Rroxscaffold_5G00341320

ADP binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0017978
Physical Location & Seq
Forward (+)
9846225 .. 9860275
14051 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00341320.1

Sequence Viewer

Length: 606 bp
ATGGAGGACGAACGATATCAAAGCCGTGCAGTAACGATTTCTAATATTCTCGTTAAGAGATGGATATTCGAAGGGAATAATACTCGGGACCGTAACGTCATCTTACGGGTTCGTTTAAGGATGAGTAGTATCGTGGATAGGAGAGAGATTATTGTGATCGGCCACCGACAGTCCACTTTCTTCCTCTCGCAACTCAAAACCATCGAAGGTCTTATTCGATCATCAAGGCCGCCACCAACAAGCTCAAGGGAAGCTGGTCTTCATGCCTTCACCGGCTATCCGAACTTCGCAAGCAATGAACAGAGCGAAACGAAGAAGCGAGGTTTGGAAGTTTTCTTCGGCAAATTAAGACGCTTCTCCAACAAAGCCGAGGCTGTCGTTCCAATGGTGATTGGAGCTCTCACGGCGCACGGGACCTGCAAGGTTCAGCAAGCGAAGTTCTTGAGTGGAGCTAGCGATCGAGTTGAGCTTGCACAAGTGAGCTACTTCGATGCAGAACCACTTGAAAGACACGGATGCACGAACAATGAAGCAGTGCGCTTTTGGGTTAATGTGGTTAGAGAAGCCGCTTATGATCCGGAGGATGTGTTTGAGCCTTTGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

201

Amino Acids

22.88

Weight (kDa)

9.42

Isoelectric Point (pI)

