Rroxscaffold_2G00101160

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0017978
Physical Location & Seq
Reverse (-)
23179641 .. 23180542
902 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00101160.1

Sequence Viewer

Length: 357 bp
ATGCCTTCGCCGGCGATCGAACTCCCGCAAGCAATGAACGAGCGAAACAAAGAAGCAGTTTGGAAGTTTTCTTCTAGCAGATTAAGATGCTTCTCCAACAAGGTCGAGGCCGTCGTTCCAATGGTGATTGGAGCTCTCACGACGCACGGGACCGCAAGACGCGATGCACGAAATGAAGACGGTGAAGCGGTGGCGCCTTGGGTGAATGTGGTTAGTGAAGCTGTTTTTGATCTAGAGGATGTGGAGAACGATATTCGAGGCTTCCTCAAGAGTAGCCTGTCATACTTGAACGTCTTGGTGGTTGACATTGTCGATGCAAAGTGCTTGCCCAAGAATGTTAGCTTTAATCCCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.05

Weight (kDa)

5.13

Isoelectric Point (pI)

48.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 193
AccII CGCG 1 cut(s) 162
AciI CCGC 3 cut(s) 26, 153, 188
AcyI GRCGYC 1 cut(s) 194
AgsI TTSAA 1 cut(s) 289
AluBI AGCT 3 cut(s) 134, 221, 342
AluI AGCT 3 cut(s) 134, 221, 342
Alw21I GWGCWC 1 cut(s) 136
AoxI GGCC 1 cut(s) 108
AspLEI GCGC 1 cut(s) 196
AspS9I GGNCC 1 cut(s) 150
AsuHPI GGTGA 3 cut(s) 136, 194, 214
AvaII GGWCC 1 cut(s) 150
BanI GGYRCC 1 cut(s) 193
BanII GRGCYC 1 cut(s) 136
BbsI GAAGAC 1 cut(s) 183
Bbv12I GWGCWC 1 cut(s) 136
BceAI ACGGC 1 cut(s) 95
BfaI CTAG 2 cut(s) 75, 233
BfoI RGCGCY 1 cut(s) 197
Bme18I GGWCC 1 cut(s) 150
BmgT120I GGNCC 1 cut(s) 150
BmiI GGNNCC 2 cut(s) 151, 195
BmsI GCATC 3 cut(s) 77, 154, 304
BpiI GAAGAC 1 cut(s) 183
BplI GAGNNNNNCTC 2 cut(s) 249, 281
BpuEI CTTGAG 1 cut(s) 251
BsaHI GRCGYC 1 cut(s) 194
BsaJI CCNNGG 1 cut(s) 197
Bse118I RCCGGY 1 cut(s) 10
Bse3DI GCAATG 1 cut(s) 39
BseDI CCNNGG 1 cut(s) 197
BseGI GGATG 1 cut(s) 244
BseMI GCAATG 1 cut(s) 39
Bsh1236I CGCG 1 cut(s) 162
Bsh1285I CGRYCG 1 cut(s) 18
BshFI GGCC 1 cut(s) 110
BshNI GGYRCC 1 cut(s) 193
BsiEI CGRYCG 1 cut(s) 18
BsiHKAI GWGCWC 1 cut(s) 136
BsiSI CCGG 1 cut(s) 11
BslFI GGGAC 1 cut(s) 163
BsmFI GGGAC 1 cut(s) 163
BsnI GGCC 1 cut(s) 110
Bsp1286I GDGCHC 1 cut(s) 136
Bsp143I GATC 2 cut(s) 15, 229
BspACI CCGC 3 cut(s) 26, 153, 188
BspANI GGCC 1 cut(s) 110
BspFNI CGCG 1 cut(s) 162
BspLI GGNNCC 2 cut(s) 151, 195
BspT107I GGYRCC 1 cut(s) 193
BsrDI GCAATG 1 cut(s) 39
BsrFI RCCGGY 1 cut(s) 10
BssAI RCCGGY 1 cut(s) 10
BssECI CCNNGG 1 cut(s) 197
BssMI GATC 2 cut(s) 15, 229
BssNI GRCGYC 1 cut(s) 194
BssT1I CCWWGG 1 cut(s) 197
Bst4CI ACNGT 1 cut(s) 182
BstACI GRCGYC 1 cut(s) 194
BstC8I GCNNGC 3 cut(s) 12, 30, 326
BstF5I GGATG 1 cut(s) 244
BstFNI CGCG 1 cut(s) 162
BstH2I RGCGCY 1 cut(s) 197
BstHHI GCGC 1 cut(s) 196
BstKTI GATC 2 cut(s) 18, 232
BstMBI GATC 2 cut(s) 15, 229
BstMCI CGRYCG 1 cut(s) 18
BstUI CGCG 1 cut(s) 162
BstV2I GAAGAC 1 cut(s) 183
BsuRI GGCC 1 cut(s) 110
BtgZI GCGATG 1 cut(s) 177
BtsCI GGATG 1 cut(s) 244
Cac8I GCNNGC 3 cut(s) 12, 30, 326
CfoI GCGC 1 cut(s) 196
Cfr10I RCCGGY 1 cut(s) 10
Cfr13I GGNCC 1 cut(s) 150
CseI GACGC 2 cut(s) 151, 168
CviJI RGCY 6 cut(s) 110, 134, 221, 261, 276, 342
CviKI_1 RGCY 6 cut(s) 110, 134, 221, 261, 276, 342
DinI GGCGCC 1 cut(s) 195
DpnI GATC 2 cut(s) 17, 231
