Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002219.1

Orthogroup ID

OG0008101

Physical Location & Seq

Genomic Coordinates Reverse (-)

57391 .. 58544

Gene Structure 1154 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

atgggctttgctgaagatgcactgaagctgtttgatgaaatgcccaacaaggacttggtctcctggaattctttgatttctgggttttcgcgaagagggtatgtggataaatgcttgagtgcgtttcttaggatgaagtttgaaatgggaaaagaacccaatgaggttacgcttatatctgtagtttcagcttgtgctatcaggggagctgttgatgaaggcatgtacattcatggatttgcactgaaattgggtgtgctgtgggaaccaaagcttgttaattctctgattaatctgtatggaaagttgggctatttggatgcagttttcaaggaggtaattgatccggataaagtagcttggactgcaatgcttgcaggttatgctacgcatgggtatggacgagaagctatggagatctttgaaagcatagttaggaaaggtgtgcagcctgatcacgtcaccttcactcacttgttaagtgcttgtagccattcaggactaattaaggaagggaggaattacttcaacattatgtctgaagtttatggagtagagcctaggttagatcactattcatgcatggttgatcttctgggtcgctctggacttctgaatgatgcttacgagctgattaaacgaatgccaatggagccaaactctggtctatggggggctcttttcagttcttgtagggtttatggtaatattgaacttgggaaggcagttgcagagggattatttgctttagagccatctgattccagaaattttatcatgctatcaaatatgtactctgcagctggtttatggagggatgcttcaaaggttagggctttgatgaaggagaaaggtctcgcgagaacccccggatgcagttgtattgaatatggaaataaaattcatcgctttgttgtgggtgatcagtctcaccccgagtcagataggatatatgccaagttggaagaagtgattgaaaagatccggaaggctggatttgtgtctcaaactgaattgattctacatgatgttgaagaggcagtgaactaccaaacgaaaagggtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

355

Amino Acids

39.74

Weight (kDa)

6.18

Isoelectric Point (pI)

