Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003012.1

Orthogroup ID

OG0017978

Physical Location & Seq

Genomic Coordinates Reverse (-)

22598 .. 23803

Gene Structure 1206 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003012.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

atgctaatcgcatcatctgaatatggtgatggatttttggtcaaagctgagactcgaatgacggtttggccaagtaatgcatatgaaggccactctgcaatctcattaatggagaacgatattcggaagcttcctcaagagttgaccaacctccaggcattatatttagatgattgcaatttaataagcaatgtttctctactaggagagctgaagaaacttgaaattcttagcttgagaaaatcagaccttgaggaattacctgatgaaatagtaaatttgactaagctaagaatgcttgatcttagtgggagtgggtcaattaagagaattccatccaatttgatatcaaggctgtctaggttagaggaactgtacatgcgagttagttttaaggactgggggagtaaagttgatcgagaaggagaagaaaccaatattggatttgatgagttgattcgcctgtcatacttgaacattttggaggttgacgcaatggatgcaaagggctggcctaaggatgttagctttaatcccatttgggtaaaatttaacatacgcgtcggagatcacattttgagtattggtgaattcgcaatgtctcattgggagaattggctcttaacacaagttcccaattcaggagtactgggcctgaacacaaccattaacaccttgcccagttggttcaatagcgctgttacccaaagagcccagaaactttggtacacaaagtcccagggcataaataacattctagtggaatatgaccatggaaatttattcaaacttgagtgtttagttatccgagattgctataaagttgtaactttgatggacacaacagcaagggttccaatagtgaataaacctgtgttcgagaatctcaaagtcatgtgggtgatgaatttgaataatttgaaagagttgtgtgtcagtgaattaccacaagggtctctaggcaatctgcagtctttgacggtgagaagatgttataagttgttgaatccacttcttccaacaaatttgttgcaaaaattacaaaatctaaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC TIR

Protein Analysis

351

Amino Acids

40.05

Weight (kDa)

5.94

Isoelectric Point (pI)

