Rmu_sc0002709.1_g000001

Regulator of chromosome condensation (RCC1) repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002709.1
OG0004604
Physical Location & Seq
Reverse (-)
8168 .. 10793
2626 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1032 bp
atgaatgacggcggagatgtgaatatggaggagggcgggggcggagagaaggtggtgttgatgtggggttatcttcccggagctctgccgcaaaggtcgccgcttttgtcgccgacggttgtgcggccgggtggtgattactcctggagggatgtgtttggcggcggttgcggcttcgccatggccatttctgagtctggaaagctgattacatggggttcgacagatgatctgggtcaaagctatgtgacatctgggaagcatggggaaacaccggagccgtttcctcttccagctgaagtttctctagttaaggcagctgcaggttgggcgcattgtgttgcagttacagatactggaggagtttacacatggggatggaaagagtgtgttccctctgggaaggtcattgctgaaccatctacgagtgcaaactttgaaaaggatgtattggaaaggcagagttctttcttgacagaccaagatagccctcgctctcaaggctcacgatccactggcggaatcatgtctgctactgaagctagaggagctggagaagaaagttcaaagcgaagaagagtatcttcagcaaagcaagcagctgaaagttcatcgtctggtgatgaaactctctcagcattgccatgtcttgtgactttgaacccaggagttagaatagccaatgttgctgctggaggacgccatactctagcattgtcagatatgggacaggtgtggggatggggatatggaggtgaagggcagcttggtctgggctcacggatacgtatggtgtccacccctcatcctataccttgtatcaagtcctcttcttatgggatcatgaattcagaggaacacagtttcagagtacctggaagttatgtgaaagggattgcctgcggaggtcgacatagtgcagtgataacagctggaaggatgttcagtcattggaactataagatccgtcttccaaactacatgatatatcagagggcaagccttctgtattcaaaggttacttttgcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RCC1 RCC1_2

Protein Analysis

343

Amino Acids

36.37

Weight (kDa)

7.64

Isoelectric Point (pI)