40.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	18 - 66	3.7e-07	PPR repeat family
PPR	PF01535	20 - 46	1.3e-06	PPR repeat
PPR_2	PF13041	116 - 164	5.2e-12	PPR repeat family
PPR	PF01535	119 - 149	6.8e-06	PPR repeat
PPR_3	PF13812	140 - 200	3.3e-06	Pentatricopeptide repeat domain
E_motif	PF20431	234 - 296	6.4e-17	E motif
Eplus_motif	PF20430	301 - 328	1.1e-09	E+ motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40410
fragaria_vesca	FvH4_2g00730
malus_domestica	MD05G1003000.v1.1 MD10G1003900.v1.1
prunus_persica	Prupe.8G006400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0251111
rosa_laevigata	RLG00000015483
rosa_multiflora	Rmu_co8188818.1_g000001 Rmu_co8231405.1_g000001 Rmu_sc0002219.1_g000009 Rmu_sc0002219.1_g000010 Rmu_sc0002219.1_g000016 Rmu_sc0002219.1_g000017 Rmu_sc0002960.1_g000013 Rmu_sc0011355.1_g000002
rosa_roxburghii	Rroxscaffold_7G00217030
rosa_rugosa	Rorug05G0500400 Rorug05G0500500
rosa_samantha	Rh6AG008600 Rh6AG008700 Rh6AG009100 Rh6BG002600 Rh6DG006400
rosa_wichuraiana	Rw6G000930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	368
AccB7I	CCANNNNNTGG	1 cut(s)	662
AccII	CGCG	2 cut(s)	91, 860
AccIII	TCCGGA	2 cut(s)	346, 984
AclWI	GGATC	2 cut(s)	338, 976
AcsI	RAATTY	3 cut(s)	67, 769, 900
AcuI	CTGAAG	3 cut(s)	33, 44, 561
AfaI	GTAC	2 cut(s)	227, 794
AfiI	CCNNNNNNNGG	1 cut(s)	662
AgsI	TTSAA	9 cut(s)	143, 331, 425, 529, 713, 825, 887, 977, 1034
AjiI	CACGTC	1 cut(s)	460
AjnI	CCWGG	1 cut(s)	62
AluBI	AGCT	8 cut(s)	28, 191, 209, 274, 359, 410, 631, 803
AluI	AGCT	8 cut(s)	28, 191, 209, 274, 359, 410, 631, 803
Alw26I	GTCTC	4 cut(s)	64, 860, 933, 1008
AlwI	GGATC	2 cut(s)	338, 976
Ama87I	CYCGRG	1 cut(s)	935
Aor13HI	TCCGGA	2 cut(s)	346, 984
ApeKI	GCWGC	2 cut(s)	448, 800
ApoI	RAATTY	3 cut(s)	67, 769, 900
AseI	ATTAAT	1 cut(s)	291
Asp700I	GAANNNNTTC	2 cut(s)	524, 1017
AspA2I	CCTAGG	1 cut(s)	560
AsuC2I	CCSGG	1 cut(s)	870
AsuHPI	GGTGA	3 cut(s)	454, 923, 932
AvaI	CYCGRG	1 cut(s)	935
AvrII	CCTAGG	1 cut(s)	560
BanII	GRGCYC	1 cut(s)	679
BbvI	GCAGC	2 cut(s)	460, 812
BccI	CCATC	1 cut(s)	763
BciT130I	CCWGG	1 cut(s)	64
BclI	TGATCA	2 cut(s)	454, 922
BcnI	CCSGG	1 cut(s)	870
BcoDI	GTCTC	4 cut(s)	64, 860, 933, 1008
BfaI	CTAG	1 cut(s)	561
BfmI	CTRYAG	2 cut(s)	180, 798
BfuAI	ACCTGC	1 cut(s)	368
BglII	AGATCT	1 cut(s)	417
BisI	GCNGC	2 cut(s)	449, 801
BlnI	CCTAGG	1 cut(s)	560
BlsI	GCNGC	2 cut(s)	450, 802
Bme1390I	CCNGG	2 cut(s)	64, 870