56.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 95
Acc36I ACCTGC 1 cut(s) 425
AccIII TCCGGA 1 cut(s) 577
AciI CCGC 2 cut(s) 230, 567
AclWI GGATC 1 cut(s) 569
AcoI YGGCCR 1 cut(s) 160
AgsI TTSAA 1 cut(s) 506
AjuI GAANNNNNNNTTGG 2 cut(s) 308, 340
AluBI AGCT 6 cut(s) 243, 254, 398, 452, 469, 483
AluI AGCT 6 cut(s) 243, 254, 398, 452, 469, 483
Alw21I GWGCWC 1 cut(s) 400
AlwI GGATC 1 cut(s) 569
Ama87I CYCGRG 1 cut(s) 84
Aor13HI TCCGGA 1 cut(s) 577
AoxI GGCC 2 cut(s) 160, 227
AspLEI GCGC 2 cut(s) 409, 540
AspS9I GGNCC 2 cut(s) 88, 414
AsuHPI GGTGA 2 cut(s) 262, 400
AsuII TTCGAA 1 cut(s) 69
AsuNHI GCTAGC 1 cut(s) 452
AvaI CYCGRG 1 cut(s) 84
AvaII GGWCC 2 cut(s) 88, 414
BanII GRGCYC 1 cut(s) 400
BbsI GAAGAC 1 cut(s) 251
Bbv12I GWGCWC 1 cut(s) 400
BccI CCATC 2 cut(s) 54, 209
BceAI ACGGC 2 cut(s) 9, 420
BfaI CTAG 1 cut(s) 453
BfuAI ACCTGC 1 cut(s) 425
BisI GCNGC 2 cut(s) 230, 567
BlsI GCNGC 2 cut(s) 231, 568
Bme18I GGWCC 2 cut(s) 88, 414
BmeT110I CYCGRG 1 cut(s) 84
BmgT120I GGNCC 2 cut(s) 88, 414
BmiI GGNNCC 2 cut(s) 89, 415
BmsI GCATC 2 cut(s) 481, 506
BmtI GCTAGC 1 cut(s) 456
BpiI GAAGAC 1 cut(s) 251
Bpu14I TTCGAA 1 cut(s) 69
BpuEI CTTGAG 2 cut(s) 229, 463
BsaJI CCNNGG 1 cut(s) 369
BsaWI WCCGGW 1 cut(s) 577
BsaXI ACNNNNNCTCC 2 cut(s) 572, 602
Bse118I RCCGGY 1 cut(s) 272
Bse3DI GCAATG 1 cut(s) 301
BseAI TCCGGA 1 cut(s) 577
BseDI CCNNGG 1 cut(s) 369
BseGI GGATG 3 cut(s) 126, 521, 589
BseMI GCAATG 1 cut(s) 301
BsgI GTGCAG 1 cut(s) 48
Bsh1285I CGRYCG 1 cut(s) 460
BshFI GGCC 2 cut(s) 162, 229
BsiEI CGRYCG 1 cut(s) 460
BsiHKAI GWGCWC 1 cut(s) 400
BsiHKCI CYCGRG 1 cut(s) 84
BsiSI CCGG 2 cut(s) 273, 578
BslFI GGGAC 2 cut(s) 101, 427
BsmFI GGGAC 2 cut(s) 101, 427
BsnI GGCC 2 cut(s) 162, 229
BsoBI CYCGRG 1 cut(s) 84
Bsp119I TTCGAA 1 cut(s) 69
Bsp1286I GDGCHC 1 cut(s) 400
Bsp13I TCCGGA 1 cut(s) 577
Bsp143I GATC 4 cut(s) 156, 218, 457, 574
BspACI CCGC 2 cut(s) 230, 567
BspANI GGCC 2 cut(s) 162, 229
BspEI TCCGGA 1 cut(s) 577
BspLI GGNNCC 2 cut(s) 89, 415
BspMI ACCTGC 1 cut(s) 425
BspOI GCTAGC 1 cut(s) 456
BspPI GGATC 1 cut(s) 569
BspT104I TTCGAA 1 cut(s) 69
BsrDI GCAATG 1 cut(s) 301
BsrFI RCCGGY 1 cut(s) 272
BssAI RCCGGY 1 cut(s) 272
BssECI CCNNGG 1 cut(s) 369
BssMI GATC 4 cut(s) 156, 218, 457, 574
Bst4CI ACNGT 2 cut(s) 92, 171
BstBI TTCGAA 1 cut(s) 69
BstC8I GCNNGC 4 cut(s) 292, 432, 454, 471
BstF5I GGATG 3 cut(s) 126, 521, 589
BstHHI GCGC 2 cut(s) 409, 540
BstKTI GATC 4 cut(s) 159, 221, 460, 577
BstMBI GATC 4 cut(s) 156, 218, 457, 574
BstMCI CGRYCG 1 cut(s) 460
BstMWI GCNNNNNNNGC 1 cut(s) 404
BstV2I GAAGAC 1 cut(s) 251
BsuRI GGCC 2 cut(s) 162, 229
BtsCI GGATG 3 cut(s) 126, 521, 589
BtsI GCAGTG 1 cut(s) 540
BtsIMutI CAGTG 1 cut(s) 540
BveI ACCTGC 1 cut(s) 425
Cac8I GCNNGC 4 cut(s) 292, 432, 454, 471
CfoI GCGC 2 cut(s) 409, 540
Cfr10I RCCGGY 1 cut(s) 272
Cfr13I GGNCC 2 cut(s) 88, 414
CseI GACGC 1 cut(s) 360
CviAII CATG 1 cut(s) 263
DpnI GATC 4 cut(s) 158, 220, 459, 576
DpnII GATC 4 cut(s) 156, 218, 457, 574
DrdI GACNNNNNNGTC 1 cut(s) 95
DseDI GACNNNNNNGTC 1 cut(s) 95
EaeI YGGCCR 1 cut(s) 160
Ecl136II GAGCTC 1 cut(s) 398
Eco24I GRGCYC 1 cut(s) 400
