Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002752.1

Orthogroup ID

OG0010225

Physical Location & Seq

Genomic Coordinates Forward (+)

10211 .. 12495

Gene Structure 2285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

atgtataatagtgccccgcctatcaaatcgtggcaaacagagttgccgttaatggattcaaatacccatctcaatctggagcaccaacaaccccaccaccaacccaattctgggttgctccgatttcgctctgctccgagctcaatgttcgctgagaacaacaacgccgccgatttgggggtccataagggaactttaatcgagggtggttccgactccgacagattgttctcgagattcgtgagctacaacaacgccgatttgggggtccataagggaactttaatcgagggtggttccgactccgacagattgttctcgagattcgtgagctacagtcacagtaacgactcggaatcgtggccgtcgagtttccaggagttcgaggacaaatctacggtgacggaggcggctgtgacggcgagtcgtatgagctcacagcatcagcagcaggggtttcctggtcttccacctcattatccgagacagaactcgtttgggagtggtaatggctcttatgggttggtgggttcggctgcagtggaacctcacccgcaagccaagactgttacttccaatcttgttcggcagagtagttctcctgctgggcttttctccaacaacacctctgttcaaaatggattcccatttggagcttggaatgatccatcaaattttgccgataatttaggtggcatgagaagagaccaagataatgaccagaagttattttctgctactcagaatggtgatcttgggaaccggattcatatattatcccaccacttgagtttaccaaaaaattcagcagaagttgccatggaaaagttcctccaactccaagattctgtaccttgcaaagttagagcaaagcgaggttgtgccactcatcctcgaagcattgcagaaagggtgagaagaacacggattagtgaacgaatgaggaagctacaagagcttgtgccgaacatggacaagcaaacaaatacagcagacatgttggacttggctgttgattatattaaagaacttcagaaacagttcaagagtcttagcgatgttcgagccaactgcaagtgtttgagtatgcagaagcccgttcaaaatcagatagtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

372

Amino Acids

41.23

Weight (kDa)

8.3

Isoelectric Point (pI)