BmeT110I	CYCGRG	1 cut(s)	935
BmgBI	CACGTC	1 cut(s)	460
BmiI	GGNNCC	2 cut(s)	267, 654
BmrFI	CCNGG	2 cut(s)	64, 870
BmsI	GCATC	5 cut(s)	7, 310, 610, 808, 863
BplI	GAGNNNNNCTC	2 cut(s)	644, 676
BpuEI	CTTGAG	1 cut(s)	136
BpuMI	CCSGG	1 cut(s)	870
BsaI	GGTCTC	2 cut(s)	64, 860
BsaJI	CCNNGG	2 cut(s)	560, 868
BsaWI	WCCGGW	2 cut(s)	346, 984
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
Bsc4I	CCNNNNNNNGG	1 cut(s)	662
Bse3DI	GCAATG	1 cut(s)	375
BseAI	TCCGGA	2 cut(s)	346, 984
BseBI	CCWGG	1 cut(s)	64
BseDI	CCNNGG	2 cut(s)	560, 868
BseGI	GGATG	4 cut(s)	138, 325, 823, 878
BseLI	CCNNNNNNNGG	1 cut(s)	662
BseMI	GCAATG	1 cut(s)	375
BseXI	GCAGC	2 cut(s)	460, 812
BsgI	GTGCAG	1 cut(s)	467
Bsh1236I	CGCG	2 cut(s)	91, 860
BsiHKCI	CYCGRG	1 cut(s)	935
BsiSI	CCGG	3 cut(s)	347, 870, 985
BslI	CCNNNNNNNGG	1 cut(s)	662
BsmAI	GTCTC	4 cut(s)	64, 860, 933, 1008
BsmI	GAATGC	1 cut(s)	648
Bso31I	GGTCTC	2 cut(s)	64, 860
BsoBI	CYCGRG	1 cut(s)	935
Bsp1286I	GDGCHC	1 cut(s)	679
Bsp13I	TCCGGA	2 cut(s)	346, 984
Bsp1407I	TGTACA	1 cut(s)	225
Bsp143I	GATC	7 cut(s)	343, 417, 454, 568, 589, 922, 981
Bsp68I	TCGCGA	2 cut(s)	91, 860
BspEI	TCCGGA	2 cut(s)	346, 984
BspFNI	CGCG	2 cut(s)	91, 860
BspLI	GGNNCC	2 cut(s)	267, 654
BspMAI	CTGCAG	1 cut(s)	802
BspMI	ACCTGC	1 cut(s)	368
BspPI	GGATC	2 cut(s)	338, 976
BspTNI	GGTCTC	2 cut(s)	64, 860
BsrDI	GCAATG	1 cut(s)	375
BsrGI	TGTACA	1 cut(s)	225
BssECI	CCNNGG	2 cut(s)	560, 868
BssMI	GATC	7 cut(s)	343, 417, 454, 568, 589, 922, 981
BssT1I	CCWWGG	1 cut(s)	560
Bst2UI	CCWGG	1 cut(s)	64
Bst6I	CTCTTC	2 cut(s)	88, 1029
BstAPI	GCANNNNNTGC	2 cut(s)	374, 383
BstAUI	TGTACA	1 cut(s)	225
BstC8I	GCNNGC	1 cut(s)	375
BstDEI	CTNAG	1 cut(s)	128
BstF5I	GGATG	4 cut(s)	138, 325, 823, 878
BstFNI	CGCG	2 cut(s)	91, 860
BstKTI	GATC	7 cut(s)	346, 420, 457, 571, 592, 925, 984
BstMAI	GTCTC	4 cut(s)	64, 860, 933, 1008
BstMBI	GATC	7 cut(s)	343, 417, 454, 568, 589, 922, 981
BstMWI	GCNNNNNNNGC	5 cut(s)	17, 365, 374, 383, 652
BstNI	CCWGG	1 cut(s)	64
BstNSI	RCATGY	1 cut(s)	226
BstSCI	CCNGG	2 cut(s)	62, 868
BstSFI	CTRYAG	2 cut(s)	180, 798
BstUI	CGCG	2 cut(s)	91, 860
BstV1I	GCAGC	2 cut(s)	460, 812
BstX2I	RGATCY	2 cut(s)	417, 981
BstYI	RGATCY	2 cut(s)	417, 981
BtgZI	GCGATG	1 cut(s)	890
BtrI	CACGTC	1 cut(s)	460
BtsCI	GGATG	4 cut(s)	138, 325, 823, 878
BtsI	GCAGTG	1 cut(s)	1047
BtsIMutI	CAGTG	3 cut(s)	20, 242, 1047
BtuMI	TCGCGA	2 cut(s)	91, 860
BveI	ACCTGC	1 cut(s)	368
Cac8I	GCNNGC	1 cut(s)	375