47.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 36 - 130 2.2e-13 RCC1-like domain
WD40_RLD PF25390 212 - 311 9.2e-15 RCC1-like domain
RCC1_2 PF13540 226 - 255 1.5e-07 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 243 - 309 5.5e-07 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 314
AccI GTMKAC 1 cut(s) 910
AclWI GGATC 3 cut(s) 504, 848, 958
AcoI YGGCCR 2 cut(s) 125, 183
AcsI RAATTY 1 cut(s) 847
AcuI CTGAAG 3 cut(s) 318, 558, 570
AcyI GRCGYC 1 cut(s) 700
AfaI GTAC 1 cut(s) 873
AgsI TTSAA 4 cut(s) 440, 567, 661, 1014
AjnI CCWGG 3 cut(s) 143, 664, 874
AjuI GAANNNNNNNTTGG 2 cut(s) 750, 782
Alw21I GWGCWC 1 cut(s) 85
AlwI GGATC 3 cut(s) 504, 848, 958
AlwNI CAGNNNCTG 1 cut(s) 356
AoxI GGCC 2 cut(s) 125, 183
ApeKI GCWGC 5 cut(s) 317, 320, 599, 689, 763
ApoI RAATTY 1 cut(s) 847
AspLEI GCGC 1 cut(s) 334
AsuC2I CCSGG 2 cut(s) 78, 129
AsuHPI GGTGA 3 cut(s) 146, 632, 767
BalI TGGCCA 1 cut(s) 185
BanII GRGCYC 2 cut(s) 85, 779
BbsI GAAGAC 1 cut(s) 962
Bbv12I GWGCWC 1 cut(s) 85
BbvI GCAGC 5 cut(s) 307, 329, 611, 676, 775
BccI CCATC 3 cut(s) 372, 427, 735
BceAI ACGGC 2 cut(s) 25, 265
BcgI CGANNNNNNTGC 2 cut(s) 103, 137
BciT130I CCWGG 3 cut(s) 145, 666, 876
BciVI GTATCC 1 cut(s) 777
BcnI CCSGG 2 cut(s) 78, 129
BfaI CTAG 3 cut(s) 308, 543, 710
BfmI CTRYAG 1 cut(s) 321
BfuAI ACCTGC 1 cut(s) 314
BfuI GTATCC 1 cut(s) 777
Bme1390I CCNGG 5 cut(s) 78, 129, 145, 666, 876
BmiI GGNNCC 1 cut(s) 279
BmrFI CCNGG 5 cut(s) 78, 129, 145, 666, 876
BpiI GAAGAC 1 cut(s) 962
BpmI CTGGAG 4 cut(s) 166, 378, 573, 714
BpuEI CTTGAG 1 cut(s) 483
BpuMI CCSGG 2 cut(s) 78, 129
BsaAI YACGTR 1 cut(s) 788
BsaHI GRCGYC 1 cut(s) 700
BsaJI CCNNGG 2 cut(s) 180, 664
BsaWI WCCGGW 1 cut(s) 274
BsaXI ACNNNNNCTCC 2 cut(s) 36, 66
Bse1I ACTGG 2 cut(s) 361, 520
Bse3DI GCAATG 2 cut(s) 408, 638
BseBI CCWGG 3 cut(s) 145, 666, 876
BseDI CCNNGG 2 cut(s) 180, 664
BseGI GGATG 6 cut(s) 157, 383, 451, 746, 805, 945
BseMI GCAATG 2 cut(s) 408, 638
BseMII CTCAG 2 cut(s) 183, 648
BseNI ACTGG 2 cut(s) 361, 520
BseRI GAGGAG 3 cut(s) 44, 375, 561
BseX3I CGGCCG 1 cut(s) 125
BseXI GCAGC 5 cut(s) 307, 329, 611, 676, 775
BsgI GTGCAG 1 cut(s) 939
Bsh1285I CGRYCG 1 cut(s) 128
BshFI GGCC 2 cut(s) 127, 185
BsiEI CGRYCG 1 cut(s) 128
BsiHKAI GWGCWC 1 cut(s) 85
BsiSI CCGG 3 cut(s) 78, 128, 275
BslFI GGGAC 1 cut(s) 741
BsmFI GGGAC 1 cut(s) 741
BsnI GGCC 2 cut(s) 127, 185
Bsp1286I GDGCHC 2 cut(s) 85, 779
Bsp143I GATC 4 cut(s) 229, 509, 840, 963
Bsp19I CCATGG 1 cut(s) 180
BspANI GGCC 2 cut(s) 127, 185
BspCNI CTCAG 2 cut(s) 184, 647
BspHI TCATGA 1 cut(s) 843
BspLI GGNNCC 1 cut(s) 279
BspMAI CTGCAG 1 cut(s) 325
BspMI ACCTGC 1 cut(s) 314
BspPI GGATC 3 cut(s) 504, 848, 958
BsrDI GCAATG 2 cut(s) 408, 638
BsrI ACTGG 2 cut(s) 361, 520
BssECI CCNNGG 2 cut(s) 180, 664
BssMI GATC 4 cut(s) 229, 509, 840, 963
BssNI GRCGYC 1 cut(s) 700
BssT1I CCWWGG 1 cut(s) 180
Bst2UI CCWGG 3 cut(s) 145, 666, 876
