Rmu_sc0002759.1_g000053

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002759.1
Physical Location & Seq
Forward (+)
266857 .. 269065
2209 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002759.1_g000053.1.cds

Sequence Viewer

Length: 1977 bp
atggctgcttcttccttacgagagttgcttacagaagaagcatatcaacgcaggaacaacaacaacaacatgttcgtcgccaaaaccaaaaaaccagtgaagtacagagttgctccagatgagtctctggctttgttgcctatacacatctgccacgatcgaaaaagctacgacttctccaagcacaaggctcaaaactctgttatgcgaaaagggtcgtctagaagagtgagttctacttcagagaggtcgaattccaagacggtggtctcggaaagtagttcgagaagaacagagcctgcggcgcttgatgaagttgccactaaagctgtggtttctattctcagcggatatgcgggtcgttatataaaggacgaggagtttagaggagggattgaggacaagtgtagggcttgtttggcgaggaagaaaagagattcggatagtggagtacttgagactttggaatcaggtgttgaaaatgttaacaagttggtggagaatccagttttttcgatgaaagcactgagaaaatgcattgggaatttgagcagtgttgttgcttctctggatgccaataagtccaagatgaatgcttcgacttgtggtatacccaattcaaatctctctgcttgtgctcagctctacttggcaattgttcacaagcttgagagaaatgacttggtttctgctaagcatttgcttcaagttttctgtgattcaccatttttagcaagaacccatttgcttcctgatctatgggaacatctcttacttccacatcttcttcatctgaagatatggtataccaaggagattgaggttgtttcacactcatttgagaaggagaagagaatcaaatccttaaccaaagtctataatgaccaaatggatttggggactacaaagtttgctcaatactacaaagagtggcttaaatttggggctgaggctcctcctgttgctccagaaatacctctgccttcagtaccaagtagcagatcaagacgacggagagcatccgattctttcgcttcacattcctcattgaacaaaaatttatatcaggctgtgtttggccccacactcgaaaggcggtcagtggaccttgatgatcgaaatggagtttcaattgcttcttgggatgtaaatgaagaggagaagctgtttgaagatgaagctaatgcagacaagtacaacagtctcagttttgttcatagggaagacagtaatggacgaaagtcatcgagccgaagtcatagaaatccaaaaactgagttatggcctgagtctgatcagacaaagaaatcagactattttggattctttagctgccagaatgcacctactgaatgcctagtgaataggaatctcatatttaagagtaattcagttcaacaagaagacaattcccaccttccttcaagcaatttaggcagtgcaatcagtactctttactcgtcggatagtctcagtgattgcgaaattgcagttcgtgcaattaccaaagcttggttggactcacatggtgatcctgtcattgaagccatgttatccgagccacctcttatccagggaatgctggaggtgttgtttgcttccactgatgatgaaattttggaactagtaatatcggttttagctgaatttgtagcaagaaatgagcagaatagaaagataatactgaattttgatccacagcttgaaatcttcatgagacttctaagaagtagtggtctatttttgaaagcagctgttttgctttacctgttgatgccaaaggcaaaacagatgatatcacttgaatgggtggcactagtccttcgagtactcgagtttggagaccagttgcagaccctattcaccgtacgatgcagccctcaagcagcagcgttgtaccttttggaccagcgcctcctaaggaaaaatcaatcttctacgcctcgcttgccagacacccaattgtggtacaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