Csp6I	GTAC	2 cut(s)	226, 793
CviAII	CATG	7 cut(s)	223, 233, 392, 579, 583, 778, 1025
CviQI	GTAC	2 cut(s)	226, 793
DdeI	CTNAG	1 cut(s)	128
DpnI	GATC	7 cut(s)	345, 419, 456, 570, 591, 924, 983
DpnII	GATC	7 cut(s)	343, 417, 454, 568, 589, 922, 981
Eam1104I	CTCTTC	2 cut(s)	88, 1029
EarI	CTCTTC	2 cut(s)	88, 1029
Eco130I	CCWWGG	1 cut(s)	560
Eco24I	GRGCYC	1 cut(s)	679
Eco31I	GGTCTC	2 cut(s)	64, 860
Eco57I	CTGAAG	3 cut(s)	33, 44, 561
Eco88I	CYCGRG	1 cut(s)	935
EcoRI	GAATTC	1 cut(s)	67
EcoRII	CCWGG	1 cut(s)	62
EcoT14I	CCWWGG	1 cut(s)	560
EcoT22I	ATGCAT	1 cut(s)	584
EcoT38I	GRGCYC	1 cut(s)	679
ErhI	CCWWGG	1 cut(s)	560
FaeI	CATG	7 cut(s)	226, 236, 395, 582, 586, 781, 1028
FatI	CATG	7 cut(s)	222, 232, 391, 578, 582, 777, 1024
FbaI	TGATCA	2 cut(s)	454, 922
Fnu4HI	GCNGC	2 cut(s)	449, 801
FokI	GGATG	4 cut(s)	145, 332, 830, 885
FriOI	GRGCYC	1 cut(s)	679
Fsp4HI	GCNGC	2 cut(s)	449, 801
FspBI	CTAG	1 cut(s)	561
GluI	GCNGC	2 cut(s)	449, 801
HapII	CCGG	3 cut(s)	347, 870, 985
Hin1II	CATG	7 cut(s)	226, 236, 395, 582, 586, 781, 1028
HindIII	AAGCTT	1 cut(s)	272
HinfI	GANTC	3 cut(s)	761, 938, 1018
HpaII	CCGG	3 cut(s)	347, 870, 985
HphI	GGTGA	3 cut(s)	454, 923, 932
Hpy166II	GTNNAC	1 cut(s)	1045
Hpy188I	TCNGA	5 cut(s)	288, 541, 615, 760, 943
Hpy188III	TCNNGA	7 cut(s)	90, 347, 498, 606, 765, 859, 985
Hpy8I	GTNNAC	1 cut(s)	1045
HpyAV	CCTTC	6 cut(s)	212, 475, 506, 715, 838, 982
HpyCH4IV	ACGT	1 cut(s)	459
HpyF10VI	GCNNNNNNNGC	5 cut(s)	17, 365, 374, 383, 652
HpyF3I	CTNAG	1 cut(s)	128
HpySE526I	ACGT	1 cut(s)	459
Hsp92II	CATG	7 cut(s)	226, 236, 395, 582, 586, 781, 1028
Kpn2I	TCCGGA	2 cut(s)	346, 984
Ksp22I	TGATCA	2 cut(s)	454, 922
Kzo9I	GATC	7 cut(s)	343, 417, 454, 568, 589, 922, 981
LmnI	GCTCC	2 cut(s)	206, 652
Lsp1109I	GCAGC	2 cut(s)	460, 812
LweI	GCATC	5 cut(s)	7, 310, 610, 808, 863
MaeI	CTAG	1 cut(s)	561
MaeII	ACGT	1 cut(s)	459
MaeIII	GTNAC	2 cut(s)	166, 460
MalI	GATC	7 cut(s)	345, 419, 456, 570, 591, 924, 983
MboI	GATC	7 cut(s)	343, 417, 454, 568, 589, 922, 981
MboII	GAAGA	5 cut(s)	26, 105, 584, 977, 1046
MflI	RGATCY	2 cut(s)	417, 981
MhlI	GDGCHC	1 cut(s)	679
MluCI	AATT	9 cut(s)	67, 248, 280, 339, 504, 520, 769, 900, 1013
MlyI	GAGTC	1 cut(s)	947
MmeI	TCCRAC	1 cut(s)	942
MnlI	CCTC	7 cut(s)	89, 157, 328, 510, 727, 807, 1030
Mph1103I	ATGCAT	1 cut(s)	584
MroI	TCCGGA	2 cut(s)	346, 984
MroXI	GAANNNNTTC	2 cut(s)	524, 1017
MseI	TTAA	5 cut(s)	279, 291, 479, 507, 636
MslI	CAYNNNNRTG	1 cut(s)	396
