Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0017978

Physical Location & Seq

Genomic Coordinates Reverse (-)

23172980 .. 23173670

Gene Structure 691 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00101150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGTGATTGGAGCTCTCACGGCGCACGGGACCCGCAAGGTTCAGCAAGCAAAGTTCTTGAGTGAAGCTAGCGATCGAGTTGAGCTTGCACATGTGAGCTACTTCGATGCGAATTACTTGAAAGACGCAGATGCACGAAATGAAGACGGTGAAGCGCCCGAGATATTCAGCCTTGGGGAATTACCCGAAGAAATAGGAAATTTGGCTAAGCTAAGAATGCTTGATCTTAGTTGGAGTCGGTACATTAAGAGAATTCTATCCACTTTGATATCAAGGTTGTCTAGGTCGGAAGAACTATACATGCAAGATAGTTTTCGGGACGAGAGAGCAAGGTTGAGCGAGAAGGAGAAGAAACTATTGTTAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC TIR

Protein Analysis

122

Amino Acids

14.02

Weight (kDa)

5.49

Isoelectric Point (pI)

43.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017978)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05722
rosa_multiflora	Rmu_sc0003012.1_g000003
rosa_roxburghii	Rroxscaffold_2G00076990 Rroxscaffold_2G00101150 Rroxscaffold_2G00101160 Rroxscaffold_3G00238020 Rroxscaffold_5G00341310 Rroxscaffold_5G00341320 Rroxscaffold_5G00383400 Rroxscaffold_7G00209180
rosa_wichuraiana	Rw6G007470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	34
AcsI	RAATTY	2 cut(s)	199, 252
AfaI	GTAC	1 cut(s)	242
AflIII	ACRYGT	1 cut(s)	91
AgsI	TTSAA	1 cut(s)	121
AluBI	AGCT	5 cut(s)	14, 68, 85, 99, 211
AluI	AGCT	5 cut(s)	14, 68, 85, 99, 211
Alw21I	GWGCWC	1 cut(s)	16
Ama87I	CYCGRG	1 cut(s)	158
ApoI	RAATTY	2 cut(s)	199, 252
AspLEI	GCGC	2 cut(s)	25, 157
AspS9I	GGNCC	1 cut(s)	30
AsuHPI	GGTGA	2 cut(s)	16, 161
AsuNHI	GCTAGC	1 cut(s)	68
AvaI	CYCGRG	1 cut(s)	158
AvaII	GGWCC	1 cut(s)	30
BanII	GRGCYC	1 cut(s)	16
BbsI	GAAGAC	1 cut(s)	150
Bbv12I	GWGCWC	1 cut(s)	16
BceAI	ACGGC	1 cut(s)	36
BfaI	CTAG	2 cut(s)	69, 282
BfoI	RGCGCY	1 cut(s)	158
BlpI	GCTNAGC	1 cut(s)	207
Bme18I	GGWCC	1 cut(s)	30
BmeT110I	CYCGRG	1 cut(s)	158
BmgT120I	GGNCC	1 cut(s)	30
BmiI	GGNNCC	2 cut(s)	31, 32
BmsI	GCATC	2 cut(s)	97, 121
BmtI	GCTAGC	1 cut(s)	72
BpiI	GAAGAC	1 cut(s)	150
Bpu1102I	GCTNAGC	1 cut(s)	207