Eco32I GATATC 1 cut(s) 17
Eco47I GGWCC 2 cut(s) 88, 414
Eco53kI GAGCTC 1 cut(s) 398
Eco88I CYCGRG 1 cut(s) 84
EcoICRI GAGCTC 1 cut(s) 398
EcoO109I RGGNCCY 1 cut(s) 414
EcoRV GATATC 1 cut(s) 17
EcoT38I GRGCYC 1 cut(s) 400
FaeI CATG 1 cut(s) 266
FaiI YATR 2 cut(s) 264, 573
FalI AAGNNNNNCTT 2 cut(s) 243, 275
FaqI GGGAC 2 cut(s) 101, 427
FatI CATG 1 cut(s) 262
Fnu4HI GCNGC 2 cut(s) 230, 567
FokI GGATG 3 cut(s) 133, 528, 596
FriOI GRGCYC 1 cut(s) 400
Fsp4HI GCNGC 2 cut(s) 230, 567
FspBI CTAG 1 cut(s) 453
GlaI GCGC 2 cut(s) 408, 539
GluI GCNGC 2 cut(s) 230, 567
HaeIII GGCC 2 cut(s) 162, 229
HapII CCGG 2 cut(s) 273, 578
HgaI GACGC 1 cut(s) 360
HhaI GCGC 2 cut(s) 409, 540
Hin1II CATG 1 cut(s) 266
Hin6I GCGC 2 cut(s) 407, 538
HinP1I GCGC 2 cut(s) 407, 538
HpaII CCGG 2 cut(s) 273, 578
HphI GGTGA 2 cut(s) 262, 400
Hpy166II GTNNAC 1 cut(s) 174
Hpy188I TCNGA 1 cut(s) 282
Hpy188III TCNNGA 4 cut(s) 86, 442, 578, 603
Hpy8I GTNNAC 1 cut(s) 174
HpyAV CCTTC 3 cut(s) 65, 200, 277
HpyCH4III ACNGT 2 cut(s) 92, 171
HpyCH4IV ACGT 1 cut(s) 96
HpyCH4V TGCA 5 cut(s) 29, 420, 473, 494, 519
HpyF10VI GCNNNNNNNGC 1 cut(s) 404
HpySE526I ACGT 1 cut(s) 96
Hsp92II CATG 1 cut(s) 266
HspAI GCGC 2 cut(s) 407, 538
Kpn2I TCCGGA 1 cut(s) 577
Kzo9I GATC 4 cut(s) 156, 218, 457, 574
LmnI GCTCC 2 cut(s) 395, 449
LpnPI CCDG 4 cut(s) 240, 286, 430, 591
LweI GCATC 2 cut(s) 481, 506
MaeI CTAG 1 cut(s) 453
MaeII ACGT 1 cut(s) 96
MaeIII GTNAC 2 cut(s) 31, 92
MalI GATC 4 cut(s) 158, 220, 459, 576
MboI GATC 4 cut(s) 156, 218, 457, 574
MboII GAAGA 4 cut(s) 172, 251, 325, 328
MhlI GDGCHC 1 cut(s) 400
MluCI AATT 1 cut(s) 344
MmeI TCCRAC 1 cut(s) 384
MnlI CCTC 4 cut(s) 194, 314, 364, 574
MroI TCCGGA 1 cut(s) 577
MseI TTAA 4 cut(s) 54, 116, 347, 549
MspI CCGG 2 cut(s) 273, 578
MwoI GCNNNNNNNGC 1 cut(s) 404
NdeII GATC 4 cut(s) 156, 218, 457, 574
NheI GCTAGC 1 cut(s) 452
NlaIII CATG 1 cut(s) 266
NlaIV GGNNCC 2 cut(s) 89, 415
NmeAIII GCCGAG 1 cut(s) 394
NspV TTCGAA 1 cut(s) 69
PkrI GCNGC 2 cut(s) 231, 568
Ple19I CGATCG 1 cut(s) 460
PpuMI RGGWCCY 1 cut(s) 414
Psp124BI GAGCTC 1 cut(s) 400
Psp5II RGGWCCY 1 cut(s) 414
PspN4I GGNNCC 2 cut(s) 89, 415
PspPI GGNCC 2 cut(s) 88, 414
PspPPI RGGWCCY 1 cut(s) 414
PvuI CGATCG 1 cut(s) 460
SacI GAGCTC 1 cut(s) 400
SaqAI TTAA 4 cut(s) 54, 116, 347, 549
SatI GCNGC 2 cut(s) 230, 567
Sau3AI GATC 4 cut(s) 156, 218, 457, 574
Sau96I GGNCC 2 cut(s) 88, 414
SduI GDGCHC 1 cut(s) 400
SfaNI GCATC 2 cut(s) 481, 506
SfuI TTCGAA 1 cut(s) 69
SinI GGWCC 2 cut(s) 88, 414
SmlI CTYRAG 2 cut(s) 244, 442
SmoI CTYRAG 2 cut(s) 244, 442
Sse9I AATT 1 cut(s) 344
SsiI CCGC 2 cut(s) 230, 567
SspI AATATT 1 cut(s) 46
SspMI CTAG 1 cut(s) 453
SstI GAGCTC 1 cut(s) 400
TaaI ACNGT 2 cut(s) 92, 171
TaiI ACGT 1 cut(s) 99
TaqI TCGA 5 cut(s) 69, 204, 217, 460, 489
TasI AATT 1 cut(s) 344
TauI GCSGC 2 cut(s) 232, 569
Tru1I TTAA 4 cut(s) 54, 116, 347, 549
Tru9I TTAA 4 cut(s) 54, 116, 347, 549
TscAI CASTG 1 cut(s) 540
TspDTI ATGAA 3 cut(s) 251, 312, 543
TspGWI ACGGA 1 cut(s) 528
TspRI CASTG 1 cut(s) 540
VpaK11BI GGWCC 2 cut(s) 88, 414
XspI CTAG 1 cut(s) 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.