658

Amino Acids

74.29

Weight (kDa)

8.65

Isoelectric Point (pI)

56.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1512
AccI GTMKAC 2 cut(s) 610, 806
AciI CCGC 4 cut(s) 302, 348, 356, 1096
AclWI GGATC 2 cut(s) 1526, 1688
AcsI RAATTY 7 cut(s) 253, 544, 938, 1057, 1614, 1646, 1687
AcuI CTGAAG 3 cut(s) 225, 815, 969
AdeI CACNNNGTG 1 cut(s) 1529
AfaI GTAC 9 cut(s) 104, 453, 990, 1196, 1450, 1830, 1869, 1898, 1970
AfiI CCNNNNNNNGG 2 cut(s) 1512, 1965
AflIII ACRYGT 1 cut(s) 69
AhlI ACTAGT 2 cut(s) 1624, 1816
AjnI CCWGG 1 cut(s) 1572
Alw21I GWGCWC 1 cut(s) 640
Alw26I GTCTC 7 cut(s) 129, 274, 452, 1208, 1475, 1711, 1836
AlwI GGATC 2 cut(s) 1526, 1688
AlwNI CAGNNNCTG 1 cut(s) 299
Ama87I CYCGRG 1 cut(s) 1832
AoxI GGCC 2 cut(s) 1078, 1283
ApeKI GCWGC 6 cut(s) 5, 1332, 1751, 1875, 1886, 1889
ApoI RAATTY 7 cut(s) 253, 544, 938, 1057, 1614, 1646, 1687
AspLEI GCGC 2 cut(s) 307, 1914
AspS9I GGNCC 3 cut(s) 1079, 1105, 1906
AsuHPI GGTGA 3 cut(s) 714, 1541, 1855
AvaI CYCGRG 1 cut(s) 1832
AvaII GGWCC 2 cut(s) 1105, 1906
AxyI CCTNAGG 1 cut(s) 1919
BbsI GAAGAC 2 cut(s) 1230, 1410
Bbv12I GWGCWC 1 cut(s) 640
BbvCI CCTCAGC 1 cut(s) 948
BbvI GCAGC 5 cut(s) 1319, 1763, 1887, 1898, 1901
BciT130I CCWGG 1 cut(s) 1574
BclI TGATCA 1 cut(s) 1294
BcoDI GTCTC 7 cut(s) 129, 274, 452, 1208, 1475, 1711, 1836
BcuI ACTAGT 2 cut(s) 1624, 1816
BfaI CTAG 4 cut(s) 222, 1358, 1625, 1817
BfoI RGCGCY 2 cut(s) 308, 1915
BisI GCNGC 7 cut(s) 6, 303, 1333, 1752, 1876, 1887, 1890
BlpI GCTNAGC 2 cut(s) 639, 693
BlsI GCNGC 7 cut(s) 7, 304, 1334, 1753, 1877, 1888, 1891
BmcAI AGTACT 3 cut(s) 453, 1450, 1830
Bme1390I CCNGG 1 cut(s) 1574
Bme18I GGWCC 2 cut(s) 1105, 1906
BmeT110I CYCGRG 1 cut(s) 1832
BmgT120I GGNCC 3 cut(s) 1079, 1105, 1906
BmiI GGNNCC 2 cut(s) 954, 1081
BmrFI CCNGG 1 cut(s) 1574
BmsI GCATC 4 cut(s) 562, 1028, 1764, 1862
BoxI GACNNNNGTC 2 cut(s) 266, 1240
BpiI GAAGAC 2 cut(s) 1230, 1410
BpmI CTGGAG 3 cut(s) 99, 951, 1604
Bpu10I CCTNAGC 1 cut(s) 948
Bpu1102I GCTNAGC 2 cut(s) 639, 693
BpuEI CTTGAG 3 cut(s) 476, 689, 1866
