Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0017978

Physical Location & Seq

Genomic Coordinates Reverse (-)

673162 .. 676740

Gene Structure 3579 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00076990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGCTAATCGAGGTTTCAAGGTCAAGATTGGGGATGGAAGAGCGAGGAGCTTGTGGTGGGAGAGACAATATTCCATGTGATTATGGTTCTTTGAAACTTGAAATTCTTAGCACGAGATATTCAGCCCTTGGGGAATTACCTGAAGAAATAGGAAATTTGGCTAAGCTAAGAATGCTTGATCTTAGTTGGAGTCGGTACATTAAGAGAATTCTATCCACTTTGATATCAAGGTTGTCTAGGTTGGAAGAACTATACATGCAAGATAGTTTTCGGGATGGGAGAGTAAGGTTGAGCGAGAAGGAGAAGAAACCAATGTTAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC TIR

Protein Analysis

107

Amino Acids

12.37

Weight (kDa)

8.64

Isoelectric Point (pI)

60.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	32 - 89	2.9e-06	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0017978)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05722
rosa_multiflora	Rmu_sc0003012.1_g000003
rosa_roxburghii	Rroxscaffold_2G00076990 Rroxscaffold_2G00101150 Rroxscaffold_2G00101160 Rroxscaffold_3G00238020 Rroxscaffold_5G00341310 Rroxscaffold_5G00341320 Rroxscaffold_5G00383400 Rroxscaffold_7G00209180
rosa_wichuraiana	Rw6G007470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	3 cut(s)	102, 154, 207
AcuI	CTGAAG	1 cut(s)	162
AfaI	GTAC	1 cut(s)	197
AgsI	TTSAA	3 cut(s)	18, 94, 101
AluBI	AGCT	2 cut(s)	50, 166
AluI	AGCT	2 cut(s)	50, 166
Alw26I	GTCTC	1 cut(s)	57
ApoI	RAATTY	3 cut(s)	102, 154, 207
BauI	CACGAG	1 cut(s)	112
BccI	CCATC	2 cut(s)	28, 269
BcoDI	GTCTC	1 cut(s)	57
BfaI	CTAG	1 cut(s)	237
BlpI	GCTNAGC	1 cut(s)	162
Bpu1102I	GCTNAGC	1 cut(s)	162
BsaJI	CCNNGG	1 cut(s)	127
BseDI	CCNNGG	1 cut(s)	127
BseGI	GGATG	2 cut(s)	39, 280
BseRI	GAGGAG	1 cut(s)	60
BsmAI	GTCTC	1 cut(s)	57
BsmI	GAATGC	1 cut(s)	177
Bsp143I	GATC	1 cut(s)	178
Bsp1720I	GCTNAGC	1 cut(s)	162
BspQI	GCTCTTC	1 cut(s)	33
BssECI	CCNNGG	1 cut(s)	127
BssMI	GATC	1 cut(s)	178
BssSI	CACGAG	1 cut(s)	112
BssT1I	CCWWGG	1 cut(s)	127
Bst2BI	CACGAG	1 cut(s)	112
Bst6I	CTCTTC	1 cut(s)	33
BstDEI	CTNAG	4 cut(s)	107, 162, 167, 182
BstF5I	GGATG	2 cut(s)	39, 280
BstKTI	GATC	1 cut(s)	181
BstMAI	GTCTC	1 cut(s)	57
BstMBI	GATC	1 cut(s)	178
BstMWI	GCNNNNNNNGC	1 cut(s)	172
BstNSI	RCATGY	1 cut(s)	259
BtsCI	GGATG	2 cut(s)	39, 280
Csp6I	GTAC	1 cut(s)	196
CviAII	CATG	2 cut(s)	75, 256
CviJI	RGCY	4 cut(s)	50, 125, 161, 166
CviKI_1	RGCY	4 cut(s)	50, 125, 161, 166
CviQI	GTAC	1 cut(s)	196
DdeI	CTNAG	4 cut(s)	107, 162, 167, 182
DpnI	GATC	1 cut(s)	180
DpnII	GATC	1 cut(s)	178
Eam1104I	CTCTTC	1 cut(s)	33
EarI	CTCTTC	1 cut(s)	33
Eco130I	CCWWGG	1 cut(s)	127
Eco32I	GATATC	1 cut(s)	225
Eco57I	CTGAAG	1 cut(s)	162
EcoRI	GAATTC	1 cut(s)	207
EcoRV	GATATC	1 cut(s)	225
EcoT14I	CCWWGG	1 cut(s)	127
ErhI	CCWWGG	1 cut(s)	127
FaeI	CATG	2 cut(s)	78, 259
FaiI	YATR	4 cut(s)	76, 84, 253, 257
FatI	CATG	2 cut(s)	74, 255
FokI	GGATG	2 cut(s)	46, 287
FspBI	CTAG	1 cut(s)	237
Hin1II	CATG	2 cut(s)	78, 259
HinfI	GANTC	1 cut(s)	190
Hpy188III	TCNNGA	2 cut(s)	24, 272
HpyAV	CCTTC	1 cut(s)	292
HpyCH4V	TGCA	1 cut(s)	259
HpyF10VI	GCNNNNNNNGC	1 cut(s)	172
HpyF3I	CTNAG	4 cut(s)	107, 162, 167, 182
Hsp92II	CATG	2 cut(s)	78, 259
Kzo9I	GATC	1 cut(s)	178
LguI	GCTCTTC	1 cut(s)	33
LmnI	GCTCC	1 cut(s)	47
LpnPI	CCDG	1 cut(s)	153
MaeI	CTAG	1 cut(s)	237
MalI	GATC	1 cut(s)	180
MboI	GATC	1 cut(s)	178
MboII	GAAGA	4 cut(s)	50, 155, 257, 316
MluCI	AATT	4 cut(s)	102, 134, 154, 207
MlyI	GAGTC	1 cut(s)	199
MmeI	TCCRAC	2 cut(s)	167, 222
MnlI	CCTC	2 cut(s)	4, 38
MseI	TTAA	2 cut(s)	201, 322
Mva1269I	GAATGC	1 cut(s)	177
MwoI	GCNNNNNNNGC	1 cut(s)	172
NdeII	GATC	1 cut(s)	178
NlaIII	CATG	2 cut(s)	78, 259
NspI	RCATGY	1 cut(s)	259
PciSI	GCTCTTC	1 cut(s)	33
PctI	GAATGC	1 cut(s)	177
PleI	GAGTC	1 cut(s)	198
PpsI	GAGTC	1 cut(s)	198
RsaI	GTAC	1 cut(s)	197
RsaNI	GTAC	1 cut(s)	196
SapI	GCTCTTC	1 cut(s)	33
SaqAI	TTAA	2 cut(s)	201, 322
Sau3AI	GATC	1 cut(s)	178
SchI	GAGTC	1 cut(s)	199
SetI	ASST	8 cut(s)	15, 23, 52, 142, 168, 233, 242, 290
Sse9I	AATT	4 cut(s)	102, 134, 154, 207
SspI	AATATT	1 cut(s)	70
SspMI	CTAG	1 cut(s)	237
StyI	CCWWGG	1 cut(s)	127
TaqI	TCGA	1 cut(s)	9
TasI	AATT	4 cut(s)	102, 134, 154, 207
Tru1I	TTAA	2 cut(s)	201, 322
Tru9I	TTAA	2 cut(s)	201, 322
XapI	RAATTY	3 cut(s)	102, 154, 207
XceI	RCATGY	1 cut(s)	259
XspI	CTAG	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.