48.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	300 - 345	7.7e-10	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42280 AT2G42280 AT2G42280
fragaria_vesca	FvH4_6g22880 FvH4_6g22880
malus_domestica	MD12G1062600.v1.1 MD14G1063300.v1.1
prunus_persica	Prupe.7G071500_v2.0.a1
pyrus_communis	pycom12g05530 pycom14g05110
rosa_chinensis	RchiOBHm_Chr3g0480621
rosa_laevigata	RLG00000023464
rosa_multiflora	Rmu_sc0002752.1_g000005
rosa_roxburghii	Rroxscaffold_6G00401200
rosa_rugosa	Rorug03G0184300 Rorug03G0184400
rosa_samantha	Rh3AG236500 Rh3BG269400 Rh3CG266100 Rh3DG261900
rosa_wichuraiana	Rw3G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	17, 168, 410, 554
AclWI	GGATC	1 cut(s)	659
AcoI	YGGCCR	1 cut(s)	362
AcsI	RAATTY	2 cut(s)	673, 802
AcuI	CTGAAG	1 cut(s)	1016
AfaI	GTAC	1 cut(s)	852
AfiI	CCNNNNNNNGG	4 cut(s)	110, 111, 177, 264
AflIII	ACRYGT	1 cut(s)	996
AgsI	TTSAA	4 cut(s)	60, 635, 1045, 1103
AhdI	GACNNNNNGTC	1 cut(s)	423
AjnI	CCWGG	2 cut(s)	375, 460
AluBI	AGCT	7 cut(s)	141, 246, 333, 435, 656, 949, 958
AluI	AGCT	7 cut(s)	141, 246, 333, 435, 656, 949, 958
Alw21I	GWGCWC	3 cut(s)	84, 143, 437
Alw26I	GTCTC	2 cut(s)	478, 699
AlwI	GGATC	1 cut(s)	659
Ama87I	CYCGRG	2 cut(s)	232, 319
AoxI	GGCC	1 cut(s)	362
ApeKI	GCWGC	2 cut(s)	448, 536
ApoI	RAATTY	2 cut(s)	673, 802
Asp700I	GAANNNNTTC	1 cut(s)	1040
AspS9I	GGNCC	2 cut(s)	181, 268
AsuHPI	GGTGA	4 cut(s)	412, 542, 761, 925
AvaI	CYCGRG	2 cut(s)	232, 319
AvaII	GGWCC	2 cut(s)	181, 268
BaeGI	GKGCMC	1 cut(s)	16
BanII	GRGCYC	2 cut(s)	143, 437
BbsI	GAAGAC	1 cut(s)	458
Bbv12I	GWGCWC	3 cut(s)	84, 143, 437
BbvI	GCAGC	2 cut(s)	460, 523
BccI	CCATC	2 cut(s)	75, 676
BceAI	ACGGC	3 cut(s)	31, 349, 435
BcgI	CGANNNNNNTGC	2 cut(s)	1053, 1087
BciT130I	CCWGG	2 cut(s)	377, 462
BcoDI	GTCTC	2 cut(s)	478, 699
BfmI	CTRYAG	2 cut(s)	334, 537
BisI	GCNGC	4 cut(s)	168, 411, 449, 537
BlsI	GCNGC	4 cut(s)	169, 412, 450, 538
Bme1390I	CCNGG	2 cut(s)	377, 462
Bme18I	GGWCC	2 cut(s)	181, 268
BmeRI	GACNNNNNGTC	1 cut(s)	423
BmeT110I	CYCGRG	2 cut(s)	232, 319
BmgT120I	GGNCC	2 cut(s)	181, 268
BmiI	GGNNCC	6 cut(s)	182, 211, 269, 298, 546, 761
BmrFI	CCNGG	2 cut(s)	377, 462
BmsI	GCATC	1 cut(s)	451
BpiI	GAAGAC	1 cut(s)	458
BplI	GAGNNNNNCTC	2 cut(s)	583, 615
BpmI	CTGGAG	1 cut(s)	98
BpuEI	CTTGAG	1 cut(s)	808
BsaI	GGTCTC	1 cut(s)	699
BsaJI	CCNNGG	1 cut(s)	819
BsaWI	WCCGGW	1 cut(s)	762
Bsc4I	CCNNNNNNNGG	4 cut(s)	110, 111, 177, 264
Bse3DI	GCAATG	1 cut(s)	900
BseBI	CCWGG	2 cut(s)	377, 462
BseDI	CCNNGG	1 cut(s)	819
BseGI	GGATG	1 cut(s)	889
BseLI	CCNNNNNNNGG	4 cut(s)	110, 111, 177, 264
BseMI	GCAATG	1 cut(s)	900
BseMII	CTCAG	2 cut(s)	144, 755
BseSI	GKGCMC	1 cut(s)	16
BseXI	GCAGC	2 cut(s)	460, 523
BseYI	CCCAGC	1 cut(s)	605
BshFI	GGCC	1 cut(s)	364
BsiHKAI	GWGCWC	3 cut(s)	84, 143, 437
BsiHKCI	CYCGRG	2 cut(s)	232, 319
BsiSI	CCGG	1 cut(s)	763
BslI	CCNNNNNNNGG	4 cut(s)	110, 111, 177, 264
BsmAI	GTCTC	2 cut(s)	478, 699
BsnI	GGCC	1 cut(s)	364
