Rmu_sc0002584.1_g000001

Belongs to the pyruvate kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002584.1
OG0011610
Physical Location & Seq
Reverse (-)
1 .. 3609
3609 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 502 bp
atgggccagttcccagataagtcattagctgttctcagaagtgtcagtttgaggatcgagaggtggtggagggaagagaaacgtcatgaacctatgttactcccagctattggatcatcattttcagacagtatatcggaggagctttgtatttctgctgccaagatggatctgccggtccatcagacgacgaagtcatctgcaaaccgtcgacccaatgatcgaagtagggctgttgatgaagccattgagttgaaaaaatcgatggttgagaagggattggcacctgataggtatacatattcagtactaattgatggattgtgcagacagaagagatcagaagaagcaaaattggtattgaacgagatgtatgatataggtttgaatcctgactgcaccatgtacattgctttaattgatggattcttgaaagaaaataacgtggataaggccctcaggatcaaagaagagatggtcgctcgaggagttaagttgtgcg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000287 GO:0003006 GO:0003674 GO:0003824 GO:0004743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006082 GO:0006090 GO:0006091 GO:0006096 GO:0006139 GO:0006163 GO:0006164 GO:0006165 GO:0006629 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006754 GO:0006757 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009132 GO:0009135 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009166 GO:0009167 GO:0009168 GO:0009179 GO:0009185 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009791 GO:0009987 GO:0010035 GO:0010038 GO:0010154 GO:0010431 GO:0016052 GO:0016053 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019439 GO:0019637 GO:0019693 GO:0019752 GO:0021700 GO:0022414 GO:0030955 GO:0031420 GO:0032501 GO:0032502 GO:0032504 GO:0032787 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0042221 GO:0042866 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046031 GO:0046034 GO:0046390 GO:0046394 GO:0046434 GO:0046483 GO:0046496 GO:0046686 GO:0046700 GO:0046872 GO:0046939 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0061458 GO:0071695 GO:0071704 GO:0072330 GO:0072521 GO:0072522 GO:0072524 GO:0072525 GO:0090407 GO:1901135 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576
KEGG Pathways
Metabolic & Signaling
ko00010 ko00230 ko00620 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04922 ko04930 ko05165 ko05203 ko05230 map00010 map00230 map00620 map01100 map01110 map01120 map01130 map01200 map01230 map04922 map04930 map05165 map05203 map05230
Pfam Domains
Protein Families
PK PK_C

Protein Analysis

167

Amino Acids

19.02

Weight (kDa)

7.64

Isoelectric Point (pI)