34.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017978)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05722
rosa_multiflora	Rmu_sc0003012.1_g000003
rosa_roxburghii	Rroxscaffold_2G00076990 Rroxscaffold_2G00101150 Rroxscaffold_2G00101160 Rroxscaffold_3G00238020 Rroxscaffold_5G00341310 Rroxscaffold_5G00341320 Rroxscaffold_5G00383400 Rroxscaffold_7G00209180
rosa_wichuraiana	Rw6G007470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	996
AccII	CGCG	1 cut(s)	561
AcoI	YGGCCR	1 cut(s)	68
AcsI	RAATTY	8 cut(s)	225, 277, 330, 548, 590, 778, 907, 1024
AcuI	CTGAAG	1 cut(s)	233
AfaI	GTAC	3 cut(s)	377, 648, 728
AfeI	AGCGCT	1 cut(s)	697
AfiI	CCNNNNNNNGG	1 cut(s)	641
AflIII	ACRYGT	1 cut(s)	559
AgsI	TTSAA	7 cut(s)	224, 475, 691, 787, 913, 922, 1006
AjnI	CCWGG	2 cut(s)	153, 738
AjuI	GAANNNNNNNTTGG	4 cut(s)	49, 81, 423, 455
AluBI	AGCT	6 cut(s)	47, 130, 211, 234, 289, 528
AluI	AGCT	6 cut(s)	47, 130, 211, 234, 289, 528
Alw26I	GTCTC	3 cut(s)	44, 606, 960
Aor51HI	AGCGCT	1 cut(s)	697
AoxI	GGCC	4 cut(s)	68, 88, 512, 652
ApoI	RAATTY	8 cut(s)	225, 277, 330, 548, 590, 778, 907, 1024
AseI	ATTAAT	1 cut(s)	107
AspLEI	GCGC	1 cut(s)	698
AspS9I	GGNCC	1 cut(s)	652
AsuHPI	GGTGA	4 cut(s)	38, 599, 913, 994
AxyI	CCTNAGG	1 cut(s)	516
BalI	TGGCCA	1 cut(s)	70
BanII	GRGCYC	1 cut(s)	715
BccI	CCATC	3 cut(s)	23, 343, 829
BciT130I	CCWGG	2 cut(s)	155, 740
BcoDI	GTCTC	3 cut(s)	44, 606, 960
BfaI	CTAG	4 cut(s)	203, 360, 758, 959
BfmI	CTRYAG	1 cut(s)	968
BfoI	RGCGCY	1 cut(s)	699
BmcAI	AGTACT	1 cut(s)	648
Bme1390I	CCNGG	2 cut(s)	155, 740
BmgT120I	GGNCC	1 cut(s)	652
BmiI	GGNNCC	1 cut(s)	855
BmrFI	CCNGG	2 cut(s)	155, 740
BmrI	ACTGGG	3 cut(s)	409, 659, 675
BmsI	GCATC	2 cut(s)	20, 490
BmuI	ACTGGG	3 cut(s)	409, 659, 675
BpmI	CTGGAG	1 cut(s)	137
BpuEI	CTTGAG	4 cut(s)	120, 256, 272, 812
BsaI	GGTCTC	1 cut(s)	960
BsaJI	CCNNGG	3 cut(s)	738, 739, 772
Bsc4I	CCNNNNNNNGG	1 cut(s)	641
Bse1I	ACTGG	3 cut(s)	404, 654, 681
Bse21I	CCTNAGG	1 cut(s)	516
Bse3DI	GCAATG	3 cut(s)	196, 501, 603
BseBI	CCWGG	2 cut(s)	155, 740
BseDI	CCNNGG	3 cut(s)	738, 739, 772
BseGI	GGATG	3 cut(s)	335, 505, 526
BseLI	CCNNNNNNNGG	1 cut(s)	641
BseMI	GCAATG	3 cut(s)	196, 501, 603
BseMII	CTCAG	1 cut(s)	39
BseNI	ACTGG	3 cut(s)	404, 654, 681
Bsh1236I	CGCG	1 cut(s)	561
BshFI	GGCC	4 cut(s)	70, 90, 514, 654
BslFI	GGGAC	1 cut(s)	721
BslI	CCNNNNNNNGG	1 cut(s)	641
BsmAI	GTCTC	3 cut(s)	44, 606, 960
BsmFI	GGGAC	1 cut(s)	721
BsmI	GAATGC	1 cut(s)	300
BsnI	GGCC	4 cut(s)	70, 90, 514, 654
Bso31I	GGTCTC	1 cut(s)	960
Bsp1286I	GDGCHC	1 cut(s)	715
Bsp1407I	TGTACA	1 cut(s)	375
Bsp143I	GATC	3 cut(s)	301, 415, 568
Bsp19I	CCATGG	1 cut(s)	772
BspANI	GGCC	4 cut(s)	70, 90, 514, 654
BspCNI	CTCAG	1 cut(s)	40
BspFNI	CGCG	1 cut(s)	561
