
NmuCI	GTSAC	1 cut(s)	394
NruI	TCGCGA	1 cut(s)	794
NsiI	ATGCAT	1 cut(s)	518
PaeR7I	CTCGAG	1 cut(s)	869
PagI	TCATGA	1 cut(s)	60
PctI	GAATGC	2 cut(s)	582, 757
PdmI	GAANNNNTTC	2 cut(s)	458, 951
PfeI	GAWTC	3 cut(s)	139, 695, 835
PflMI	CCANNNNNTGG	1 cut(s)	596
PkrI	GCNGC	3 cut(s)	34, 384, 736
PleI	GAGTC	1 cut(s)	880
PpsI	GAGTC	1 cut(s)	880
PspN4I	GGNNCC	1 cut(s)	588
PspXI	VCTCGAGB	1 cut(s)	869
PstI	CTGCAG	1 cut(s)	736
PsuI	RGATCY	3 cut(s)	26, 351, 915
PvuII	CAGCTG	1 cut(s)	737
RruI	TCGCGA	1 cut(s)	794
RsaI	GTAC	2 cut(s)	94, 728
RsaNI	GTAC	2 cut(s)	93, 727
RseI	CAYNNNNRTG	1 cut(s)	330
SaqAI	TTAA	6 cut(s)	54, 164, 255, 413, 441, 570
SatI	GCNGC	3 cut(s)	33, 383, 735
Sau3AI	GATC	9 cut(s)	26, 277, 351, 388, 502, 523, 856, 915, 990
SchI	GAGTC	1 cut(s)	881
ScrFI	CCNGG	1 cut(s)	804
SduI	GDGCHC	1 cut(s)	613
SfaNI	GCATC	2 cut(s)	544, 797
SfcI	CTRYAG	1 cut(s)	732
Sfr274I	CTCGAG	1 cut(s)	869
SlaI	CTCGAG	1 cut(s)	869
SmiMI	CAYNNNNRTG	1 cut(s)	330
SmlI	CTYRAG	2 cut(s)	254, 869
SmoI	CTYRAG	2 cut(s)	254, 869
Sse9I	AATT	9 cut(s)	9, 46, 124, 165, 273, 438, 454, 703, 947
SsiI	CCGC	2 cut(s)	32, 35
SspI	AATATT	1 cut(s)	643
SspMI	CTAG	3 cut(s)	143, 215, 495
StyD4I	CCNGG	1 cut(s)	802
StyI	CCWWGG	2 cut(s)	157, 494
TaiI	ACGT	1 cut(s)	396
TaqI	TCGA	1 cut(s)	870
TasI	AATT	9 cut(s)	9, 46, 124, 165, 273, 438, 454, 703, 947
TatI	WGTACW	1 cut(s)	726
TauI	GCSGC	1 cut(s)	35
TfiI	GAWTC	3 cut(s)	139, 695, 835
Tru1I	TTAA	6 cut(s)	54, 164, 255, 413, 441, 570
Tru9I	TTAA	6 cut(s)	54, 164, 255, 413, 441, 570
TscAI	CASTG	1 cut(s)	981
TseFI	GTSAC	1 cut(s)	394
TseI	GCWGC	2 cut(s)	382, 734
Tsp45I	GTSAC	1 cut(s)	394
TspDTI	ATGAA	3 cut(s)	501, 791, 827
TspRI	CASTG	1 cut(s)	981
Van91I	CCANNNNNTGG	1 cut(s)	596
Vha464I	CTTAAG	1 cut(s)	254
XapI	RAATTY	3 cut(s)	124, 703, 947
XbaI	TCTAGA	1 cut(s)	214
XhoI	CTCGAG	1 cut(s)	869
XmaJI	CCTAGG	1 cut(s)	494
XmiI	GTMKAC	1 cut(s)	224
XmnI	GAANNNNTTC	2 cut(s)	458, 951
XspI	CTAG	3 cut(s)	143, 215, 495
Zsp2I	ATGCAT	1 cut(s)	518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.