MspA1I	CMGCKG	1 cut(s)	803
MspI	CCGG	3 cut(s)	347, 870, 985
MspR9I	CCNGG	2 cut(s)	64, 870
Mva1269I	GAATGC	1 cut(s)	648
MvaI	CCWGG	1 cut(s)	64
MvnI	CGCG	2 cut(s)	91, 860
MwoI	GCNNNNNNNGC	5 cut(s)	17, 365, 374, 383, 652
NciI	CCSGG	1 cut(s)	870
NdeII	GATC	7 cut(s)	343, 417, 454, 568, 589, 922, 981
NlaIII	CATG	7 cut(s)	226, 236, 395, 582, 586, 781, 1028
NlaIV	GGNNCC	2 cut(s)	267, 654
NmuCI	GTSAC	1 cut(s)	460
NruI	TCGCGA	2 cut(s)	91, 860
NsiI	ATGCAT	1 cut(s)	584
NspI	RCATGY	1 cut(s)	226
PctI	GAATGC	1 cut(s)	648
PdmI	GAANNNNTTC	2 cut(s)	524, 1017
PfeI	GAWTC	2 cut(s)	761, 1018
PflFI	GACNNNGTC	1 cut(s)	56
PflMI	CCANNNNNTGG	1 cut(s)	662
PfoI	TCCNGGA	1 cut(s)	62
PkrI	GCNGC	2 cut(s)	450, 802
PleI	GAGTC	1 cut(s)	946
PpsI	GAGTC	1 cut(s)	946
PshBI	ATTAAT	1 cut(s)	291
Psp6I	CCWGG	1 cut(s)	62
PspGI	CCWGG	1 cut(s)	62
PspN4I	GGNNCC	2 cut(s)	267, 654
PstI	CTGCAG	1 cut(s)	802
PsuI	RGATCY	2 cut(s)	417, 981
PsyI	GACNNNGTC	1 cut(s)	56
PvuII	CAGCTG	1 cut(s)	803
RruI	TCGCGA	2 cut(s)	91, 860
RsaI	GTAC	2 cut(s)	227, 794
RsaNI	GTAC	2 cut(s)	226, 793
RseI	CAYNNNNRTG	1 cut(s)	396
SaqAI	TTAA	5 cut(s)	279, 291, 479, 507, 636
SatI	GCNGC	2 cut(s)	449, 801
Sau3AI	GATC	7 cut(s)	343, 417, 454, 568, 589, 922, 981
SchI	GAGTC	1 cut(s)	947
ScrFI	CCNGG	2 cut(s)	64, 870
SduI	GDGCHC	1 cut(s)	679
SfaNI	GCATC	5 cut(s)	7, 310, 610, 808, 863
SfcI	CTRYAG	2 cut(s)	180, 798
SmiMI	CAYNNNNRTG	1 cut(s)	396
SmlI	CTYRAG	1 cut(s)	115
SmoI	CTYRAG	1 cut(s)	115
Sse9I	AATT	9 cut(s)	67, 248, 280, 339, 504, 520, 769, 900, 1013
SspI	AATATT	1 cut(s)	709
SspMI	CTAG	1 cut(s)	561
StyD4I	CCNGG	2 cut(s)	62, 868
StyI	CCWWGG	1 cut(s)	560
TaiI	ACGT	1 cut(s)	462
TasI	AATT	9 cut(s)	67, 248, 280, 339, 504, 520, 769, 900, 1013
TatI	WGTACW	2 cut(s)	225, 792
TfiI	GAWTC	2 cut(s)	761, 1018
Tru1I	TTAA	5 cut(s)	279, 291, 479, 507, 636
Tru9I	TTAA	5 cut(s)	279, 291, 479, 507, 636
TscAI	CASTG	3 cut(s)	27, 249, 1047
TseFI	GTSAC	1 cut(s)	460
TseI	GCWGC	2 cut(s)	448, 800
Tsp45I	GTSAC	1 cut(s)	460
TspDTI	ATGAA	7 cut(s)	51, 149, 221, 231, 567, 857, 893
TspRI	CASTG	3 cut(s)	27, 249, 1047
Tth111I	GACNNNGTC	1 cut(s)	56
Van91I	CCANNNNNTGG	1 cut(s)	662
VspI	ATTAAT	1 cut(s)	291
XapI	RAATTY	3 cut(s)	67, 769, 900
XceI	RCATGY	1 cut(s)	226
XcmI	CCANNNNNNNNNTGG	1 cut(s)	52
XmaJI	CCTAGG	1 cut(s)	560
XmnI	GAANNNNTTC	2 cut(s)	524, 1017
XspI	CTAG	1 cut(s)	561
Zsp2I	ATGCAT	1 cut(s)	584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.