BspLI	GGNNCC	1 cut(s)	855
BspMAI	CTGCAG	1 cut(s)	972
BspTNI	GGTCTC	1 cut(s)	960
BsrDI	GCAATG	3 cut(s)	196, 501, 603
BsrGI	TGTACA	1 cut(s)	375
BsrI	ACTGG	3 cut(s)	404, 654, 681
BssECI	CCNNGG	3 cut(s)	738, 739, 772
BssMI	GATC	3 cut(s)	301, 415, 568
BssT1I	CCWWGG	1 cut(s)	772
Bst2UI	CCWGG	2 cut(s)	155, 740
Bst4CI	ACNGT	3 cut(s)	64, 375, 982
BstAPI	GCANNNNNTGC	1 cut(s)	500
BstAUI	TGTACA	1 cut(s)	375
BstC8I	GCNNGC	1 cut(s)	512
BstDEI	CTNAG	6 cut(s)	48, 230, 285, 290, 305, 516
BstDSI	CCRYGG	1 cut(s)	772
BstF5I	GGATG	3 cut(s)	335, 505, 526
BstFNI	CGCG	1 cut(s)	561
BstH2I	RGCGCY	1 cut(s)	699
BstHHI	GCGC	1 cut(s)	698
BstKTI	GATC	3 cut(s)	304, 418, 571
BstMAI	GTCTC	3 cut(s)	44, 606, 960
BstMBI	GATC	3 cut(s)	301, 415, 568
BstMWI	GCNNNNNNNGC	2 cut(s)	295, 500
BstNI	CCWGG	2 cut(s)	155, 740
BstNSI	RCATGY	1 cut(s)	382
BstSCI	CCNGG	2 cut(s)	153, 738
BstSFI	CTRYAG	1 cut(s)	968
BstUI	CGCG	1 cut(s)	561
Bsu36I	CCTNAGG	1 cut(s)	516
BsuRI	GGCC	4 cut(s)	70, 90, 514, 654
BtgI	CCRYGG	1 cut(s)	772
BtsCI	GGATG	3 cut(s)	335, 505, 526
BtsIMutI	CAGTG	1 cut(s)	943
Cac8I	GCNNGC	1 cut(s)	512
CfoI	GCGC	1 cut(s)	698
Cfr13I	GGNCC	1 cut(s)	652
CseI	GACGC	2 cut(s)	500, 550
Csp6I	GTAC	3 cut(s)	376, 647, 727
CviAII	CATG	3 cut(s)	379, 773, 895
CviQI	GTAC	3 cut(s)	376, 647, 727
DdeI	CTNAG	6 cut(s)	48, 230, 285, 290, 305, 516
DpnI	GATC	3 cut(s)	303, 417, 570
DpnII	GATC	3 cut(s)	301, 415, 568
EaeI	YGGCCR	1 cut(s)	68
Eco130I	CCWWGG	1 cut(s)	772
Eco24I	GRGCYC	1 cut(s)	715
Eco31I	GGTCTC	1 cut(s)	960
Eco32I	GATATC	1 cut(s)	348
Eco47III	AGCGCT	1 cut(s)	697
Eco57I	CTGAAG	1 cut(s)	233
Eco81I	CCTNAGG	1 cut(s)	516
EcoRI	GAATTC	2 cut(s)	330, 590
EcoRII	CCWGG	2 cut(s)	153, 738
EcoRV	GATATC	1 cut(s)	348
EcoT14I	CCWWGG	1 cut(s)	772
EcoT22I	ATGCAT	1 cut(s)	82
EcoT38I	GRGCYC	1 cut(s)	715
ErhI	CCWWGG	1 cut(s)	772
FaeI	CATG	3 cut(s)	382, 776, 898
FaqI	GGGAC	1 cut(s)	721
FatI	CATG	3 cut(s)	378, 772, 894
FauNDI	CATATG	1 cut(s)	82
FokI	GGATG	3 cut(s)	322, 512, 533
FriOI	GRGCYC	1 cut(s)	715
FspBI	CTAG	4 cut(s)	203, 360, 758, 959
GlaI	GCGC	1 cut(s)	697
GsuI	CTGGAG	1 cut(s)	137
HaeII	RGCGCY	1 cut(s)	699
HaeIII	GGCC	4 cut(s)	70, 90, 514, 654
HgaI	GACGC	2 cut(s)	500, 550
HhaI	GCGC	1 cut(s)	698
Hin1II	CATG	3 cut(s)	382, 776, 898
Hin6I	GCGC	1 cut(s)	696
HinP1I	GCGC	1 cut(s)	696
HincII	GTYRAC	2 cut(s)	144, 490
HindII	GTYRAC	2 cut(s)	144, 490
HindIII	AAGCTT	1 cut(s)	128
HinfI	GANTC	4 cut(s)	52, 457, 883, 1006
HphI	GGTGA	4 cut(s)	38, 599, 913, 994
Hpy166II	GTNNAC	3 cut(s)	144, 490, 729
Hpy188I	TCNGA	5 cut(s)	19, 126, 247, 566, 809
Hpy188III	TCNNGA	4 cut(s)	137, 419, 642, 880
Hpy8I	GTNNAC	3 cut(s)	144, 490, 729
Hpy99I	CGWCG	1 cut(s)	566
HpyAV	CCTTC	2 cut(s)	80, 416
HpyCH4III	ACNGT	3 cut(s)	64, 375, 982