60.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_long PF17177 66 - 166 1.8e-08 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 77 - 110 1.5e-10 PPR repeat family
PPR_1 PF12854 92 - 124 3.3e-10 PPR repeat
PPR PF01535 99 - 128 3.1e-06 PPR repeat
PPR_1 PF12854 128 - 160 6.6e-06 PPR repeat
PPR_2 PF13041 131 - 165 7.3e-06 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 193
AccB1I GGYRCC 1 cut(s) 283
AccB7I CCANNNNNTGG 1 cut(s) 110
AccI GTMKAC 2 cut(s) 211, 296
AclWI GGATC 4 cut(s) 62, 121, 177, 470
AfaI GTAC 2 cut(s) 309, 407
AfiI CCNNNNNNNGG 1 cut(s) 110
AgsI TTSAA 4 cut(s) 256, 364, 388, 433
AluBI AGCT 3 cut(s) 29, 107, 145
AluI AGCT 3 cut(s) 29, 107, 145
AlwI GGATC 4 cut(s) 62, 121, 177, 470
Ama87I CYCGRG 1 cut(s) 483
AoxI GGCC 2 cut(s) 4, 453
ApeKI GCWGC 1 cut(s) 158
AspS9I GGNCC 3 cut(s) 4, 178, 454
AvaI CYCGRG 1 cut(s) 483
AvaII GGWCC 1 cut(s) 178
AxyI CCTNAGG 1 cut(s) 458
BanI GGYRCC 1 cut(s) 283
BbvI GCAGC 1 cut(s) 145
BccI CCATC 6 cut(s) 160, 189, 259, 311, 416, 469
BisI GCNGC 1 cut(s) 159
BlsI GCNGC 1 cut(s) 160
BmcAI AGTACT 1 cut(s) 309
Bme18I GGWCC 1 cut(s) 178
BmeT110I CYCGRG 1 cut(s) 483
BmgT120I GGNCC 3 cut(s) 4, 178, 454
BmiI GGNNCC 1 cut(s) 285
Bsa29I ATCGAT 1 cut(s) 263
Bsc4I CCNNNNNNNGG 1 cut(s) 110
Bse118I RCCGGY 1 cut(s) 175
Bse1I ACTGG 1 cut(s) 7
Bse21I CCTNAGG 1 cut(s) 458
Bse3DI GCAATG 1 cut(s) 408
BseCI ATCGAT 1 cut(s) 263
BseLI CCNNNNNNNGG 1 cut(s) 110
BseMI GCAATG 1 cut(s) 408
BseMII CTCAG 2 cut(s) 49, 472
BseNI ACTGG 1 cut(s) 7
BseRI GAGGAG 2 cut(s) 155, 501
BseXI GCAGC 1 cut(s) 145
BseYI CCCAGC 1 cut(s) 103
BsgI GTGCAG 2 cut(s) 346, 382
BshFI GGCC 2 cut(s) 6, 455
BshNI GGYRCC 1 cut(s) 283
BshVI ATCGAT 1 cut(s) 263
BsiHKCI CYCGRG 1 cut(s) 483
BsiSI CCGG 1 cut(s) 176
BslI CCNNNNNNNGG 1 cut(s) 110
BsnI GGCC 2 cut(s) 6, 455
BsoBI CYCGRG 1 cut(s) 483
Bsp1407I TGTACA 1 cut(s) 405
Bsp143I GATC 6 cut(s) 54, 113, 169, 220, 338, 462
BspANI GGCC 2 cut(s) 6, 455
BspCNI CTCAG 2 cut(s) 48, 471
BspDI ATCGAT 1 cut(s) 263
BspHI TCATGA 1 cut(s) 85
BspLI GGNNCC 1 cut(s) 285
BspPI GGATC 4 cut(s) 62, 121, 177, 470
BspT107I GGYRCC 1 cut(s) 283
BsrDI GCAATG 1 cut(s) 408
BsrFI RCCGGY 1 cut(s) 175
BsrGI TGTACA 1 cut(s) 405
BsrI ACTGG 1 cut(s) 7
BssAI RCCGGY 1 cut(s) 175
BssMI GATC 6 cut(s) 54, 113, 169, 220, 338, 462
BssNAI GTATAC 1 cut(s) 297
Bst1107I GTATAC 1 cut(s) 297
Bst4CI ACNGT 2 cut(s) 131, 209
Bst6I CTCTTC 3 cut(s) 69, 329, 465
BstAUI TGTACA 1 cut(s) 405
BstDEI CTNAG 2 cut(s) 35, 458
BstKTI GATC 6 cut(s) 57, 116, 172, 223, 341, 465
BstMBI GATC 6 cut(s) 54, 113, 169, 220, 338, 462
BstV1I GCAGC 1 cut(s) 145
BstX2I RGATCY 1 cut(s) 169
BstYI RGATCY 1 cut(s) 169
BstZ17I GTATAC 1 cut(s) 297
Bsu15I ATCGAT 1 cut(s) 263
Bsu36I CCTNAGG 1 cut(s) 458
BsuRI GGCC 2 cut(s) 6, 455
BsuTUI ATCGAT 1 cut(s) 263
CciI TCATGA 1 cut(s) 85
Cfr10I RCCGGY 1 cut(s) 175
Cfr13I GGNCC 3 cut(s) 4, 178, 454
ClaI ATCGAT 1 cut(s) 263
Csp6I GTAC 2 cut(s) 308, 406
CviAII CATG 2 cut(s) 86, 403
CviJI RGCY 7 cut(s) 6, 29, 107, 145, 233, 245, 455
CviKI_1 RGCY 7 cut(s) 6, 29, 107, 145, 233, 245, 455
CviQI GTAC 2 cut(s) 308, 406
