Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002489.1

Orthogroup ID

OG0016984

Physical Location & Seq

Genomic Coordinates Reverse (-)

42758 .. 44200

Gene Structure 1443 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

atgaccaaactgatccggtggccgcccactcgtcctcccactgtcgatccccttctgcgcatgctcgagatcgcatggcctggcccacttggtggagaagcgggagaatatgttgacagagggggaatccatgtcgatgaccactgtttggggttggccttcttccgcttatttcattcaagtggtggagacttcgttgcagaagtttatgtggcccgatgtgtcgatgaaggtgacggagtggtagctatggtgcagagtgatggaggagctctttatggtgatggcccaatgctactactcgaggagggagtccatgaagtggaggcggccggtgagcttggggtggatgatgtcgctgatggagccgaagataaggtggatgaagataaggatgtggtttcatggaatggtatagttactgggtattctcagattgttagatttgagaatgctattggtttatttgaaaacataagggaggagaagattgagttacatgttgtcacttggggtgctatgatttcagggcatgcacaaaggggacatggttaccaagcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

187

Amino Acids

20.25

Weight (kDa)

4.45

Isoelectric Point (pI)

17.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	131 - 179	2.9e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016984)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0164601
rosa_laevigata	RLG00000016816
rosa_multiflora	Rmu_sc0001557.1_g000008 Rmu_sc0002489.1_g000013 Rmu_sc0002532.1_g000028 Rmu_sc0003710.1_g000006
rosa_roxburghii	Rroxscaffold_2G00087760 Rroxscaffold_4G00327750 Rroxscaffold_7G00160260
rosa_samantha	Rh3AG292100 Rh3BG329400 Rh3CG326500 Rh3DG325400 Rh7AG458700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	59
AccB7I	CCANNNNNTGG	3 cut(s)	92, 148, 322
AciI	CCGC	4 cut(s)	23, 101, 166, 329
AclWI	GGATC	2 cut(s)	7, 41
AcoI	YGGCCR	2 cut(s)	20, 330
AdeI	CACNNNGTG	1 cut(s)	92
AfiI	CCNNNNNNNGG	3 cut(s)	92, 148, 322
AflIII	ACRYGT	1 cut(s)	499
AgsI	TTSAA	2 cut(s)	180, 470
AjnI	CCWGG	1 cut(s)	79
AluBI	AGCT	3 cut(s)	248, 272, 340
AluI	AGCT	3 cut(s)	248, 272, 340
Alw21I	GWGCWC	1 cut(s)	274
Alw26I	GTCTC	1 cut(s)	183
AlwI	GGATC	2 cut(s)	7, 41
Ama87I	CYCGRG	2 cut(s)	65, 302
AoxI	GGCC	7 cut(s)	20, 77, 82, 156, 213, 286, 330
AspLEI	GCGC	1 cut(s)	60
AspS9I	GGNCC	3 cut(s)	83, 214, 287
AsuHPI	GGTGA	3 cut(s)	245, 293, 347
AvaI	CYCGRG	2 cut(s)	65, 302
BanII	GRGCYC	1 cut(s)	274
Bbv12I	GWGCWC	1 cut(s)	274
BccI	CCATC	3 cut(s)	257, 278, 356
BciT130I	CCWGG	1 cut(s)	81
BcoDI	GTCTC	1 cut(s)	183
BisI	GCNGC	2 cut(s)	23, 330
BlsI	GCNGC	2 cut(s)	24, 331
Bme1390I	CCNGG	1 cut(s)	81
BmeT110I	CYCGRG	2 cut(s)	65, 302
BmgT120I	GGNCC	3 cut(s)	83, 214, 287
BmiI	GGNNCC	1 cut(s)	367
BmrFI	CCNGG	1 cut(s)	81
BmrI	ACTGGG	1 cut(s)	432
BmuI	ACTGGG	1 cut(s)	432
BsaWI	WCCGGW	1 cut(s)	15
BsaXI	ACNNNNNCTCC	6 cut(s)	19, 49, 96, 126, 180, 210
Bsc4I	CCNNNNNNNGG	3 cut(s)	92, 148, 322
Bse118I	RCCGGY	1 cut(s)	332
Bse1I	ACTGG	1 cut(s)	427
BseBI	CCWGG	1 cut(s)	81
BseGI	GGATG	3 cut(s)	355, 388, 400