BpuEI	CTTGAG	1 cut(s)	79
BsaJI	CCNNGG	1 cut(s)	172
BseDI	CCNNGG	1 cut(s)	172
Bsh1285I	CGRYCG	1 cut(s)	76
BsiEI	CGRYCG	1 cut(s)	76
BsiHKAI	GWGCWC	1 cut(s)	16
BsiHKCI	CYCGRG	1 cut(s)	158
BslFI	GGGAC	2 cut(s)	43, 332
BsmFI	GGGAC	2 cut(s)	43, 332
BsmI	GAATGC	1 cut(s)	222
BsoBI	CYCGRG	1 cut(s)	158
Bsp1286I	GDGCHC	1 cut(s)	16
Bsp143I	GATC	2 cut(s)	73, 223
Bsp1720I	GCTNAGC	1 cut(s)	207
BspACI	CCGC	1 cut(s)	34
BspLI	GGNNCC	2 cut(s)	31, 32
BspOI	GCTAGC	1 cut(s)	72
BssECI	CCNNGG	1 cut(s)	172
BssMI	GATC	2 cut(s)	73, 223
BssT1I	CCWWGG	1 cut(s)	172
Bst4CI	ACNGT	1 cut(s)	149
BstC8I	GCNNGC	3 cut(s)	48, 70, 87
BstDEI	CTNAG	3 cut(s)	207, 212, 227
BstH2I	RGCGCY	1 cut(s)	158
BstHHI	GCGC	2 cut(s)	25, 157
BstKTI	GATC	2 cut(s)	76, 226
BstMBI	GATC	2 cut(s)	73, 223
BstMCI	CGRYCG	1 cut(s)	76
BstMWI	GCNNNNNNNGC	2 cut(s)	20, 217
BstNSI	RCATGY	2 cut(s)	95, 304
BstV2I	GAAGAC	1 cut(s)	150
Cac8I	GCNNGC	3 cut(s)	48, 70, 87
CfoI	GCGC	2 cut(s)	25, 157
Cfr13I	GGNCC	1 cut(s)	30
CseI	GACGC	1 cut(s)	134
Csp6I	GTAC	1 cut(s)	241
CviAII	CATG	2 cut(s)	92, 301
CviJI	RGCY	7 cut(s)	14, 68, 85, 99, 171, 206, 211
CviKI_1	RGCY	7 cut(s)	14, 68, 85, 99, 171, 206, 211
CviQI	GTAC	1 cut(s)	241
DdeI	CTNAG	3 cut(s)	207, 212, 227
DpnI	GATC	2 cut(s)	75, 225
DpnII	GATC	2 cut(s)	73, 223
Ecl136II	GAGCTC	1 cut(s)	14
Eco130I	CCWWGG	1 cut(s)	172
Eco24I	GRGCYC	1 cut(s)	16
Eco32I	GATATC	1 cut(s)	270
Eco47I	GGWCC	1 cut(s)	30
Eco53kI	GAGCTC	1 cut(s)	14
Eco88I	CYCGRG	1 cut(s)	158
EcoICRI	GAGCTC	1 cut(s)	14
EcoO109I	RGGNCCY	1 cut(s)	30
EcoRI	GAATTC	1 cut(s)	252
EcoRV	GATATC	1 cut(s)	270
EcoT14I	CCWWGG	1 cut(s)	172
EcoT38I	GRGCYC	1 cut(s)	16
ErhI	CCWWGG	1 cut(s)	172
FaeI	CATG	2 cut(s)	95, 304
FaiI	YATR	3 cut(s)	93, 298, 302
FaqI	GGGAC	2 cut(s)	43, 332
FatI	CATG	2 cut(s)	91, 300
FauI	CCCGC	1 cut(s)	41
FriOI	GRGCYC	1 cut(s)	16
FspBI	CTAG	2 cut(s)	69, 282
GlaI	GCGC	2 cut(s)	24, 156
HaeII	RGCGCY	1 cut(s)	158
HgaI	GACGC	1 cut(s)	134
HhaI	GCGC	2 cut(s)	25, 157
Hin1II	CATG	2 cut(s)	95, 304
Hin6I	GCGC	2 cut(s)	23, 155
HinP1I	GCGC	2 cut(s)	23, 155
HinfI	GANTC	1 cut(s)	235