HpyCH4V	TGCA	6 cut(s)	80, 98, 177, 503, 970, 1033
HpyF10VI	GCNNNNNNNGC	2 cut(s)	295, 500
HpyF3I	CTNAG	6 cut(s)	48, 230, 285, 290, 305, 516
Hsp92II	CATG	3 cut(s)	382, 776, 898
HspAI	GCGC	1 cut(s)	696
Kzo9I	GATC	3 cut(s)	301, 415, 568
LweI	GCATC	2 cut(s)	20, 490
MaeI	CTAG	4 cut(s)	203, 360, 758, 959
MaeIII	GTNAC	2 cut(s)	700, 826
MalI	GATC	3 cut(s)	303, 417, 570
MboI	GATC	3 cut(s)	301, 415, 568
MboII	GAAGA	4 cut(s)	226, 440, 999, 1007
MhlI	GDGCHC	1 cut(s)	715
MlsI	TGGCCA	1 cut(s)	70
MluI	ACGCGT	1 cut(s)	559
MluNI	TGGCCA	1 cut(s)	70
MlyI	GAGTC	1 cut(s)	46
MmeI	TCCRAC	2 cut(s)	544, 1043
MnlI	CCTC	5 cut(s)	144, 161, 247, 361, 478
Mox20I	TGGCCA	1 cut(s)	70
Mph1103I	ATGCAT	1 cut(s)	82
MscI	TGGCCA	1 cut(s)	70
MseI	TTAA	8 cut(s)	107, 182, 324, 393, 531, 552, 623, 669
MslI	CAYNNNNRTG	2 cut(s)	758, 899
Msp20I	TGGCCA	1 cut(s)	70
MspR9I	CCNGG	2 cut(s)	155, 740
Mva1269I	GAATGC	1 cut(s)	300
MvaI	CCWGG	2 cut(s)	155, 740
MvnI	CGCG	1 cut(s)	561
MwoI	GCNNNNNNNGC	2 cut(s)	295, 500
NcoI	CCATGG	1 cut(s)	772
NdeI	CATATG	1 cut(s)	82
NdeII	GATC	3 cut(s)	301, 415, 568
NlaIII	CATG	3 cut(s)	382, 776, 898
NlaIV	GGNNCC	1 cut(s)	855
NsiI	ATGCAT	1 cut(s)	82
NspI	RCATGY	1 cut(s)	382
PasI	CCCWGGG	1 cut(s)	739
PctI	GAATGC	1 cut(s)	300
PfeI	GAWTC	3 cut(s)	457, 883, 1006
PleI	GAGTC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	46
PshBI	ATTAAT	1 cut(s)	107
PsiI	TTATAA	1 cut(s)	996
Psp6I	CCWGG	2 cut(s)	153, 738
PspGI	CCWGG	2 cut(s)	153, 738
PspN4I	GGNNCC	1 cut(s)	855
PspPI	GGNCC	1 cut(s)	652
PstI	CTGCAG	1 cut(s)	972
RsaI	GTAC	3 cut(s)	377, 648, 728
RsaNI	GTAC	3 cut(s)	376, 647, 727
RseI	CAYNNNNRTG	2 cut(s)	758, 899
SaqAI	TTAA	8 cut(s)	107, 182, 324, 393, 531, 552, 623, 669
Sau3AI	GATC	3 cut(s)	301, 415, 568
Sau96I	GGNCC	1 cut(s)	652
ScaI	AGTACT	1 cut(s)	648
SchI	GAGTC	1 cut(s)	46
ScrFI	CCNGG	2 cut(s)	155, 740
SduI	GDGCHC	1 cut(s)	715
SfaNI	GCATC	2 cut(s)	20, 490
SfcI	CTRYAG	1 cut(s)	968
SmiMI	CAYNNNNRTG	2 cut(s)	758, 899
SmlI	CTYRAG	4 cut(s)	135, 235, 251, 791
SmoI	CTYRAG	4 cut(s)	135, 235, 251, 791
SspI	AATATT	1 cut(s)	439
SspMI	CTAG	4 cut(s)	203, 360, 758, 959
StyD4I	CCNGG	2 cut(s)	153, 738
StyI	CCWWGG	1 cut(s)	772
TaaI	ACNGT	3 cut(s)	64, 375, 982
TaqI	TCGA	3 cut(s)	55, 418, 879
TatI	WGTACW	2 cut(s)	375, 646
TfiI	GAWTC	3 cut(s)	457, 883, 1006
Tru1I	TTAA	8 cut(s)	107, 182, 324, 393, 531, 552, 623, 669
Tru9I	TTAA	8 cut(s)	107, 182, 324, 393, 531, 552, 623, 669
TscAI	CASTG	1 cut(s)	943
TspDTI	ATGAA	3 cut(s)	99, 282, 920
TspRI	CASTG	1 cut(s)	943
VspI	ATTAAT	1 cut(s)	107
XapI	RAATTY	8 cut(s)	225, 277, 330, 548, 590, 778, 907, 1024
XceI	RCATGY	1 cut(s)	382
XspI	CTAG	4 cut(s)	203, 360, 758, 959
ZrmI	AGTACT	1 cut(s)	648
Zsp2I	ATGCAT	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.