Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0017978

Physical Location & Seq

Genomic Coordinates Forward (+)

12254082 .. 12255005

Gene Structure 924 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G007470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGCATGATGTCATTCGGGATGGGTCCATGCTAATTGCATCATCTGAATATGGTGATGGATTTTTGGTCAAAGCTGGGACTCGAATGACGGTTTGGCCAAGTAATGCATATGAAGGCCACTCTGCAATCTCATTAATGGAGAACGATATTCGGAAGCTTCCTCAAGAGTTGGTATGTCCAAAACTCCAGATTTTATTACTGCAAGATAATGAAAATATAGAGGAGATCCCAGAAACATTTTTTGAAAGTTTGAATGAGTTAAAGGTCTTAGATCTCAGTCGCAGTGATATCTCGATCTTACCACAGTCTTTAAGTCTGCGGACCAACCTCCAGGCATTATATTTAGATGATTGCAATTTAATAAGCAATGAATTACCTGATGAAATAGGAAATTTGACTAAGCTAAGAATGCTTGATCTTAGTGGGAGTGGGTCAATTAAGAGAATTCCATCCAATTTGATATCAAGGCTGTCTAGGTTAGAGGAACTGTACATGCGAGGTAGTTTTAAGGACTGGGGGAGTAAAGTTGAGCGAGAAGGAGAAGAAACCAATGTTGGATTTGATGAGTTGATTCGCCTGTCATACTTAAACATTTTGGAGGTTGACGCAATGGATGCAAAGTGCTGGCCTAAGGATGTTAGCTTTAATCCCATTTGGGTAAAATTTGACATACGCGTCGGAGATCACATTTTGAGTATTGGTGAATTCGCAATGTCTCATTGGGAGAATTGGCTCTTAACACAAGTTCCCAATTCAGGAGTACTAGTTGGTTCAATAGCGCTGTTACCCAAAGAGCCCAGAAACTTTGGTACACAAAGTGCCAGGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC TIR

Protein Analysis

276

Amino Acids

31.17

Weight (kDa)

4.78

Isoelectric Point (pI)