HphI	GGTGA	2 cut(s)	16, 161
Hpy188I	TCNGA	1 cut(s)	289
Hpy188III	TCNNGA	2 cut(s)	58, 317
HpyAV	CCTTC	1 cut(s)	337
HpyCH4III	ACNGT	1 cut(s)	149
HpyCH4V	TGCA	3 cut(s)	89, 134, 304
HpyF10VI	GCNNNNNNNGC	2 cut(s)	20, 217
HpyF3I	CTNAG	3 cut(s)	207, 212, 227
Hsp92II	CATG	2 cut(s)	95, 304
HspAI	GCGC	2 cut(s)	23, 155
KflI	GGGWCCC	1 cut(s)	30
Kzo9I	GATC	2 cut(s)	73, 223
LmnI	GCTCC	1 cut(s)	11
LweI	GCATC	2 cut(s)	97, 121
MaeI	CTAG	2 cut(s)	69, 282
MalI	GATC	2 cut(s)	75, 225
MboI	GATC	2 cut(s)	73, 223
MboII	GAAGA	4 cut(s)	155, 200, 302, 361
MhlI	GDGCHC	1 cut(s)	16
MluCI	AATT	4 cut(s)	112, 179, 199, 252
MlyI	GAGTC	1 cut(s)	244
MmeI	TCCRAC	2 cut(s)	212, 267
MseI	TTAA	2 cut(s)	246, 367
Mva1269I	GAATGC	1 cut(s)	222
MwoI	GCNNNNNNNGC	2 cut(s)	20, 217
NdeII	GATC	2 cut(s)	73, 223
NheI	GCTAGC	1 cut(s)	68
NlaIII	CATG	2 cut(s)	95, 304
NlaIV	GGNNCC	2 cut(s)	31, 32
NspI	RCATGY	2 cut(s)	95, 304
PciI	ACATGT	1 cut(s)	91
PctI	GAATGC	1 cut(s)	222
Ple19I	CGATCG	1 cut(s)	76
PleI	GAGTC	1 cut(s)	243
PpsI	GAGTC	1 cut(s)	243
PpuMI	RGGWCCY	1 cut(s)	30
PscI	ACATGT	1 cut(s)	91
Psp124BI	GAGCTC	1 cut(s)	16
Psp5II	RGGWCCY	1 cut(s)	30
PspN4I	GGNNCC	2 cut(s)	31, 32
PspPI	GGNCC	1 cut(s)	30
PspPPI	RGGWCCY	1 cut(s)	30
PvuI	CGATCG	1 cut(s)	76
RsaI	GTAC	1 cut(s)	242
RsaNI	GTAC	1 cut(s)	241
SacI	GAGCTC	1 cut(s)	16
SaqAI	TTAA	2 cut(s)	246, 367
Sau3AI	GATC	2 cut(s)	73, 223
Sau96I	GGNCC	1 cut(s)	30
SchI	GAGTC	1 cut(s)	244
SduI	GDGCHC	1 cut(s)	16
SetI	ASST	9 cut(s)	16, 42, 70, 87, 101, 213, 278, 287, 335
SfaNI	GCATC	2 cut(s)	97, 121
SinI	GGWCC	1 cut(s)	30
SmlI	CTYRAG	1 cut(s)	58
SmoI	CTYRAG	1 cut(s)	58
Sse9I	AATT	4 cut(s)	112, 179, 199, 252
SsiI	CCGC	1 cut(s)	34
SspMI	CTAG	2 cut(s)	69, 282
SstI	GAGCTC	1 cut(s)	16
StyI	CCWWGG	1 cut(s)	172
TaaI	ACNGT	1 cut(s)	149
TaqI	TCGA	2 cut(s)	76, 105
TasI	AATT	4 cut(s)	112, 179, 199, 252
Tru1I	TTAA	2 cut(s)	246, 367
Tru9I	TTAA	2 cut(s)	246, 367
TspDTI	ATGAA	1 cut(s)	156
VpaK11BI	GGWCC	1 cut(s)	30
XapI	RAATTY	2 cut(s)	199, 252
XceI	RCATGY	2 cut(s)	95, 304
XspI	CTAG	2 cut(s)	69, 282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.