BseLI	CCNNNNNNNGG	3 cut(s)	92, 148, 322
BseMII	CTCAG	1 cut(s)	446
BseNI	ACTGG	1 cut(s)	427
BseRI	GAGGAG	3 cut(s)	282, 320, 497
BseX3I	CGGCCG	1 cut(s)	330
BsgI	GTGCAG	1 cut(s)	275
Bsh1285I	CGRYCG	1 cut(s)	333
BshFI	GGCC	7 cut(s)	22, 79, 84, 158, 215, 288, 332
BsiEI	CGRYCG	1 cut(s)	333
BsiHKAI	GWGCWC	1 cut(s)	274
BsiHKCI	CYCGRG	2 cut(s)	65, 302
BsiSI	CCGG	2 cut(s)	16, 333
BslFI	GGGAC	1 cut(s)	558
BslI	CCNNNNNNNGG	3 cut(s)	92, 148, 322
BsmAI	GTCTC	1 cut(s)	183
BsmFI	GGGAC	1 cut(s)	558
BsmI	GAATGC	1 cut(s)	457
BsnI	GGCC	7 cut(s)	22, 79, 84, 158, 215, 288, 332
BsoBI	CYCGRG	2 cut(s)	65, 302
Bsp1286I	GDGCHC	1 cut(s)	274
Bsp143I	GATC	3 cut(s)	12, 46, 69
BspACI	CCGC	4 cut(s)	23, 101, 166, 329
BspANI	GGCC	7 cut(s)	22, 79, 84, 158, 215, 288, 332
BspCNI	CTCAG	1 cut(s)	445
BspLI	GGNNCC	1 cut(s)	367
BspPI	GGATC	2 cut(s)	7, 41
BsrFI	RCCGGY	1 cut(s)	332
BsrI	ACTGG	1 cut(s)	427
BssAI	RCCGGY	1 cut(s)	332
BssMI	GATC	3 cut(s)	12, 46, 69
Bst2UI	CCWGG	1 cut(s)	81
Bst4CI	ACNGT	2 cut(s)	43, 146
BstC8I	GCNNGC	2 cut(s)	62, 534
BstDEI	CTNAG	1 cut(s)	432
BstEII	GGTNACC	1 cut(s)	551
BstF5I	GGATG	3 cut(s)	355, 388, 400
BstHHI	GCGC	1 cut(s)	60
BstKTI	GATC	3 cut(s)	15, 49, 72
BstMAI	GTCTC	1 cut(s)	183
BstMBI	GATC	3 cut(s)	12, 46, 69
BstMCI	CGRYCG	1 cut(s)	333
BstMWI	GCNNNNNNNGC	1 cut(s)	365
BstNI	CCWGG	1 cut(s)	81
BstNSI	RCATGY	3 cut(s)	64, 503, 536
BstPI	GGTNACC	1 cut(s)	551
BstSCI	CCNGG	1 cut(s)	79
BstZI	CGGCCG	1 cut(s)	330
BsuRI	GGCC	7 cut(s)	22, 79, 84, 158, 215, 288, 332
BtsCI	GGATG	3 cut(s)	355, 388, 400
BtsIMutI	CAGTG	2 cut(s)	39, 142
Cac8I	GCNNGC	2 cut(s)	62, 534
CfoI	GCGC	1 cut(s)	60
Cfr10I	RCCGGY	1 cut(s)	332
Cfr13I	GGNCC	3 cut(s)	83, 214, 287
CviAII	CATG	8 cut(s)	61, 75, 131, 317, 405, 500, 533, 548
DdeI	CTNAG	1 cut(s)	432
DpnI	GATC	3 cut(s)	14, 48, 71
DpnII	GATC	3 cut(s)	12, 46, 69
DraIII	CACNNNGTG	1 cut(s)	92
EaeI	YGGCCR	2 cut(s)	20, 330
EagI	CGGCCG	1 cut(s)	330
Ecl136II	GAGCTC	1 cut(s)	272
EclXI	CGGCCG	1 cut(s)	330
Eco24I	GRGCYC	1 cut(s)	274
Eco52I	CGGCCG	1 cut(s)	330
Eco53kI	GAGCTC	1 cut(s)	272
Eco88I	CYCGRG	2 cut(s)	65, 302
Eco91I	GGTNACC	1 cut(s)	551
EcoICRI	GAGCTC	1 cut(s)	272
EcoO65I	GGTNACC	1 cut(s)	551
EcoRII	CCWGG	1 cut(s)	79
EcoT38I	GRGCYC	1 cut(s)	274
FaeI	CATG	8 cut(s)	64, 78, 134, 320, 408, 503, 536, 551
FaqI	GGGAC	1 cut(s)	558
FatI	CATG	8 cut(s)	60, 74, 130, 316, 404, 499, 532, 547
FauI	CCCGC	1 cut(s)	94
Fnu4HI	GCNGC	2 cut(s)	23, 330
FokI	GGATG	3 cut(s)	362, 395, 407
FriOI	GRGCYC	1 cut(s)	274
Fsp4HI	GCNGC	2 cut(s)	23, 330
FspI	TGCGCA	1 cut(s)	59
GlaI	GCGC	1 cut(s)	59
GluI	GCNGC	2 cut(s)	23, 330
HaeIII	GGCC	7 cut(s)	22, 79, 84, 158, 215, 288, 332
HapII	CCGG	2 cut(s)	16, 333
HhaI	GCGC	1 cut(s)	60
Hin1II	CATG	8 cut(s)	64, 78, 134, 320, 408, 503, 536, 551
Hin6I	GCGC	1 cut(s)	58