DdeI CTNAG 2 cut(s) 35, 458
DpnI GATC 6 cut(s) 56, 115, 171, 222, 340, 464
DpnII GATC 6 cut(s) 54, 113, 169, 220, 338, 462
DrdI GACNNNNNNGTC 1 cut(s) 193
DseDI GACNNNNNNGTC 1 cut(s) 193
Eam1104I CTCTTC 3 cut(s) 69, 329, 465
EarI CTCTTC 3 cut(s) 69, 329, 465
Eco47I GGWCC 1 cut(s) 178
Eco81I CCTNAGG 1 cut(s) 458
Eco88I CYCGRG 1 cut(s) 483
EcoO109I RGGNCCY 1 cut(s) 454
FaeI CATG 2 cut(s) 89, 406
FaiI YATR 8 cut(s) 87, 95, 134, 297, 301, 375, 380, 404
FatI CATG 2 cut(s) 85, 402
FblI GTMKAC 2 cut(s) 211, 296
Fnu4HI GCNGC 1 cut(s) 159
Fsp4HI GCNGC 1 cut(s) 159
GluI GCNGC 1 cut(s) 159
GsaI CCCAGC 1 cut(s) 107
HaeIII GGCC 2 cut(s) 6, 455
HapII CCGG 1 cut(s) 176
Hin1II CATG 2 cut(s) 89, 406
HincII GTYRAC 1 cut(s) 212
HindII GTYRAC 1 cut(s) 212
HinfI GANTC 2 cut(s) 388, 426
HpaII CCGG 1 cut(s) 176
Hpy166II GTNNAC 2 cut(s) 212, 297
Hpy188I TCNGA 5 cut(s) 38, 127, 139, 186, 343
Hpy188III TCNNGA 5 cut(s) 58, 86, 392, 430, 460
Hpy8I GTNNAC 2 cut(s) 212, 297
Hpy99I CGWCG 2 cut(s) 193, 213
HpyAV CCTTC 1 cut(s) 268
HpyCH4III ACNGT 2 cut(s) 131, 209
HpyCH4IV ACGT 2 cut(s) 82, 444
HpyCH4V TGCA 3 cut(s) 203, 327, 399
HpyF3I CTNAG 2 cut(s) 35, 458
HpySE526I ACGT 2 cut(s) 82, 444
Hsp92II CATG 2 cut(s) 89, 406
Kzo9I GATC 6 cut(s) 54, 113, 169, 220, 338, 462
LmnI GCTCC 1 cut(s) 142
LpnPI CCDG 7 cut(s) 20, 27, 117, 189, 300, 405, 445
Lsp1109I GCAGC 1 cut(s) 145
MaeII ACGT 2 cut(s) 82, 444
MaeIII GTNAC 1 cut(s) 96
MalI GATC 6 cut(s) 56, 115, 171, 222, 340, 464
MboI GATC 6 cut(s) 54, 113, 169, 220, 338, 462
MboII GAAGA 4 cut(s) 86, 346, 356, 482
MflI RGATCY 1 cut(s) 169
MluCI AATT 3 cut(s) 312, 353, 417
MnlI CCTC 6 cut(s) 45, 54, 63, 133, 467, 479
MseI TTAA 2 cut(s) 416, 492
MspI CCGG 1 cut(s) 176
NdeII GATC 6 cut(s) 54, 113, 169, 220, 338, 462
NlaIII CATG 2 cut(s) 89, 406
NlaIV GGNNCC 1 cut(s) 285
PaeR7I CTCGAG 1 cut(s) 483
PagI TCATGA 1 cut(s) 85
PfeI GAWTC 2 cut(s) 388, 426
PflFI GACNNNGTC 1 cut(s) 193
PflMI CCANNNNNTGG 1 cut(s) 110
PkrI GCNGC 1 cut(s) 160
PspFI CCCAGC 1 cut(s) 103
PspN4I GGNNCC 1 cut(s) 285
PspPI GGNCC 3 cut(s) 4, 178, 454
PspXI VCTCGAGB 1 cut(s) 483
PsrI GAACNNNNNNTAC 2 cut(s) 81, 113
PsuI RGATCY 1 cut(s) 169
PsyI GACNNNGTC 1 cut(s) 193
RsaI GTAC 2 cut(s) 309, 407
RsaNI GTAC 2 cut(s) 308, 406
SalI GTCGAC 1 cut(s) 210
SaqAI TTAA 2 cut(s) 416, 492
SatI GCNGC 1 cut(s) 159
Sau3AI GATC 6 cut(s) 54, 113, 169, 220, 338, 462
Sau96I GGNCC 3 cut(s) 4, 178, 454
ScaI AGTACT 1 cut(s) 309
Sfr274I CTCGAG 1 cut(s) 483
SinI GGWCC 1 cut(s) 178
SlaI CTCGAG 1 cut(s) 483
SmlI CTYRAG 1 cut(s) 483
SmoI CTYRAG 1 cut(s) 483
Sse9I AATT 3 cut(s) 312, 353, 417
TaaI ACNGT 2 cut(s) 131, 209
TaiI ACGT 2 cut(s) 85, 447
TaqI TCGA 5 cut(s) 57, 211, 223, 263, 484
TasI AATT 3 cut(s) 312, 353, 417
TatI WGTACW 2 cut(s) 307, 405
TfiI GAWTC 2 cut(s) 388, 426
Tru1I TTAA 2 cut(s) 416, 492
Tru9I TTAA 2 cut(s) 416, 492
TseI GCWGC 1 cut(s) 158
TspDTI ATGAA 2 cut(s) 102, 255
Tth111I GACNNNGTC 1 cut(s) 193
Van91I CCANNNNNTGG 1 cut(s) 110
VpaK11BI GGWCC 1 cut(s) 178
XhoI CTCGAG 1 cut(s) 483
XmiI GTMKAC 2 cut(s) 211, 296
ZrmI AGTACT 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.