45.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	44 - 168	1.3e-10	Leucine-rich repeat region
LRR_8	PF13855	60 - 120	7e-10	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017978)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05722
rosa_multiflora	Rmu_sc0003012.1_g000003
rosa_roxburghii	Rroxscaffold_2G00076990 Rroxscaffold_2G00101150 Rroxscaffold_2G00101160 Rroxscaffold_3G00238020 Rroxscaffold_5G00341310 Rroxscaffold_5G00341320 Rroxscaffold_5G00383400 Rroxscaffold_7G00209180
rosa_wichuraiana	Rw6G007470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	674
AccII	CGCG	1 cut(s)	675
AciI	CCGC	1 cut(s)	319
AclWI	GGATC	1 cut(s)	220
AcoI	YGGCCR	1 cut(s)	95
AcsI	RAATTY	4 cut(s)	391, 444, 662, 704
AdeI	CACNNNGTG	1 cut(s)	818
AfaI	GTAC	3 cut(s)	491, 762, 811
AfeI	AGCGCT	1 cut(s)	780
AfiI	CCNNNNNNNGG	1 cut(s)	755
AflIII	ACRYGT	1 cut(s)	673
AgsI	TTSAA	3 cut(s)	245, 253, 774
AhlI	ACTAGT	1 cut(s)	763
AjnI	CCWGG	2 cut(s)	330, 821
AjuI	GAANNNNNNNTTGG	4 cut(s)	76, 108, 537, 569
AluBI	AGCT	4 cut(s)	74, 157, 403, 642
AluI	AGCT	4 cut(s)	74, 157, 403, 642
Alw26I	GTCTC	1 cut(s)	720
AlwI	GGATC	1 cut(s)	220
Aor51HI	AGCGCT	1 cut(s)	780
AoxI	GGCC	3 cut(s)	95, 115, 626
ApoI	RAATTY	4 cut(s)	391, 444, 662, 704
AseI	ATTAAT	1 cut(s)	134
AspLEI	GCGC	1 cut(s)	781
AspS9I	GGNCC	2 cut(s)	24, 321
AsuHPI	GGTGA	2 cut(s)	65, 713
AvaII	GGWCC	2 cut(s)	24, 321
AxyI	CCTNAGG	1 cut(s)	630
BalI	TGGCCA	1 cut(s)	97
BanII	GRGCYC	1 cut(s)	798
BccI	CCATC	3 cut(s)	14, 50, 457
BciT130I	CCWGG	2 cut(s)	332, 823
BcoDI	GTCTC	1 cut(s)	720
BcuI	ACTAGT	1 cut(s)	763
BfaI	CTAG	2 cut(s)	474, 764
BfoI	RGCGCY	1 cut(s)	782
BglII	AGATCT	1 cut(s)	271
BmcAI	AGTACT	1 cut(s)	762
Bme1390I	CCNGG	2 cut(s)	332, 823
Bme18I	GGWCC	2 cut(s)	24, 321
BmgT120I	GGNCC	2 cut(s)	24, 321
BmiI	GGNNCC	1 cut(s)	25
BmrFI	CCNGG	2 cut(s)	332, 823
BmrI	ACTGGG	1 cut(s)	523
BmsI	GCATC	2 cut(s)	47, 604
BmuI	ACTGGG	1 cut(s)	523
BpmI	CTGGAG	2 cut(s)	170, 314
BpuEI	CTTGAG	1 cut(s)	147
BsaJI	CCNNGG	1 cut(s)	822
BsaXI	ACNNNNNCTCC	2 cut(s)	750, 780
Bsc4I	CCNNNNNNNGG	1 cut(s)	755
Bse1I	ACTGG	1 cut(s)	518
Bse21I	CCTNAGG	1 cut(s)	630
Bse3DI	GCAATG	3 cut(s)	373, 615, 717
BseBI	CCWGG	2 cut(s)	332, 823
BseDI	CCNNGG	1 cut(s)	822
BseGI	GGATG	4 cut(s)	25, 449, 619, 640
BseLI	CCNNNNNNNGG	1 cut(s)	755
BseMI	GCAATG	3 cut(s)	373, 615, 717
BseMII	CTCAG	1 cut(s)	289
BseNI	ACTGG	1 cut(s)	518
BseRI	GAGGAG	1 cut(s)	236
BseYI	CCCAGC	1 cut(s)	74
Bsh1236I	CGCG	1 cut(s)	675
BshFI	GGCC	3 cut(s)	97, 117, 628
BslFI	GGGAC	1 cut(s)	91
BslI	CCNNNNNNNGG	1 cut(s)	755
BsmAI	GTCTC	1 cut(s)	720
BsmFI	GGGAC	1 cut(s)	91
BsmI	GAATGC	1 cut(s)	414
BsnI	GGCC	3 cut(s)	97, 117, 628
Bsp1286I	GDGCHC	1 cut(s)	798
Bsp1407I	TGTACA	1 cut(s)	489