BsaI GGTCTC 2 cut(s) 274, 1836
BsaJI CCNNGG 2 cut(s) 810, 1573
BsaXI ACNNNNNCTCC 6 cut(s) 161, 191, 1151, 1181, 1577, 1607
Bsc4I CCNNNNNNNGG 2 cut(s) 1512, 1965
Bse1I ACTGG 3 cut(s) 95, 506, 1846
Bse21I CCTNAGG 1 cut(s) 1919
BseBI CCWGG 1 cut(s) 1574
BseDI CCNNGG 2 cut(s) 810, 1573
BseGI GGATG 3 cut(s) 577, 1019, 1150
BseLI CCNNNNNNNGG 2 cut(s) 1512, 1965
BseMII CTCAG 8 cut(s) 358, 518, 653, 939, 1219, 1266, 1278, 1486
BseNI ACTGG 3 cut(s) 95, 506, 1846
BseRI GAGGAG 4 cut(s) 392, 402, 945, 1172
BseXI GCAGC 5 cut(s) 1319, 1763, 1887, 1898, 1901
Bsh1285I CGRYCG 1 cut(s) 160
BshFI GGCC 2 cut(s) 1080, 1285
BsiEI CGRYCG 1 cut(s) 160
BsiHKAI GWGCWC 1 cut(s) 640
BsiHKCI CYCGRG 1 cut(s) 1832
BsiWI CGTACG 1 cut(s) 1867
BslFI GGGAC 1 cut(s) 913
BslI CCNNNNNNNGG 2 cut(s) 1512, 1965
BsmAI GTCTC 7 cut(s) 129, 274, 452, 1208, 1475, 1711, 1836
BsmFI GGGAC 1 cut(s) 913
BsmI GAATGC 4 cut(s) 598, 1345, 1358, 1584
BsnI GGCC 2 cut(s) 1080, 1285
Bso31I GGTCTC 2 cut(s) 274, 1836
BsoBI CYCGRG 1 cut(s) 1832
Bsp1286I GDGCHC 1 cut(s) 640
Bsp143I GATC 7 cut(s) 157, 754, 1001, 1114, 1294, 1531, 1693
Bsp1720I GCTNAGC 2 cut(s) 639, 693
BspACI CCGC 4 cut(s) 302, 348, 356, 1096
BspANI GGCC 2 cut(s) 1080, 1285
BspCNI CTCAG 8 cut(s) 357, 519, 652, 940, 1218, 1267, 1279, 1485
BspHI TCATGA 1 cut(s) 1713
BspLI GGNNCC 2 cut(s) 954, 1081
BspPI GGATC 2 cut(s) 1526, 1688
BspTNI GGTCTC 2 cut(s) 274, 1836
BsrI ACTGG 3 cut(s) 95, 506, 1846
BssECI CCNNGG 2 cut(s) 810, 1573
BssMI GATC 7 cut(s) 157, 754, 1001, 1114, 1294, 1531, 1693
BssNAI GTATAC 2 cut(s) 611, 807
BssT1I CCWWGG 1 cut(s) 810
Bst1107I GTATAC 2 cut(s) 611, 807
Bst2UI CCWGG 1 cut(s) 1574
Bst4CI ACNGT 4 cut(s) 265, 1202, 1229, 1867
Bst6I CTCTTC 3 cut(s) 220, 845, 1149
BstAPI GCANNNNNTGC 1 cut(s) 1496
BstC8I GCNNGC 2 cut(s) 300, 1949
BstF5I GGATG 3 cut(s) 577, 1019, 1150
BstH2I RGCGCY 2 cut(s) 308, 1915
BstHHI GCGC 2 cut(s) 307, 1914
BstKTI GATC 7 cut(s) 160, 757, 1004, 1117, 1297, 1534, 1696
BstMAI GTCTC 7 cut(s) 129, 274, 452, 1208, 1475, 1711, 1836
BstMBI GATC 7 cut(s) 157, 754, 1001, 1114, 1294, 1531, 1693
BstMCI CGRYCG 1 cut(s) 160
BstMWI GCNNNNNNNGC 6 cut(s) 304, 326, 419, 1434, 1496, 1948