Bso31I	GGTCTC	1 cut(s)	699
BsoBI	CYCGRG	2 cut(s)	232, 319
Bsp1286I	GDGCHC	4 cut(s)	16, 84, 143, 437
Bsp143I	GATC	2 cut(s)	664, 751
Bsp19I	CCATGG	1 cut(s)	819
BspACI	CCGC	4 cut(s)	17, 168, 410, 554
BspANI	GGCC	1 cut(s)	364
BspCNI	CTCAG	2 cut(s)	145, 754
BspLI	GGNNCC	6 cut(s)	182, 211, 269, 298, 546, 761
BspMAI	CTGCAG	1 cut(s)	541
BspPI	GGATC	1 cut(s)	659
BspTNI	GGTCTC	1 cut(s)	699
BsrDI	GCAATG	1 cut(s)	900
BssECI	CCNNGG	1 cut(s)	819
BssMI	GATC	2 cut(s)	664, 751
BssT1I	CCWWGG	1 cut(s)	819
Bst2UI	CCWGG	2 cut(s)	377, 462
Bst4CI	ACNGT	5 cut(s)	338, 344, 400, 568, 1041
Bst6I	CTCTTC	1 cut(s)	697
BstAPI	GCANNNNNTGC	1 cut(s)	815
BstC8I	GCNNGC	1 cut(s)	558
BstDEI	CTNAG	3 cut(s)	153, 741, 1052
BstDSI	CCRYGG	1 cut(s)	819
BstF5I	GGATG	1 cut(s)	889
BstKTI	GATC	2 cut(s)	667, 754
BstMAI	GTCTC	2 cut(s)	478, 699
BstMBI	GATC	2 cut(s)	664, 751
BstMWI	GCNNNNNNNGC	4 cut(s)	419, 448, 815, 955
BstNI	CCWGG	2 cut(s)	377, 462
BstNSI	RCATGY	1 cut(s)	1000
BstSCI	CCNGG	2 cut(s)	375, 460
BstSFI	CTRYAG	2 cut(s)	334, 537
BstSLI	GKGCMC	1 cut(s)	16
BstV1I	GCAGC	2 cut(s)	460, 523
BstV2I	GAAGAC	1 cut(s)	458
BsuRI	GGCC	1 cut(s)	364
BtgI	CCRYGG	1 cut(s)	819
BtgZI	GCGATG	1 cut(s)	1071
BtsCI	GGATG	1 cut(s)	889
BtsI	GCAGTG	1 cut(s)	546
BtsIMutI	CAGTG	1 cut(s)	546
Cac8I	GCNNGC	1 cut(s)	558
Cfr13I	GGNCC	2 cut(s)	181, 268
Csp6I	GTAC	1 cut(s)	851
CviAII	CATG	4 cut(s)	697, 820, 970, 997
CviQI	GTAC	1 cut(s)	851
DdeI	CTNAG	3 cut(s)	153, 741, 1052
DpnI	GATC	2 cut(s)	666, 753
DpnII	GATC	2 cut(s)	664, 751
DriI	GACNNNNNGTC	1 cut(s)	423
EaeI	YGGCCR	1 cut(s)	362
Eam1104I	CTCTTC	1 cut(s)	697
Eam1105I	GACNNNNNGTC	1 cut(s)	423
EarI	CTCTTC	1 cut(s)	697
Ecl136II	GAGCTC	2 cut(s)	141, 435
Eco130I	CCWWGG	1 cut(s)	819
Eco24I	GRGCYC	2 cut(s)	143, 437
Eco31I	GGTCTC	1 cut(s)	699
Eco47I	GGWCC	2 cut(s)	181, 268
Eco53kI	GAGCTC	2 cut(s)	141, 435
Eco57I	CTGAAG	1 cut(s)	1016
Eco88I	CYCGRG	2 cut(s)	232, 319
EcoICRI	GAGCTC	2 cut(s)	141, 435
EcoRII	CCWGG	2 cut(s)	375, 460
EcoT14I	CCWWGG	1 cut(s)	819
EcoT38I	GRGCYC	2 cut(s)	143, 437
ErhI	CCWWGG	1 cut(s)	819
FaeI	CATG	4 cut(s)	700, 823, 973, 1000
FatI	CATG	4 cut(s)	696, 819, 969, 996
FauI	CCCGC	2 cut(s)	24, 561
Fnu4HI	GCNGC	4 cut(s)	168, 411, 449, 537
FokI	GGATG	1 cut(s)	876
FriOI	GRGCYC	2 cut(s)	143, 437
Fsp4HI	GCNGC	4 cut(s)	168, 411, 449, 537
GluI	GCNGC	4 cut(s)	168, 411, 449, 537
GsaI	CCCAGC	1 cut(s)	609
GsuI	CTGGAG	1 cut(s)	98
HaeIII	GGCC	1 cut(s)	364
HapII	CCGG	1 cut(s)	763
Hin1II	CATG	4 cut(s)	700, 823, 973, 1000
HpaII	CCGG	1 cut(s)	763
HphI	GGTGA	4 cut(s)	412, 542, 761, 925
Hpy166II	GTNNAC	2 cut(s)	794, 935
Hpy188III	TCNNGA	8 cut(s)	77, 232, 234, 241, 319, 321, 328, 1045
Hpy8I	GTNNAC	2 cut(s)	794, 935
Hpy99I	CGWCG	1 cut(s)	370
HpyCH4III	ACNGT	5 cut(s)	338, 344, 400, 568, 1041
HpyCH4V	TGCA	5 cut(s)	539, 858, 905, 1074, 1090
HpyF10VI	GCNNNNNNNGC	4 cut(s)	419, 448, 815, 955
HpyF3I	CTNAG	3 cut(s)	153, 741, 1052
Hsp92II	CATG	4 cut(s)	700, 823, 973, 1000