Bsp143I	GATC	5 cut(s)	225, 271, 294, 415, 682
BspACI	CCGC	1 cut(s)	319
BspANI	GGCC	3 cut(s)	97, 117, 628
BspCNI	CTCAG	1 cut(s)	288
BspFNI	CGCG	1 cut(s)	675
BspLI	GGNNCC	1 cut(s)	25
BspPI	GGATC	1 cut(s)	220
BsrDI	GCAATG	3 cut(s)	373, 615, 717
BsrGI	TGTACA	1 cut(s)	489
BsrI	ACTGG	1 cut(s)	518
BssECI	CCNNGG	1 cut(s)	822
BssMI	GATC	5 cut(s)	225, 271, 294, 415, 682
Bst2UI	CCWGG	2 cut(s)	332, 823
Bst4CI	ACNGT	3 cut(s)	91, 306, 489
BstAPI	GCANNNNNTGC	1 cut(s)	614
BstAUI	TGTACA	1 cut(s)	489
BstC8I	GCNNGC	1 cut(s)	626
BstDEI	CTNAG	6 cut(s)	268, 275, 399, 404, 419, 630
BstF5I	GGATG	4 cut(s)	25, 449, 619, 640
BstFNI	CGCG	1 cut(s)	675
BstH2I	RGCGCY	1 cut(s)	782
BstHHI	GCGC	1 cut(s)	781
BstKTI	GATC	5 cut(s)	228, 274, 297, 418, 685
BstMAI	GTCTC	1 cut(s)	720
BstMBI	GATC	5 cut(s)	225, 271, 294, 415, 682
BstMWI	GCNNNNNNNGC	2 cut(s)	409, 614
BstNI	CCWGG	2 cut(s)	332, 823
BstNSI	RCATGY	1 cut(s)	496
BstSCI	CCNGG	2 cut(s)	330, 821
BstUI	CGCG	1 cut(s)	675
BstX2I	RGATCY	2 cut(s)	225, 271
BstYI	RGATCY	2 cut(s)	225, 271
Bsu36I	CCTNAGG	1 cut(s)	630
BsuRI	GGCC	3 cut(s)	97, 117, 628
BtsCI	GGATG	4 cut(s)	25, 449, 619, 640
BtsI	GCAGTG	1 cut(s)	289
BtsIMutI	CAGTG	1 cut(s)	289
Cac8I	GCNNGC	1 cut(s)	626
CfoI	GCGC	1 cut(s)	781
Cfr13I	GGNCC	2 cut(s)	24, 321
CseI	GACGC	2 cut(s)	614, 664
Csp6I	GTAC	3 cut(s)	490, 761, 810
CviAII	CATG	3 cut(s)	5, 28, 493
CviQI	GTAC	3 cut(s)	490, 761, 810
DdeI	CTNAG	6 cut(s)	268, 275, 399, 404, 419, 630
DpnI	GATC	5 cut(s)	227, 273, 296, 417, 684
DpnII	GATC	5 cut(s)	225, 271, 294, 415, 682
DraIII	CACNNNGTG	1 cut(s)	818
DrdI	GACNNNNNNGTC	1 cut(s)	674
DseDI	GACNNNNNNGTC	1 cut(s)	674
EaeI	YGGCCR	1 cut(s)	95
Eco24I	GRGCYC	1 cut(s)	798
Eco32I	GATATC	2 cut(s)	289, 462
Eco47I	GGWCC	2 cut(s)	24, 321
Eco47III	AGCGCT	1 cut(s)	780
Eco81I	CCTNAGG	1 cut(s)	630
EcoRI	GAATTC	2 cut(s)	444, 704
EcoRII	CCWGG	2 cut(s)	330, 821
EcoRV	GATATC	2 cut(s)	289, 462
EcoT22I	ATGCAT	2 cut(s)	6, 109
EcoT38I	GRGCYC	1 cut(s)	798
FaeI	CATG	3 cut(s)	8, 31, 496
FaqI	GGGAC	1 cut(s)	91
FatI	CATG	3 cut(s)	4, 27, 492
FauNDI	CATATG	1 cut(s)	109
FokI	GGATG	4 cut(s)	32, 436, 626, 647
FriOI	GRGCYC	1 cut(s)	798
FspBI	CTAG	2 cut(s)	474, 764
GlaI	GCGC	1 cut(s)	780
GsaI	CCCAGC	1 cut(s)	78
GsuI	CTGGAG	2 cut(s)	170, 314
HaeII	RGCGCY	1 cut(s)	782
HaeIII	GGCC	3 cut(s)	97, 117, 628
HgaI	GACGC	2 cut(s)	614, 664
HhaI	GCGC	1 cut(s)	781
Hin1II	CATG	3 cut(s)	8, 31, 496
Hin6I	GCGC	1 cut(s)	779
HinP1I	GCGC	1 cut(s)	779
HincII	GTYRAC	1 cut(s)	604
HindII	GTYRAC	1 cut(s)	604
HindIII	AAGCTT	1 cut(s)	155
HinfI	GANTC	2 cut(s)	79, 571
HphI	GGTGA	2 cut(s)	65, 713
Hpy166II	GTNNAC	2 cut(s)	604, 812
Hpy188I	TCNGA	3 cut(s)	46, 153, 680
Hpy188III	TCNNGA	5 cut(s)	17, 164, 187, 292, 756
Hpy8I	GTNNAC	2 cut(s)	604, 812