BstNI CCWGG 1 cut(s) 1574
BstNSI RCATGY 1 cut(s) 73
BstPAI GACNNNNGTC 2 cut(s) 266, 1240
BstSCI CCNGG 1 cut(s) 1572
BstV1I GCAGC 5 cut(s) 1319, 1763, 1887, 1898, 1901
BstV2I GAAGAC 2 cut(s) 1230, 1410
BstXI CCANNNNNNTGG 1 cut(s) 265
BstZ17I GTATAC 2 cut(s) 611, 807
Bsu36I CCTNAGG 1 cut(s) 1919
BsuRI GGCC 2 cut(s) 1080, 1285
BtsCI GGATG 3 cut(s) 577, 1019, 1150
BtsI GCAGTG 2 cut(s) 559, 1444
BtsIMutI CAGTG 7 cut(s) 102, 524, 559, 1107, 1444, 1480, 1602
Cac8I GCNNGC 2 cut(s) 300, 1949
CaiI CAGNNNCTG 1 cut(s) 299
CciI TCATGA 1 cut(s) 1713
CfoI GCGC 2 cut(s) 307, 1914
Cfr13I GGNCC 3 cut(s) 1079, 1105, 1906
Csp6I GTAC 9 cut(s) 103, 452, 989, 1195, 1449, 1829, 1868, 1897, 1969
CviAII CATG 4 cut(s) 70, 1526, 1549, 1714
CviQI GTAC 9 cut(s) 103, 452, 989, 1195, 1449, 1829, 1868, 1897, 1969
DpnI GATC 7 cut(s) 159, 756, 1003, 1116, 1296, 1533, 1695
DpnII GATC 7 cut(s) 157, 754, 1001, 1114, 1294, 1531, 1693
DraIII CACNNNGTG 1 cut(s) 1529
Eam1104I CTCTTC 3 cut(s) 220, 845, 1149
EarI CTCTTC 3 cut(s) 220, 845, 1149
Eco130I CCWWGG 1 cut(s) 810
Eco31I GGTCTC 2 cut(s) 274, 1836
Eco32I GATATC 1 cut(s) 1797
Eco47I GGWCC 2 cut(s) 1105, 1906
Eco57I CTGAAG 3 cut(s) 225, 815, 969
Eco81I CCTNAGG 1 cut(s) 1919
Eco88I CYCGRG 1 cut(s) 1832
EcoRI GAATTC 1 cut(s) 253
EcoRII CCWGG 1 cut(s) 1572
EcoRV GATATC 1 cut(s) 1797
EcoT14I CCWWGG 1 cut(s) 810
EcoT22I ATGCAT 1 cut(s) 539
ErhI CCWWGG 1 cut(s) 810
FaeI CATG 4 cut(s) 73, 1529, 1552, 1717
FalI AAGNNNNNCTT 2 cut(s) 918, 950
FaqI GGGAC 1 cut(s) 913
FatI CATG 4 cut(s) 69, 1525, 1548, 1713
FauI CCCGC 1 cut(s) 349
FbaI TGATCA 1 cut(s) 1294
FblI GTMKAC 2 cut(s) 610, 806
Fnu4HI GCNGC 7 cut(s) 6, 303, 1333, 1752, 1876, 1887, 1890
FokI GGATG 3 cut(s) 584, 1006, 1157
Fsp4HI GCNGC 7 cut(s) 6, 303, 1333, 1752, 1876, 1887, 1890
FspBI CTAG 4 cut(s) 222, 1358, 1625, 1817
GlaI GCGC 2 cut(s) 306, 1913
GluI GCNGC 7 cut(s) 6, 303, 1333, 1752, 1876, 1887, 1890
GsuI CTGGAG 3 cut(s) 99, 951, 1604
HaeII RGCGCY 2 cut(s) 308, 1915
HaeIII GGCC 2 cut(s) 1080, 1285
HhaI GCGC 2 cut(s) 307, 1914
Hin1II CATG 4 cut(s) 73, 1529, 1552, 1717
Hin6I GCGC 2 cut(s) 305, 1912
HinP1I GCGC 2 cut(s) 305, 1912