Bst4CI ACNGT 2 cut(s) 118, 863
Bst6I CTCTTC 3 cut(s) 294, 571, 835
BstACI GRCGYC 1 cut(s) 700
BstBAI YACGTR 1 cut(s) 788
BstC8I GCNNGC 3 cut(s) 597, 901, 1000
BstDEI CTNAG 2 cut(s) 192, 634
BstDSI CCRYGG 1 cut(s) 180
BstF5I GGATG 6 cut(s) 157, 383, 451, 746, 805, 945
BstHHI GCGC 1 cut(s) 334
BstKTI GATC 4 cut(s) 232, 512, 843, 966
BstMBI GATC 4 cut(s) 229, 509, 840, 963
BstMCI CGRYCG 1 cut(s) 128
BstNI CCWGG 3 cut(s) 145, 666, 876
BstSCI CCNGG 5 cut(s) 76, 127, 143, 664, 874
BstSFI CTRYAG 1 cut(s) 321
BstSNI TACGTA 1 cut(s) 788
BstV1I GCAGC 5 cut(s) 307, 329, 611, 676, 775
BstV2I GAAGAC 1 cut(s) 962
BstX2I RGATCY 1 cut(s) 963
BstYI RGATCY 1 cut(s) 963
BstZI CGGCCG 1 cut(s) 125
BsuI GTATCC 1 cut(s) 777
BsuRI GGCC 2 cut(s) 127, 185
BtgI CCRYGG 1 cut(s) 180
BtsCI GGATG 6 cut(s) 157, 383, 451, 746, 805, 945
BtsI GCAGTG 1 cut(s) 927
BtsIMutI CAGTG 2 cut(s) 513, 927
BveI ACCTGC 1 cut(s) 314
Cac8I GCNNGC 3 cut(s) 597, 901, 1000
CaiI CAGNNNCTG 1 cut(s) 356
CciI TCATGA 1 cut(s) 843
CfoI GCGC 1 cut(s) 334
CseI GACGC 1 cut(s) 708
Csp6I GTAC 1 cut(s) 872
CviAII CATG 8 cut(s) 181, 213, 263, 372, 526, 645, 844, 982
CviQI GTAC 1 cut(s) 872
DdeI CTNAG 2 cut(s) 192, 634
DpnI GATC 4 cut(s) 231, 511, 842, 965
DpnII GATC 4 cut(s) 229, 509, 840, 963
EaeI YGGCCR 2 cut(s) 125, 183
EagI CGGCCG 1 cut(s) 125
Eam1104I CTCTTC 3 cut(s) 294, 571, 835
EarI CTCTTC 3 cut(s) 294, 571, 835
EciI GGCGGA 3 cut(s) 27, 57, 534
Ecl136II GAGCTC 1 cut(s) 83
EclXI CGGCCG 1 cut(s) 125
Eco105I TACGTA 1 cut(s) 788
Eco130I CCWWGG 1 cut(s) 180
Eco24I GRGCYC 2 cut(s) 85, 779
Eco52I CGGCCG 1 cut(s) 125
Eco53kI GAGCTC 1 cut(s) 83
Eco57I CTGAAG 3 cut(s) 318, 558, 570
EcoICRI GAGCTC 1 cut(s) 83
EcoRI GAATTC 1 cut(s) 847
EcoRII CCWGG 3 cut(s) 143, 664, 874
EcoT14I CCWWGG 1 cut(s) 180
EcoT38I GRGCYC 2 cut(s) 85, 779
ErhI CCWWGG 1 cut(s) 180
FaeI CATG 8 cut(s) 184, 216, 266, 375, 529, 648, 847, 985
FalI AAGNNNNNCTT 4 cut(s) 568, 600, 750, 782
FaqI GGGAC 1 cut(s) 741
FatI CATG 8 cut(s) 180, 212, 262, 371, 525, 644, 843, 981
FauI CCCGC 1 cut(s) 29
FblI GTMKAC 1 cut(s) 910
FokI GGATG 6 cut(s) 164, 390, 458, 753, 792, 952
FriOI GRGCYC 2 cut(s) 85, 779
FspBI CTAG 3 cut(s) 308, 543, 710
GlaI GCGC 1 cut(s) 333
GsuI CTGGAG 4 cut(s) 166, 378, 573, 714
HaeIII GGCC 2 cut(s) 127, 185
HapII CCGG 3 cut(s) 78, 128, 275
HgaI GACGC 1 cut(s) 708
HhaI GCGC 1 cut(s) 334
Hin1I GRCGYC 1 cut(s) 700
Hin1II CATG 8 cut(s) 184, 216, 266, 375, 529, 648, 847, 985
Hin6I GCGC 1 cut(s) 332
HinP1I GCGC 1 cut(s) 332
HincII GTYRAC 1 cut(s) 911
HindII GTYRAC 1 cut(s) 911
HinfI GANTC 2 cut(s) 194, 522
HpaII CCGG 3 cut(s) 78, 128, 275
HphI GGTGA 3 cut(s) 146, 632, 767
Hpy166II GTNNAC 3 cut(s) 367, 798, 911
Hpy188I TCNGA 5 cut(s) 193, 721, 853, 869, 993
Hpy188III TCNNGA 4 cut(s) 198, 472, 507, 844
Hpy8I GTNNAC 3 cut(s) 367, 798, 911
Hpy99I CGWCG 1 cut(s) 118
HpyAV CCTTC 5 cut(s) 43, 397, 752, 930, 1013
