Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006392

Physical Location & Seq

Genomic Coordinates Forward (+)

4543186 .. 4543371

Gene Structure 186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0051800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

ATGGGAAAAATGGGACCTTGCCTATGGGTTTATAAGGGTTTGGGTCACTCCATCCATTGCCAATTGGTTTTGGATGTGAACCCCAGATTACTTTATCATGGTATCAGAGCGGGTTATCCCACGTGTGCACGCCTCGCGGCCATACGGGCTCCACGTCACCCAAAGTTGTCCACGTGTATGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

61

Amino Acids

6.74

Weight (kDa)

9.84

Isoelectric Point (pI)

24.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006392)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g11960 FvH4_3g11960 FvH4_3g11960 FvH4_3g11960 FvH4_3g11960
malus_domestica	MD05G1256200.v1.1 MD10G1236500.v1.1 MD10G1236600.v1.1
prunus_persica	Prupe.4G107900_v2.0.a1 Prupe.4G107900_v2.0.a1 Prupe.4G107900_v2.0.a1
pyrus_communis	pycom05g23530 pycom10g19790
rosa_chinensis	RchiOBHm_Chr5g0019541
rosa_laevigata	RLG00000032455
rosa_multiflora	Rmu_co8318911.1_g000001 Rmu_sc0002759.1_g000051 Rmu_sc0002759.1_g000053
rosa_roxburghii	Rroxscaffold_1G00058520
rosa_rugosa	Rorug05G0051700 Rorug05G0051800 Rorug05G0051900
rosa_samantha	Rh5AG142500 Rh5BG140900 Rh5CG153000 Rh5DG141600
rosa_wichuraiana	Rw5G012610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	33
AccBSI	CCGCTC	1 cut(s)	110
AccII	CGCG	1 cut(s)	137
AciI	CCGC	2 cut(s)	110, 137
AcoI	YGGCCR	1 cut(s)	138
AcvI	CACGTG	2 cut(s)	123, 174
AflIII	ACRYGT	2 cut(s)	122, 173
AjiI	CACGTC	1 cut(s)	155
Alw21I	GWGCWC	1 cut(s)	130
Alw44I	GTGCAC	1 cut(s)	126
AoxI	GGCC	1 cut(s)	138
ApaLI	GTGCAC	1 cut(s)	126
AspS9I	GGNCC	1 cut(s)	14
AsuHPI	GGTGA	1 cut(s)	149
AvaII	GGWCC	1 cut(s)	14
BaeGI	GKGCMC	1 cut(s)	130
BanII	GRGCYC	1 cut(s)	151
BbrPI	CACGTG	2 cut(s)	123, 174
Bbv12I	GWGCWC	1 cut(s)	130
BccI	CCATC	1 cut(s)	59
BglI	GCCNNNNNGGC	1 cut(s)	146
BisI	GCNGC	1 cut(s)	138
BlsI	GCNGC	1 cut(s)	139
Bme18I	GGWCC	1 cut(s)	14
BmgBI	CACGTC	1 cut(s)	155
BmgT120I	GGNCC	1 cut(s)	14
BmiI	GGNNCC	2 cut(s)	15, 150
BsaAI	YACGTR	2 cut(s)	123, 174
Bse3DI	GCAATG	1 cut(s)	55
BseGI	GGATG	2 cut(s)	51, 79
BseMI	GCAATG	1 cut(s)	55
BseSI	GKGCMC	1 cut(s)	130
Bsh1236I	CGCG	1 cut(s)	137
BshFI	GGCC	1 cut(s)	140
BsiHKAI	GWGCWC	1 cut(s)	130
BslFI	GGGAC	1 cut(s)	27
BsmFI	GGGAC	1 cut(s)	27
BsnI	GGCC	1 cut(s)	140
Bsp1286I	GDGCHC	2 cut(s)	130, 151
BspACI	CCGC	2 cut(s)	110, 137
BspANI	GGCC	1 cut(s)	140
BspFNI	CGCG	1 cut(s)	137
BspLI	GGNNCC	2 cut(s)	15, 150
BsrBI	CCGCTC	1 cut(s)	110