Kzo9I	GATC	2 cut(s)	664, 751
LmnI	GCTCC	4 cut(s)	79, 123, 139, 653
Lsp1109I	GCAGC	2 cut(s)	460, 523
LweI	GCATC	1 cut(s)	451
MaeIII	GTNAC	5 cut(s)	338, 344, 400, 415, 568
MalI	GATC	2 cut(s)	666, 753
MboI	GATC	2 cut(s)	664, 751
MboII	GAAGA	3 cut(s)	458, 714, 930
MhlI	GDGCHC	4 cut(s)	16, 84, 143, 437
MluCI	AATT	4 cut(s)	106, 673, 685, 802
MlyI	GAGTC	5 cut(s)	209, 296, 344, 433, 1057
MmeI	TCCRAC	7 cut(s)	237, 243, 324, 330, 642, 859, 981
MroXI	GAANNNNTTC	1 cut(s)	1040
MseI	TTAA	4 cut(s)	50, 197, 284, 1023
MspI	CCGG	1 cut(s)	763
MspR9I	CCNGG	2 cut(s)	377, 462
MvaI	CCWGG	2 cut(s)	377, 462
MwoI	GCNNNNNNNGC	4 cut(s)	419, 448, 815, 955
NcoI	CCATGG	1 cut(s)	819
NdeII	GATC	2 cut(s)	664, 751
NlaIII	CATG	4 cut(s)	700, 823, 973, 1000
NlaIV	GGNNCC	6 cut(s)	182, 211, 269, 298, 546, 761
NmuCI	GTSAC	3 cut(s)	338, 400, 415
NspI	RCATGY	1 cut(s)	1000
PaeR7I	CTCGAG	2 cut(s)	232, 319
PciI	ACATGT	1 cut(s)	996
PcsI	WCGNNNNNNNCGW	1 cut(s)	365
PdmI	GAANNNNTTC	1 cut(s)	1040
PfeI	GAWTC	7 cut(s)	56, 237, 324, 356, 642, 766, 845
PfoI	TCCNGGA	1 cut(s)	375
PkrI	GCNGC	4 cut(s)	169, 412, 450, 538
PleI	GAGTC	5 cut(s)	209, 296, 344, 432, 1056
PpsI	GAGTC	5 cut(s)	209, 296, 344, 432, 1056
PscI	ACATGT	1 cut(s)	996
Psp124BI	GAGCTC	2 cut(s)	143, 437
Psp6I	CCWGG	2 cut(s)	375, 460
PspFI	CCCAGC	1 cut(s)	605
PspGI	CCWGG	2 cut(s)	375, 460
PspN4I	GGNNCC	6 cut(s)	182, 211, 269, 298, 546, 761
PspPI	GGNCC	2 cut(s)	181, 268
PstI	CTGCAG	1 cut(s)	541
RsaI	GTAC	1 cut(s)	852
RsaNI	GTAC	1 cut(s)	851
SacI	GAGCTC	2 cut(s)	143, 437
SaqAI	TTAA	4 cut(s)	50, 197, 284, 1023
SatI	GCNGC	4 cut(s)	168, 411, 449, 537
Sau3AI	GATC	2 cut(s)	664, 751
Sau96I	GGNCC	2 cut(s)	181, 268
SchI	GAGTC	5 cut(s)	209, 296, 344, 433, 1057
ScrFI	CCNGG	2 cut(s)	377, 462
SduI	GDGCHC	4 cut(s)	16, 84, 143, 437
SfaNI	GCATC	1 cut(s)	451
SfcI	CTRYAG	2 cut(s)	334, 537
Sfr274I	CTCGAG	2 cut(s)	232, 319
SinI	GGWCC	2 cut(s)	181, 268
SlaI	CTCGAG	2 cut(s)	232, 319
SmlI	CTYRAG	3 cut(s)	232, 319, 787
SmoI	CTYRAG	3 cut(s)	232, 319, 787
Sse9I	AATT	4 cut(s)	106, 673, 685, 802
SsiI	CCGC	4 cut(s)	17, 168, 410, 554
SstI	GAGCTC	2 cut(s)	143, 437
StyD4I	CCNGG	2 cut(s)	375, 460
StyI	CCWWGG	1 cut(s)	819
TaaI	ACNGT	5 cut(s)	338, 344, 400, 568, 1041
TaqI	TCGA	8 cut(s)	201, 233, 288, 320, 368, 384, 895, 1063
TasI	AATT	4 cut(s)	106, 673, 685, 802
TauI	GCSGC	2 cut(s)	170, 413
TfiI	GAWTC	7 cut(s)	56, 237, 324, 356, 642, 766, 845
Tru1I	TTAA	4 cut(s)	50, 197, 284, 1023
Tru9I	TTAA	4 cut(s)	50, 197, 284, 1023
TscAI	CASTG	1 cut(s)	546
TseFI	GTSAC	3 cut(s)	338, 400, 415
TseI	GCWGC	2 cut(s)	448, 536
Tsp45I	GTSAC	3 cut(s)	338, 400, 415
TspDTI	ATGAA	1 cut(s)	758
TspGWI	ACGGA	2 cut(s)	419, 940
TspRI	CASTG	1 cut(s)	546
VpaK11BI	GGWCC	2 cut(s)	181, 268
XapI	RAATTY	2 cut(s)	673, 802
XceI	RCATGY	1 cut(s)	1000
XcmI	CCANNNNNNNNNTGG	2 cut(s)	107, 654
XhoI	CTCGAG	2 cut(s)	232, 319
XmnI	GAANNNNTTC	1 cut(s)	1040

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.