HpyCH4III ACNGT 2 cut(s) 118, 863
HpyCH4IV ACGT 1 cut(s) 787
HpyCH4V TGCA 5 cut(s) 323, 344, 431, 920, 1028
HpyF3I CTNAG 2 cut(s) 192, 634
HpySE526I ACGT 1 cut(s) 787
Hsp92I GRCGYC 1 cut(s) 700
Hsp92II CATG 8 cut(s) 184, 216, 266, 375, 529, 648, 847, 985
HspAI GCGC 1 cut(s) 332
Kzo9I GATC 4 cut(s) 229, 509, 840, 963
LmnI GCTCC 3 cut(s) 80, 277, 548
Lsp1109I GCAGC 5 cut(s) 307, 329, 611, 676, 775
MaeI CTAG 3 cut(s) 308, 543, 710
MaeII ACGT 1 cut(s) 787
MaeIII GTNAC 4 cut(s) 247, 346, 652, 1018
MalI GATC 4 cut(s) 231, 511, 842, 965
MboI GATC 4 cut(s) 229, 509, 840, 963
MboII GAAGA 8 cut(s) 65, 281, 569, 576, 585, 588, 822, 962
MflI RGATCY 1 cut(s) 963
MhlI GDGCHC 2 cut(s) 85, 779
MlsI TGGCCA 1 cut(s) 185
MluCI AATT 1 cut(s) 847
MluNI TGGCCA 1 cut(s) 185
MlyI GAGTC 1 cut(s) 203
Mox20I TGGCCA 1 cut(s) 185
MscI TGGCCA 1 cut(s) 185
MseI TTAA 1 cut(s) 312
MslI CAYNNNNRTG 2 cut(s) 376, 643
Msp20I TGGCCA 1 cut(s) 185
MspA1I CMGCKG 4 cut(s) 296, 320, 602, 932
MspI CCGG 3 cut(s) 78, 128, 275
MspR9I CCNGG 5 cut(s) 78, 129, 145, 666, 876
MvaI CCWGG 3 cut(s) 145, 666, 876
NciI CCSGG 2 cut(s) 78, 129
NcoI CCATGG 1 cut(s) 180
NdeII GATC 4 cut(s) 229, 509, 840, 963
NlaIII CATG 8 cut(s) 184, 216, 266, 375, 529, 648, 847, 985
NlaIV GGNNCC 1 cut(s) 279
NmuCI GTSAC 2 cut(s) 247, 652
PagI TCATGA 1 cut(s) 843
PfeI GAWTC 1 cut(s) 522
PfoI TCCNGGA 2 cut(s) 76, 143
PleI GAGTC 1 cut(s) 202
PpsI GAGTC 1 cut(s) 202
Ppu21I YACGTR 1 cut(s) 788
Psp124BI GAGCTC 1 cut(s) 85
Psp6I CCWGG 3 cut(s) 143, 664, 874
PspGI CCWGG 3 cut(s) 143, 664, 874
PspN4I GGNNCC 1 cut(s) 279
PstI CTGCAG 1 cut(s) 325
PstNI CAGNNNCTG 1 cut(s) 356
PsuI RGATCY 1 cut(s) 963
PvuII CAGCTG 4 cut(s) 296, 320, 602, 932
RsaI GTAC 1 cut(s) 873
RsaNI GTAC 1 cut(s) 872
RseI CAYNNNNRTG 2 cut(s) 376, 643
SacI GAGCTC 1 cut(s) 85
SalI GTCGAC 1 cut(s) 909
SaqAI TTAA 1 cut(s) 312
Sau3AI GATC 4 cut(s) 229, 509, 840, 963
SchI GAGTC 1 cut(s) 203
ScrFI CCNGG 5 cut(s) 78, 129, 145, 666, 876
SduI GDGCHC 2 cut(s) 85, 779
SfcI CTRYAG 1 cut(s) 321
SmiMI CAYNNNNRTG 2 cut(s) 376, 643
SmlI CTYRAG 1 cut(s) 498
SmoI CTYRAG 1 cut(s) 498
SnaBI TACGTA 1 cut(s) 788
Sse9I AATT 1 cut(s) 847
SspMI CTAG 3 cut(s) 308, 543, 710
SstI GAGCTC 1 cut(s) 85
StyD4I CCNGG 5 cut(s) 76, 127, 143, 664, 874
StyI CCWWGG 1 cut(s) 180
TaaI ACNGT 2 cut(s) 118, 863
TaiI ACGT 1 cut(s) 790
TaqI TCGA 2 cut(s) 221, 910
TasI AATT 1 cut(s) 847
TauI GCSGC 5 cut(s) 91, 103, 127, 165, 174
TfiI GAWTC 1 cut(s) 522
Tru1I TTAA 1 cut(s) 312
Tru9I TTAA 1 cut(s) 312
TscAI CASTG 2 cut(s) 520, 927
TseFI GTSAC 2 cut(s) 247, 652
TseI GCWGC 5 cut(s) 317, 320, 599, 689, 763
Tsp45I GTSAC 2 cut(s) 247, 652
TspDTI ATGAA 4 cut(s) 17, 600, 639, 860
TspGWI ACGGA 2 cut(s) 796, 956
TspRI CASTG 2 cut(s) 520, 927
XapI RAATTY 1 cut(s) 847
XmiI GTMKAC 1 cut(s) 910
XspI CTAG 3 cut(s) 308, 543, 710
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.