BsrDI	GCAATG	1 cut(s)	55
BstBAI	YACGTR	2 cut(s)	123, 174
BstC8I	GCNNGC	1 cut(s)	130
BstF5I	GGATG	2 cut(s)	51, 79
BstFNI	CGCG	1 cut(s)	137
BstMWI	GCNNNNNNNGC	2 cut(s)	134, 146
BstSLI	GKGCMC	1 cut(s)	130
BstUI	CGCG	1 cut(s)	137
BstXI	CCANNNNNNTGG	1 cut(s)	178
BsuRI	GGCC	1 cut(s)	140
BtrI	CACGTC	1 cut(s)	155
BtsCI	GGATG	2 cut(s)	51, 79
Cac8I	GCNNGC	1 cut(s)	130
Cfr13I	GGNCC	1 cut(s)	14
CviAII	CATG	1 cut(s)	98
CviJI	RGCY	3 cut(s)	140, 149, 182
CviKI_1	RGCY	3 cut(s)	140, 149, 182
EaeI	YGGCCR	1 cut(s)	138
Eco24I	GRGCYC	1 cut(s)	151
Eco47I	GGWCC	1 cut(s)	14
Eco72I	CACGTG	2 cut(s)	123, 174
EcoO109I	RGGNCCY	1 cut(s)	14
EcoT38I	GRGCYC	1 cut(s)	151
FaeI	CATG	1 cut(s)	101
FaiI	YATR	5 cut(s)	25, 33, 99, 143, 179
FaqI	GGGAC	1 cut(s)	27
FatI	CATG	1 cut(s)	97
FauI	CCCGC	1 cut(s)	103
Fnu4HI	GCNGC	1 cut(s)	138
FokI	GGATG	2 cut(s)	38, 86
FriOI	GRGCYC	1 cut(s)	151
Fsp4HI	GCNGC	1 cut(s)	138
GluI	GCNGC	1 cut(s)	138
HaeIII	GGCC	1 cut(s)	140
Hin1II	CATG	1 cut(s)	101
HphI	GGTGA	1 cut(s)	149
Hpy166II	GTNNAC	3 cut(s)	79, 128, 171
Hpy188I	TCNGA	1 cut(s)	107
Hpy8I	GTNNAC	3 cut(s)	79, 128, 171
HpyCH4IV	ACGT	3 cut(s)	122, 154, 173
HpyCH4V	TGCA	1 cut(s)	128
HpyF10VI	GCNNNNNNNGC	2 cut(s)	134, 146
HpySE526I	ACGT	3 cut(s)	122, 154, 173
Hsp92II	CATG	1 cut(s)	101
LmnI	GCTCC	1 cut(s)	154
LpnPI	CCDG	1 cut(s)	97
MaeII	ACGT	3 cut(s)	122, 154, 173
MaeIII	GTNAC	2 cut(s)	44, 155
MbiI	CCGCTC	1 cut(s)	110
MfeI	CAATTG	1 cut(s)	62
MhlI	GDGCHC	2 cut(s)	130, 151
MluCI	AATT	1 cut(s)	62
MnlI	CCTC	1 cut(s)	143
MslI	CAYNNNNRTG	1 cut(s)	176
MunI	CAATTG	1 cut(s)	62
MvnI	CGCG	1 cut(s)	137
MwoI	GCNNNNNNNGC	2 cut(s)	134, 146
NlaIII	CATG	1 cut(s)	101
NlaIV	GGNNCC	2 cut(s)	15, 150
NmuCI	GTSAC	2 cut(s)	44, 155
PcsI	WCGNNNNNNNCGW	1 cut(s)	151
PkrI	GCNGC	1 cut(s)	139
PmaCI	CACGTG	2 cut(s)	123, 174
PmlI	CACGTG	2 cut(s)	123, 174
Ppu21I	YACGTR	2 cut(s)	123, 174
PpuMI	RGGWCCY	1 cut(s)	14
PsiI	TTATAA	1 cut(s)	33
Psp5II	RGGWCCY	1 cut(s)	14
PspCI	CACGTG	2 cut(s)	123, 174
PspN4I	GGNNCC	2 cut(s)	15, 150
PspPI	GGNCC	1 cut(s)	14
PspPPI	RGGWCCY	1 cut(s)	14
RseI	CAYNNNNRTG	1 cut(s)	176
SatI	GCNGC	1 cut(s)	138
Sau96I	GGNCC	1 cut(s)	14
SduI	GDGCHC	2 cut(s)	130, 151
SetI	ASST	4 cut(s)	19, 125, 157, 176
SinI	GGWCC	1 cut(s)	14
SmiMI	CAYNNNNRTG	1 cut(s)	176
Sse9I	AATT	1 cut(s)	62
SsiI	CCGC	2 cut(s)	110, 137
TaiI	ACGT	3 cut(s)	125, 157, 176
TasI	AATT	1 cut(s)	62
TauI	GCSGC	1 cut(s)	140
TseFI	GTSAC	2 cut(s)	44, 155
Tsp45I	GTSAC	2 cut(s)	44, 155
VneI	GTGCAC	1 cut(s)	126
VpaK11BI	GGWCC	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.