HincII GTYRAC 1 cut(s) 487
HindII GTYRAC 1 cut(s) 487
HindIII AAGCTT 2 cut(s) 665, 1509
HpaI GTTAAC 1 cut(s) 487
HphI GGTGA 3 cut(s) 714, 1541, 1855
Hpy166II GTNNAC 5 cut(s) 487, 611, 661, 807, 1105
Hpy188III TCNNGA 8 cut(s) 116, 222, 285, 569, 752, 968, 1005, 1714
Hpy8I GTNNAC 5 cut(s) 487, 611, 661, 807, 1105
Hpy99I CGWCG 3 cut(s) 80, 1014, 1465
HpyAV CCTTC 5 cut(s) 838, 993, 1427, 1431, 1832
HpyCH4III ACNGT 4 cut(s) 265, 1202, 1229, 1867
HpyCH4V TGCA 8 cut(s) 537, 1187, 1343, 1442, 1490, 1499, 1852, 1875
HpyF10VI GCNNNNNNNGC 6 cut(s) 304, 326, 419, 1434, 1496, 1948
Hsp92II CATG 4 cut(s) 73, 1529, 1552, 1717
HspAI GCGC 2 cut(s) 305, 1912
Ksp22I TGATCA 1 cut(s) 1294
KspAI GTTAAC 1 cut(s) 487
Kzo9I GATC 7 cut(s) 157, 754, 1001, 1114, 1294, 1531, 1693
LmnI GCTCC 3 cut(s) 118, 958, 970
Lsp1109I GCAGC 5 cut(s) 1319, 1763, 1887, 1898, 1901
LweI GCATC 4 cut(s) 562, 1028, 1764, 1862
MaeI CTAG 4 cut(s) 222, 1358, 1625, 1817
MalI GATC 7 cut(s) 159, 756, 1003, 1116, 1296, 1533, 1695
MboI GATC 7 cut(s) 157, 754, 1001, 1114, 1294, 1531, 1693
MfeI CAATTG 3 cut(s) 654, 1131, 1961
MhlI GDGCHC 1 cut(s) 640
MlyI GAGTC 3 cut(s) 131, 1298, 1514
MmeI TCCRAC 2 cut(s) 1443, 1497
Mph1103I ATGCAT 1 cut(s) 539
MseI TTAA 4 cut(s) 486, 866, 936, 1380
MslI CAYNNNNRTG 1 cut(s) 1804
MspA1I CMGCKG 2 cut(s) 348, 1754
MspR9I CCNGG 1 cut(s) 1574
MunI CAATTG 3 cut(s) 654, 1131, 1961
Mva1269I GAATGC 4 cut(s) 598, 1345, 1358, 1584
MvaI CCWGG 1 cut(s) 1574
MwoI GCNNNNNNNGC 6 cut(s) 304, 326, 419, 1434, 1496, 1948
NdeII GATC 7 cut(s) 157, 754, 1001, 1114, 1294, 1531, 1693
NlaIII CATG 4 cut(s) 73, 1529, 1552, 1717
NlaIV GGNNCC 2 cut(s) 954, 1081
NsiI ATGCAT 1 cut(s) 539
NspI RCATGY 1 cut(s) 73
PaeR7I CTCGAG 1 cut(s) 1832
PagI TCATGA 1 cut(s) 1713
PciI ACATGT 1 cut(s) 69
PctI GAATGC 4 cut(s) 598, 1345, 1358, 1584
PfeI GAWTC 8 cut(s) 437, 467, 502, 719, 855, 1025, 1323, 1369
Pfl23II CGTACG 1 cut(s) 1867
PflMI CCANNNNNTGG 1 cut(s) 1512
PkrI GCNGC 7 cut(s) 7, 304, 1334, 1753, 1877, 1888, 1891
Ple19I CGATCG 1 cut(s) 160
PleI GAGTC 3 cut(s) 130, 1297, 1514
PpsI GAGTC 3 cut(s) 130, 1297, 1514
PscI ACATGT 1 cut(s) 69
PshAI GACNNNNGTC 2 cut(s) 266, 1240