HinP1I	GCGC	1 cut(s)	58
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HinfI	GANTC	2 cut(s)	126, 312
HpaII	CCGG	2 cut(s)	16, 333
HphI	GGTGA	3 cut(s)	245, 293, 347
Hpy166II	GTNNAC	1 cut(s)	115
Hpy188I	TCNGA	1 cut(s)	435
Hpy188III	TCNNGA	1 cut(s)	67
Hpy8I	GTNNAC	1 cut(s)	115
HpyAV	CCTTC	3 cut(s)	62, 169, 224
HpyCH4III	ACNGT	2 cut(s)	43, 146
HpyCH4V	TGCA	3 cut(s)	200, 256, 536
HpyF10VI	GCNNNNNNNGC	1 cut(s)	365
HpyF3I	CTNAG	1 cut(s)	432
Hsp92II	CATG	8 cut(s)	64, 78, 134, 320, 408, 503, 536, 551
HspAI	GCGC	1 cut(s)	58
Kzo9I	GATC	3 cut(s)	12, 46, 69
LmnI	GCTCC	2 cut(s)	269, 365
LpnPI	CCDG	6 cut(s)	29, 66, 93, 346, 408, 513
MaeIII	GTNAC	5 cut(s)	233, 418, 495, 505, 551
MalI	GATC	3 cut(s)	14, 48, 71
MboI	GATC	3 cut(s)	12, 46, 69
MboII	GAAGA	4 cut(s)	154, 383, 398, 499
MhlI	GDGCHC	1 cut(s)	274
MlyI	GAGTC	1 cut(s)	321
MnlI	CCTC	7 cut(s)	45, 113, 260, 298, 301, 319, 475
MslI	CAYNNNNRTG	2 cut(s)	135, 180
MspI	CCGG	2 cut(s)	16, 333
MspR9I	CCNGG	1 cut(s)	81
Mva1269I	GAATGC	1 cut(s)	457
MvaI	CCWGG	1 cut(s)	81
MwoI	GCNNNNNNNGC	1 cut(s)	365
NdeII	GATC	3 cut(s)	12, 46, 69
NlaIII	CATG	8 cut(s)	64, 78, 134, 320, 408, 503, 536, 551
NlaIV	GGNNCC	1 cut(s)	367
NmuCI	GTSAC	2 cut(s)	233, 505
NsbI	TGCGCA	1 cut(s)	59
NspI	RCATGY	3 cut(s)	64, 503, 536
PaeI	GCATGC	2 cut(s)	64, 536
PaeR7I	CTCGAG	2 cut(s)	65, 302
PciI	ACATGT	1 cut(s)	499
PctI	GAATGC	1 cut(s)	457
PfeI	GAWTC	1 cut(s)	126
PflMI	CCANNNNNTGG	3 cut(s)	92, 148, 322
PkrI	GCNGC	2 cut(s)	24, 331
PleI	GAGTC	1 cut(s)	320
PpsI	GAGTC	1 cut(s)	320
PscI	ACATGT	1 cut(s)	499
Psp124BI	GAGCTC	1 cut(s)	274
Psp6I	CCWGG	1 cut(s)	79
PspEI	GGTNACC	1 cut(s)	551
PspGI	CCWGG	1 cut(s)	79
PspN4I	GGNNCC	1 cut(s)	367
PspPI	GGNCC	3 cut(s)	83, 214, 287
PspXI	VCTCGAGB	1 cut(s)	302
RseI	CAYNNNNRTG	2 cut(s)	135, 180
SacI	GAGCTC	1 cut(s)	274
SatI	GCNGC	2 cut(s)	23, 330
Sau3AI	GATC	3 cut(s)	12, 46, 69
Sau96I	GGNCC	3 cut(s)	83, 214, 287
SchI	GAGTC	1 cut(s)	321
ScrFI	CCNGG	1 cut(s)	81
SduI	GDGCHC	1 cut(s)	274
SetI	ASST	5 cut(s)	235, 250, 274, 342, 381
Sfr274I	CTCGAG	2 cut(s)	65, 302
SlaI	CTCGAG	2 cut(s)	65, 302
SmiMI	CAYNNNNRTG	2 cut(s)	135, 180
SmlI	CTYRAG	2 cut(s)	65, 302
SmoI	CTYRAG	2 cut(s)	65, 302
SphI	GCATGC	2 cut(s)	64, 536
SsiI	CCGC	4 cut(s)	23, 101, 166, 329
SstI	GAGCTC	1 cut(s)	274
StyD4I	CCNGG	1 cut(s)	79
TaaI	ACNGT	2 cut(s)	43, 146
TaqI	TCGA	5 cut(s)	45, 66, 135, 225, 303
TauI	GCSGC	2 cut(s)	25, 332
TfiI	GAWTC	1 cut(s)	126
TscAI	CASTG	2 cut(s)	46, 149
TseFI	GTSAC	2 cut(s)	233, 505
Tsp45I	GTSAC	2 cut(s)	233, 505
TspDTI	ATGAA	5 cut(s)	164, 243, 333, 393, 399
TspGWI	ACGGA	1 cut(s)	252
TspRI	CASTG	2 cut(s)	46, 149
Van91I	CCANNNNNTGG	3 cut(s)	92, 148, 322
XceI	RCATGY	3 cut(s)	64, 503, 536
XhoI	CTCGAG	2 cut(s)	65, 302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.