Hpy99I	CGWCG	1 cut(s)	680
HpyAV	CCTTC	2 cut(s)	107, 530
HpyCH4III	ACNGT	3 cut(s)	91, 306, 489
HpyCH4V	TGCA	7 cut(s)	4, 38, 107, 125, 202, 354, 617
HpyF10VI	GCNNNNNNNGC	2 cut(s)	409, 614
HpyF3I	CTNAG	6 cut(s)	268, 275, 399, 404, 419, 630
Hsp92II	CATG	3 cut(s)	8, 31, 496
HspAI	GCGC	1 cut(s)	779
Kzo9I	GATC	5 cut(s)	225, 271, 294, 415, 682
LweI	GCATC	2 cut(s)	47, 604
MaeI	CTAG	2 cut(s)	474, 764
MaeIII	GTNAC	1 cut(s)	783
MalI	GATC	5 cut(s)	227, 273, 296, 417, 684
MboI	GATC	5 cut(s)	225, 271, 294, 415, 682
MboII	GAAGA	1 cut(s)	554
MflI	RGATCY	2 cut(s)	225, 271
MhlI	GDGCHC	1 cut(s)	798
MlsI	TGGCCA	1 cut(s)	97
MluI	ACGCGT	1 cut(s)	673
MluNI	TGGCCA	1 cut(s)	97
MlyI	GAGTC	1 cut(s)	73
MmeI	TCCRAC	2 cut(s)	535, 658
MnlI	CCTC	6 cut(s)	171, 214, 338, 475, 491, 592
Mox20I	TGGCCA	1 cut(s)	97
Mph1103I	ATGCAT	2 cut(s)	6, 109
MscI	TGGCCA	1 cut(s)	97
MseI	TTAA	9 cut(s)	134, 260, 311, 359, 438, 507, 587, 645, 737
Msp20I	TGGCCA	1 cut(s)	97
MspR9I	CCNGG	2 cut(s)	332, 823
Mva1269I	GAATGC	1 cut(s)	414
MvaI	CCWGG	2 cut(s)	332, 823
MvnI	CGCG	1 cut(s)	675
MwoI	GCNNNNNNNGC	2 cut(s)	409, 614
NdeI	CATATG	1 cut(s)	109
NdeII	GATC	5 cut(s)	225, 271, 294, 415, 682
NlaIII	CATG	3 cut(s)	8, 31, 496
NlaIV	GGNNCC	1 cut(s)	25
NsiI	ATGCAT	2 cut(s)	6, 109
NspI	RCATGY	1 cut(s)	496
PctI	GAATGC	1 cut(s)	414
PfeI	GAWTC	1 cut(s)	571
PleI	GAGTC	1 cut(s)	73
PpsI	GAGTC	1 cut(s)	73
PshBI	ATTAAT	1 cut(s)	134
Psp6I	CCWGG	2 cut(s)	330, 821
PspFI	CCCAGC	1 cut(s)	74
PspGI	CCWGG	2 cut(s)	330, 821
PspN4I	GGNNCC	1 cut(s)	25
PspPI	GGNCC	2 cut(s)	24, 321
PsuI	RGATCY	2 cut(s)	225, 271
RsaI	GTAC	3 cut(s)	491, 762, 811
RsaNI	GTAC	3 cut(s)	490, 761, 810
SaqAI	TTAA	9 cut(s)	134, 260, 311, 359, 438, 507, 587, 645, 737
Sau3AI	GATC	5 cut(s)	225, 271, 294, 415, 682
Sau96I	GGNCC	2 cut(s)	24, 321
ScaI	AGTACT	1 cut(s)	762
SchI	GAGTC	1 cut(s)	73
ScrFI	CCNGG	2 cut(s)	332, 823
SduI	GDGCHC	1 cut(s)	798
SfaNI	GCATC	2 cut(s)	47, 604
SinI	GGWCC	2 cut(s)	24, 321
SmlI	CTYRAG	1 cut(s)	162
SmoI	CTYRAG	1 cut(s)	162
SpeI	ACTAGT	1 cut(s)	763
SsiI	CCGC	1 cut(s)	319
SspMI	CTAG	2 cut(s)	474, 764
StyD4I	CCNGG	2 cut(s)	330, 821
TaaI	ACNGT	3 cut(s)	91, 306, 489
TaqI	TCGA	2 cut(s)	82, 293
TatI	WGTACW	2 cut(s)	489, 760
TfiI	GAWTC	1 cut(s)	571
Tru1I	TTAA	9 cut(s)	134, 260, 311, 359, 438, 507, 587, 645, 737
Tru9I	TTAA	9 cut(s)	134, 260, 311, 359, 438, 507, 587, 645, 737
TscAI	CASTG	1 cut(s)	289
TspDTI	ATGAA	4 cut(s)	126, 225, 384, 396
TspRI	CASTG	1 cut(s)	289
VpaK11BI	GGWCC	2 cut(s)	24, 321
VspI	ATTAAT	1 cut(s)	134
XapI	RAATTY	4 cut(s)	391, 444, 662, 704
XceI	RCATGY	1 cut(s)	496
XspI	CTAG	2 cut(s)	474, 764
ZrmI	AGTACT	1 cut(s)	762
Zsp2I	ATGCAT	2 cut(s)	6, 109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.