Psp6I CCWGG 1 cut(s) 1572
PspGI CCWGG 1 cut(s) 1572
PspLI CGTACG 1 cut(s) 1867
PspN4I GGNNCC 2 cut(s) 954, 1081
PspPI GGNCC 3 cut(s) 1079, 1105, 1906
PspXI VCTCGAGB 1 cut(s) 1832
PsrI GAACNNNNNNTAC 2 cut(s) 756, 788
PstNI CAGNNNCTG 1 cut(s) 299
PvuI CGATCG 1 cut(s) 160
PvuII CAGCTG 1 cut(s) 1754
RsaI GTAC 9 cut(s) 104, 453, 990, 1196, 1450, 1830, 1869, 1898, 1970
RsaNI GTAC 9 cut(s) 103, 452, 989, 1195, 1449, 1829, 1868, 1897, 1969
RseI CAYNNNNRTG 1 cut(s) 1804
SaqAI TTAA 4 cut(s) 486, 866, 936, 1380
SatI GCNGC 7 cut(s) 6, 303, 1333, 1752, 1876, 1887, 1890
Sau3AI GATC 7 cut(s) 157, 754, 1001, 1114, 1294, 1531, 1693
Sau96I GGNCC 3 cut(s) 1079, 1105, 1906
ScaI AGTACT 3 cut(s) 453, 1450, 1830
SchI GAGTC 3 cut(s) 131, 1298, 1514
ScrFI CCNGG 1 cut(s) 1574
SduI GDGCHC 1 cut(s) 640
SfaNI GCATC 4 cut(s) 562, 1028, 1764, 1862
Sfr274I CTCGAG 1 cut(s) 1832
SinI GGWCC 2 cut(s) 1105, 1906
SlaI CTCGAG 1 cut(s) 1832
SmiMI CAYNNNNRTG 1 cut(s) 1804
SmlI CTYRAG 4 cut(s) 455, 668, 1832, 1881
SmoI CTYRAG 4 cut(s) 455, 668, 1832, 1881
SpeI ACTAGT 2 cut(s) 1624, 1816
SsiI CCGC 4 cut(s) 302, 348, 356, 1096
SspMI CTAG 4 cut(s) 222, 1358, 1625, 1817
StyD4I CCNGG 1 cut(s) 1572
StyI CCWWGG 1 cut(s) 810
TaaI ACNGT 4 cut(s) 265, 1202, 1229, 1867
TatI WGTACW 5 cut(s) 102, 451, 1194, 1448, 1828
TauI GCSGC 1 cut(s) 305
TfiI GAWTC 8 cut(s) 437, 467, 502, 719, 855, 1025, 1323, 1369
Tru1I TTAA 4 cut(s) 486, 866, 936, 1380
Tru9I TTAA 4 cut(s) 486, 866, 936, 1380
TscAI CASTG 7 cut(s) 102, 531, 559, 1107, 1444, 1480, 1609
TseI GCWGC 6 cut(s) 5, 1332, 1751, 1875, 1886, 1889
TspDTI ATGAA 9 cut(s) 327, 533, 605, 779, 1167, 1191, 1205, 1626, 1702
TspGWI ACGGA 1 cut(s) 1027
TspRI CASTG 7 cut(s) 102, 531, 559, 1107, 1444, 1480, 1609
Van91I CCANNNNNTGG 1 cut(s) 1512
VpaK11BI GGWCC 2 cut(s) 1105, 1906
XapI RAATTY 7 cut(s) 253, 544, 938, 1057, 1614, 1646, 1687
XbaI TCTAGA 1 cut(s) 221
XceI RCATGY 1 cut(s) 73
XcmI CCANNNNNNNNNTGG 2 cut(s) 328, 1513
XhoI CTCGAG 1 cut(s) 1832
XmiI GTMKAC 2 cut(s) 610, 806
XspI CTAG 4 cut(s) 222, 1358, 1625, 1817
ZrmI AGTACT 3 cut(s) 453, 1450, 1830
Zsp2I ATGCAT 1 cut(s) 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.