DpnII GATC 2 cut(s) 15, 229
Ecl136II GAGCTC 1 cut(s) 134
Eco130I CCWWGG 1 cut(s) 197
Eco24I GRGCYC 1 cut(s) 136
Eco47I GGWCC 1 cut(s) 150
Eco53kI GAGCTC 1 cut(s) 134
EcoICRI GAGCTC 1 cut(s) 134
EcoT14I CCWWGG 1 cut(s) 197
EcoT38I GRGCYC 1 cut(s) 136
EgeI GGCGCC 1 cut(s) 195
EheI GGCGCC 1 cut(s) 195
ErhI CCWWGG 1 cut(s) 197
FaiI YATR 1 cut(s) 283
FaqI GGGAC 1 cut(s) 163
FauI CCCGC 1 cut(s) 33
FokI GGATG 1 cut(s) 251
FriOI GRGCYC 1 cut(s) 136
FspBI CTAG 2 cut(s) 75, 233
GlaI GCGC 1 cut(s) 195
HaeII RGCGCY 1 cut(s) 197
HaeIII GGCC 1 cut(s) 110
HapII CCGG 1 cut(s) 11
HgaI GACGC 2 cut(s) 151, 168
HhaI GCGC 1 cut(s) 196
Hin1I GRCGYC 1 cut(s) 194
Hin6I GCGC 1 cut(s) 194
HinP1I GCGC 1 cut(s) 194
HincII GTYRAC 1 cut(s) 304
HindII GTYRAC 1 cut(s) 304
HpaII CCGG 1 cut(s) 11
HphI GGTGA 3 cut(s) 136, 194, 214
Hpy166II GTNNAC 1 cut(s) 304
Hpy188III TCNNGA 3 cut(s) 139, 233, 268
Hpy8I GTNNAC 1 cut(s) 304
Hpy99I CGWCG 2 cut(s) 116, 145
HpyAV CCTTC 1 cut(s) 15
HpyCH4III ACNGT 1 cut(s) 182
HpyCH4IV ACGT 1 cut(s) 291
HpyCH4V TGCA 2 cut(s) 167, 317
HpySE526I ACGT 1 cut(s) 291
Hsp92I GRCGYC 1 cut(s) 194
HspAI GCGC 1 cut(s) 194
KasI GGCGCC 1 cut(s) 193
KroI GCCGGC 1 cut(s) 10
KroNI GCCGGC 1 cut(s) 12
Kzo9I GATC 2 cut(s) 15, 229
LmnI GCTCC 1 cut(s) 131
LpnPI CCDG 2 cut(s) 24, 290
LweI GCATC 3 cut(s) 77, 154, 304
MaeI CTAG 2 cut(s) 75, 233
MaeII ACGT 1 cut(s) 291
MalI GATC 2 cut(s) 17, 231
MboI GATC 2 cut(s) 15, 229
MboII GAAGA 2 cut(s) 63, 188
MhlI GDGCHC 1 cut(s) 136
MluCI AATT 1 cut(s) 352
Mly113I GGCGCC 1 cut(s) 194
MmeI TCCRAC 1 cut(s) 120
MnlI CCTC 4 cut(s) 100, 229, 251, 275
MreI CGCCGGCG 1 cut(s) 10
MroNI GCCGGC 1 cut(s) 10
MseI TTAA 2 cut(s) 83, 345
MspI CCGG 1 cut(s) 11
MvnI CGCG 1 cut(s) 162
NaeI GCCGGC 1 cut(s) 12
NarI GGCGCC 1 cut(s) 194
NdeII GATC 2 cut(s) 15, 229
NgoMIV GCCGGC 1 cut(s) 10
NlaIV GGNNCC 2 cut(s) 151, 195
PcsI WCGNNNNNNNCGW 2 cut(s) 111, 166
PdiI GCCGGC 1 cut(s) 12
PflFI GACNNNGTC 1 cut(s) 308
Ple19I CGATCG 1 cut(s) 18
PluTI GGCGCC 1 cut(s) 197
Psp124BI GAGCTC 1 cut(s) 136
PspN4I GGNNCC 2 cut(s) 151, 195
PspPI GGNCC 1 cut(s) 150
PsyI GACNNNGTC 1 cut(s) 308
PvuI CGATCG 1 cut(s) 18
SacI GAGCTC 1 cut(s) 136
SaqAI TTAA 2 cut(s) 83, 345
Sau3AI GATC 2 cut(s) 15, 229
Sau96I GGNCC 1 cut(s) 150
SduI GDGCHC 1 cut(s) 136
SetI ASST 5 cut(s) 105, 136, 223, 294, 344
SfaNI GCATC 3 cut(s) 77, 154, 304
SfoI GGCGCC 1 cut(s) 195
SgrAI CRCCGGYG 1 cut(s) 10
SinI GGWCC 1 cut(s) 150
SmlI CTYRAG 1 cut(s) 266
SmoI CTYRAG 1 cut(s) 266
Sse9I AATT 1 cut(s) 352
SsiI CCGC 3 cut(s) 26, 153, 188
SspDI GGCGCC 1 cut(s) 193
SspMI CTAG 2 cut(s) 75, 233
SstI GAGCTC 1 cut(s) 136
StyI CCWWGG 1 cut(s) 197
TaaI ACNGT 1 cut(s) 182
TaiI ACGT 1 cut(s) 294
TaqI TCGA 4 cut(s) 18, 105, 256, 312
TasI AATT 1 cut(s) 352
Tru1I TTAA 2 cut(s) 83, 345
Tru9I TTAA 2 cut(s) 83, 345
TspDTI ATGAA 2 cut(s) 50, 189
Tth111I GACNNNGTC 1 cut(s) 308
VpaK11BI GGWCC 1 cut(s) 150
XbaI TCTAGA 1 cut(s) 232
XspI CTAG 2 cut(s) 75, 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.